Wall clock time and date at job start Tue Mar 9 2021 13:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.47277 * 2 1 4 4 C 1.50705 * 109.47312 * 240.00104 * 2 1 3 5 5 C 1.37975 * 120.32708 * 119.99683 * 4 2 1 6 6 N 1.32013 * 120.90234 * 179.97438 * 5 4 2 7 7 C 1.32341 * 121.64441 * 0.02562 * 6 5 4 8 8 N 1.39142 * 119.71656 * 179.97438 * 7 6 5 9 9 C 1.46501 * 120.00261 * 0.02562 * 8 7 6 10 10 H 1.09002 * 112.84580 * 336.19685 * 9 8 7 11 11 C 1.53782 * 113.61292 * 107.49667 * 9 8 7 12 12 C 1.53787 * 87.07567 * 89.11883 * 11 9 8 13 13 H 1.08994 * 113.69274 * 270.87348 * 12 11 9 14 14 C 1.50700 * 113.61295 * 139.97915 * 12 11 9 15 15 C 1.38214 * 120.00249 * 322.50359 * 14 12 11 16 16 C 1.38256 * 120.00160 * 179.97438 * 15 14 12 17 17 C 1.38211 * 120.00062 * 0.26318 * 16 15 14 18 18 C 1.38258 * 119.99784 * 359.47854 * 17 16 15 19 19 C 1.50707 * 120.00006 * 180.25721 * 18 17 16 20 20 F 1.39894 * 109.47189 * 270.23588 * 19 18 17 21 21 F 1.39897 * 109.46885 * 30.24166 * 19 18 17 22 22 F 1.39902 * 109.46819 * 150.23817 * 19 18 17 23 23 C 1.38211 * 120.00113 * 0.49766 * 18 17 16 24 24 C 1.53771 * 113.61772 * 205.00027 * 9 8 7 25 25 C 1.39345 * 120.56374 * 0.25414 * 7 6 5 26 26 F 1.35094 * 120.46943 * 179.71873 * 25 7 6 27 27 C 1.38449 * 119.05330 * 359.49608 * 25 7 6 28 28 H 0.96698 * 113.99939 * 60.00478 * 1 2 3 29 29 H 1.08999 * 109.47360 * 120.00329 * 2 1 3 30 30 H 1.48505 * 109.99697 * 298.68265 * 3 2 1 31 31 H 1.48504 * 109.99859 * 59.99759 * 3 2 1 32 32 H 1.07997 * 119.55343 * 0.02562 * 5 4 2 33 33 H 0.96998 * 119.99686 * 180.02562 * 8 7 6 34 34 H 1.08998 * 113.61874 * 334.57858 * 11 9 8 35 35 H 1.08991 * 113.61614 * 203.66661 * 11 9 8 36 36 H 1.07999 * 119.99762 * 359.97438 * 15 14 12 37 37 H 1.08002 * 119.99676 * 179.97438 * 16 15 14 38 38 H 1.07998 * 120.00348 * 179.72205 * 17 16 15 39 39 H 1.08001 * 120.00363 * 179.76462 * 23 18 17 40 40 H 1.08999 * 113.61750 * 156.33808 * 24 9 8 41 41 H 1.09005 * 113.69283 * 25.44261 * 24 9 8 42 42 H 1.08001 * 120.75664 * 180.24081 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7250 -0.0463 -2.1431 6 7 3.1717 -0.6577 -3.2245 7 6 2.8792 -1.9233 -3.4774 8 7 3.3713 -2.5280 -4.6300 9 6 4.2097 -1.7640 -5.5572 10 1 4.0494 -0.6883 -5.4845 11 6 5.6923 -2.1713 -5.5253 12 6 5.3490 -3.2092 -6.6070 13 1 5.0366 -4.1732 -6.2056 14 6 6.4011 -3.3347 -7.6787 15 6 7.0697 -2.2107 -8.1258 16 6 8.0352 -2.3259 -9.1086 17 6 8.3281 -3.5643 -9.6479 18 6 7.6631 -4.6894 -9.1969 19 6 7.9865 -6.0406 -9.7808 20 9 7.1647 -6.2792 -10.8874 21 9 9.3268 -6.0670 -10.1808 22 9 7.7683 -7.0298 -8.8159 23 6 6.6982 -4.5743 -8.2140 24 6 4.1757 -2.2959 -6.9996 25 6 2.0779 -2.6539 -2.6023 26 9 1.7759 -3.9441 -2.8652 27 6 1.5996 -2.0400 -1.4572 28 1 -0.3933 0.4416 -0.7651 29 1 1.7924 -0.5139 0.8899 30 1 1.5879 2.4585 -1.2243 31 1 1.5615 2.4679 1.2085 32 1 2.9850 0.9875 -1.9701 33 1 3.1591 -3.4553 -4.8195 34 1 6.0034 -2.6137 -4.5790 35 1 6.3677 -1.3884 -5.8701 36 1 6.8378 -1.2424 -7.7074 37 1 8.5573 -1.4474 -9.4583 38 1 9.0791 -3.6537 -10.4188 39 1 6.1760 -5.4527 -7.8644 40 1 4.4366 -1.5470 -7.7474 41 1 3.2629 -2.8389 -7.2448 42 1 0.9796 -2.5815 -0.7581 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9705320_17656566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:51:04 Heat of formation + Delta-G solvation = -118.973279 kcal Electronic energy + Delta-G solvation = -32014.230169 eV Core-core repulsion = 26847.640627 eV Total energy + Delta-G solvation = -5166.589542 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.109 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -51.25487 -49.96277 -48.77842 -48.73102 -41.65754 -41.07287 -39.42858 -38.01260 -35.55402 -33.26758 -32.90090 -32.35790 -30.92119 -27.18391 -26.87050 -26.61318 -26.04449 -24.75115 -23.43883 -23.00702 -22.44295 -20.41467 -19.59260 -19.54398 -19.39853 -19.05583 -18.45180 -18.18485 -17.56162 -17.34420 -17.02679 -16.66196 -16.29973 -16.08733 -16.03364 -15.77809 -15.61051 -15.50509 -15.47153 -15.19392 -15.07664 -14.94930 -14.89273 -14.67232 -14.47759 -14.30640 -14.22579 -14.02206 -13.75538 -13.52277 -13.36824 -13.28691 -12.84373 -12.65519 -12.40214 -12.07289 -11.97608 -11.83385 -11.26935 -11.11448 -10.77468 -10.62488 -10.52441 -10.20662 -9.80542 -8.76683 -4.87715 -0.09061 -0.08049 0.10237 0.22689 1.33047 1.59368 1.64607 1.94726 2.01624 2.42915 2.53743 2.65979 2.93837 3.02180 3.26281 3.33129 3.43412 3.49598 3.60544 3.66217 3.73769 3.83652 3.86278 3.96317 3.99929 4.08246 4.11801 4.24034 4.39271 4.44998 4.54582 4.65082 4.70239 4.74988 4.80593 4.86931 4.90256 4.98228 5.00936 5.07426 5.15128 5.18789 5.32318 5.43793 5.53186 5.78461 6.02063 6.18636 6.51047 6.95241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.069 4.069 3 Si 0.767 3.233 4 C -0.203 4.203 5 C 0.149 3.851 6 N -0.522 5.522 7 C 0.385 3.615 8 N -0.698 5.698 9 C 0.133 3.867 10 H 0.107 0.893 11 C -0.137 4.137 12 C -0.073 4.073 13 H 0.098 0.902 14 C -0.073 4.073 15 C -0.083 4.083 16 C -0.116 4.116 17 C -0.087 4.087 18 C -0.195 4.195 19 C 0.505 3.495 20 F -0.184 7.184 21 F -0.181 7.181 22 F -0.183 7.183 23 C -0.081 4.081 24 C -0.130 4.130 25 C -0.039 4.039 26 F -0.142 7.142 27 C -0.041 4.041 28 H 0.387 0.613 29 H 0.128 0.872 30 H -0.275 1.275 31 H -0.303 1.303 32 H 0.185 0.815 33 H 0.415 0.585 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.141 0.859 39 H 0.135 0.865 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.845 5.495 0.499 5.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.178 4.178 3 Si 0.672 3.328 4 C -0.209 4.209 5 C -0.008 4.008 6 N -0.239 5.239 7 C 0.147 3.853 8 N -0.330 5.330 9 C 0.027 3.973 10 H 0.125 0.875 11 C -0.176 4.176 12 C -0.091 4.091 13 H 0.116 0.884 14 C -0.073 4.073 15 C -0.100 4.100 16 C -0.133 4.133 17 C -0.105 4.105 18 C -0.196 4.196 19 C 0.452 3.548 20 F -0.165 7.165 21 F -0.163 7.163 22 F -0.164 7.164 23 C -0.099 4.099 24 C -0.168 4.168 25 C -0.065 4.065 26 F -0.121 7.121 27 C -0.067 4.067 28 H 0.236 0.764 29 H 0.146 0.854 30 H -0.201 1.201 31 H -0.231 1.231 32 H 0.201 0.799 33 H 0.253 0.747 34 H 0.083 0.917 35 H 0.128 0.872 36 H 0.175 0.825 37 H 0.177 0.823 38 H 0.159 0.841 39 H 0.153 0.847 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.354 6.462 0.280 6.883 hybrid contribution -1.735 -2.129 -0.210 2.754 sum 0.619 4.334 0.070 4.378 Atomic orbital electron populations 1.86585 1.18575 1.80364 1.50225 1.25062 0.83311 1.11743 0.97720 0.94182 0.90103 0.71609 0.76942 1.20911 1.04600 0.94692 1.00667 1.22714 0.90972 0.99976 0.87177 1.67357 1.26908 1.07290 1.22321 1.18528 0.90000 0.89256 0.87503 1.44319 1.53941 1.14585 1.20172 1.21844 0.89991 0.97024 0.88422 0.87529 1.23594 0.96986 0.98701 0.98336 1.21618 0.94027 0.99488 0.94002 0.88385 1.19819 0.97680 0.92269 0.97498 1.21598 0.93873 0.99498 0.95051 1.21494 0.97935 0.97461 0.96439 1.21198 0.98247 0.91880 0.99149 1.19995 1.04433 0.91668 1.03494 1.18537 0.74112 0.86403 0.75795 1.93216 1.72701 1.95408 1.55204 1.93183 1.35008 1.96904 1.91173 1.93182 1.94487 1.65218 1.63550 1.20981 0.95366 0.99175 0.94427 1.23451 0.97967 0.99277 0.96075 1.18158 1.07837 0.80954 0.99596 1.91465 1.92268 1.34332 1.94041 1.21429 0.96103 0.94798 0.94410 0.76407 0.85412 1.20144 1.23066 0.79884 0.74741 0.91728 0.87223 0.82456 0.82300 0.84102 0.84738 0.87101 0.90597 0.82975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.02 12.78 -148.98 -1.90 -1.88 16 2 C -0.07 0.25 2.84 71.24 0.20 0.45 16 3 Si 0.77 -4.05 29.82 68.60 2.05 -2.00 16 4 C -0.20 0.44 5.40 -19.77 -0.11 0.33 16 5 C 0.15 -0.35 9.84 84.60 0.83 0.48 16 6 N -0.52 -0.48 9.13 -193.04 -1.76 -2.24 16 7 C 0.39 0.60 7.49 133.08 1.00 1.59 16 8 N -0.70 1.32 5.41 -321.79 -1.74 -0.43 16 9 C 0.13 -0.64 4.35 45.51 0.20 -0.44 16 10 H 0.11 -0.37 7.41 -2.39 -0.02 -0.39 16 11 C -0.14 0.82 7.25 31.12 0.23 1.05 16 12 C -0.07 0.42 3.86 -11.01 -0.04 0.38 16 13 H 0.10 -0.53 8.09 -2.39 -0.02 -0.55 16 14 C -0.07 0.25 5.29 -19.86 -0.11 0.14 16 15 C -0.08 0.48 8.61 22.27 0.19 0.67 16 16 C -0.12 0.56 10.05 22.27 0.22 0.78 16 17 C -0.09 0.09 9.40 22.27 0.21 0.30 16 18 C -0.19 -0.37 5.45 -19.86 -0.11 -0.48 16 19 C 0.51 2.36 3.36 71.24 0.24 2.60 16 20 F -0.18 -1.19 17.30 44.97 0.78 -0.41 16 21 F -0.18 -1.02 16.47 44.97 0.74 -0.28 16 22 F -0.18 -1.10 16.46 44.97 0.74 -0.35 16 23 C -0.08 0.00 9.06 22.27 0.20 0.20 16 24 C -0.13 0.90 7.29 31.12 0.23 1.12 16 25 C -0.04 -0.10 7.35 22.59 0.17 0.06 16 26 F -0.14 -0.62 16.65 44.97 0.75 0.13 16 27 C -0.04 -0.02 9.75 22.48 0.22 0.20 16 28 H 0.39 -2.13 8.70 -74.06 -0.64 -2.78 16 29 H 0.13 -0.67 7.96 -2.39 -0.02 -0.69 16 30 H -0.28 0.56 7.11 99.48 0.71 1.26 16 31 H -0.30 -0.94 7.11 99.48 0.71 -0.23 16 32 H 0.18 -1.38 4.88 -2.91 -0.01 -1.40 16 33 H 0.41 -1.33 8.17 -92.71 -0.76 -2.09 16 34 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.11 -0.94 6.31 -2.39 -0.02 -0.96 16 36 H 0.16 -1.70 6.66 -2.91 -0.02 -1.72 16 37 H 0.16 -1.55 8.06 -2.91 -0.02 -1.57 16 38 H 0.14 -0.41 7.61 -2.91 -0.02 -0.43 16 39 H 0.13 -0.14 7.60 -2.91 -0.02 -0.16 16 40 H 0.11 -0.97 7.72 -2.39 -0.02 -0.99 16 41 H 0.08 -0.46 8.14 -2.38 -0.02 -0.48 16 42 H 0.15 -0.11 8.06 -2.91 -0.02 -0.13 16 Total: 0.00 -14.71 368.38 3.17 -11.53 By element: Atomic # 1 Polarization: -13.27 SS G_CDS: -0.24 Total: -13.51 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 3.77 Total: 9.44 kcal Atomic # 7 Polarization: 0.83 SS G_CDS: -3.50 Total: -2.67 kcal Atomic # 8 Polarization: 0.02 SS G_CDS: -1.90 Total: -1.88 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 3.01 Total: -0.92 kcal Atomic # 14 Polarization: -4.05 SS G_CDS: 2.05 Total: -2.00 kcal Total: -14.71 3.17 -11.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705320_17656566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.440 kcal (2) G-P(sol) polarization free energy of solvation -14.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds