Wall clock time and date at job start Tue Mar 9 2021 13:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47344 * 2 1 4 4 C 1.50699 * 109.47245 * 120.00172 * 2 1 3 5 5 C 1.37976 * 120.32817 * 244.99252 * 4 2 1 6 6 N 1.32015 * 120.90018 * 180.02562 * 5 4 2 7 7 C 1.32328 * 121.64787 * 359.97438 * 6 5 4 8 8 N 1.39140 * 119.72029 * 180.02562 * 7 6 5 9 9 C 1.46507 * 120.00035 * 359.97438 * 8 7 6 10 10 H 1.09001 * 112.84171 * 336.19181 * 9 8 7 11 11 C 1.53772 * 113.61667 * 107.49740 * 9 8 7 12 12 C 1.53788 * 87.08051 * 89.11772 * 11 9 8 13 13 H 1.08993 * 113.68862 * 270.87423 * 12 11 9 14 14 C 1.50701 * 113.61471 * 139.97830 * 12 11 9 15 15 C 1.38213 * 119.97298 * 322.23080 * 14 12 11 16 16 C 1.38471 * 120.02078 * 179.76868 * 15 14 12 17 17 F 1.35100 * 120.01195 * 180.22950 * 16 15 14 18 18 C 1.38421 * 119.97789 * 0.50302 * 16 15 14 19 19 C 1.38420 * 119.94831 * 359.75027 * 18 16 15 20 20 F 1.35097 * 120.01359 * 179.97438 * 19 18 16 21 21 C 1.38201 * 119.97285 * 142.50157 * 14 12 11 22 22 C 1.53778 * 113.61195 * 204.99965 * 9 8 7 23 23 C 1.39345 * 120.56381 * 359.97438 * 7 6 5 24 24 F 1.35102 * 120.47065 * 179.72424 * 23 7 6 25 25 C 1.38444 * 119.05708 * 0.02562 * 23 7 6 26 26 H 0.96704 * 113.99545 * 300.00181 * 1 2 3 27 27 H 1.09001 * 109.46686 * 239.99903 * 2 1 3 28 28 H 1.48505 * 109.99889 * 178.68119 * 3 2 1 29 29 H 1.48493 * 110.00273 * 300.00195 * 3 2 1 30 30 H 1.07999 * 119.54945 * 0.02739 * 5 4 2 31 31 H 0.97000 * 120.00675 * 179.97438 * 8 7 6 32 32 H 1.09000 * 113.61271 * 203.66300 * 11 9 8 33 33 H 1.08995 * 113.61785 * 334.56946 * 11 9 8 34 34 H 1.07993 * 119.98737 * 359.97438 * 15 14 12 35 35 H 1.07995 * 120.03180 * 179.72096 * 18 16 15 36 36 H 1.07999 * 119.99289 * 0.02562 * 21 14 12 37 37 H 1.08998 * 113.61967 * 25.43179 * 22 9 8 38 38 H 1.09008 * 113.60932 * 156.24958 * 22 9 8 39 39 H 1.07995 * 120.75768 * 179.97438 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6382 -0.0203 2.1936 6 7 3.0839 -0.6314 3.2755 7 6 2.8730 -1.9216 3.4809 8 7 3.3605 -2.5250 4.6360 9 6 4.1045 -1.7325 5.6184 10 1 4.5633 -0.8438 5.1850 11 6 3.3166 -1.4543 6.9093 12 6 3.8960 -2.7709 7.4533 13 1 3.2864 -3.6450 7.2250 14 6 4.2972 -2.6999 8.9042 15 6 4.8750 -1.5486 9.4054 16 6 5.2396 -1.4806 10.7395 17 9 5.8001 -0.3535 11.2302 18 6 5.0348 -2.5697 11.5689 19 6 4.4609 -3.7240 11.0646 20 9 4.2609 -4.7880 11.8728 21 6 4.0922 -3.7879 9.7313 22 6 5.0683 -2.5660 6.4793 23 6 2.1657 -2.6807 2.5508 24 9 1.9562 -3.9990 2.7597 25 6 1.6863 -2.0663 1.4065 26 1 -0.3933 0.4418 0.7651 27 1 1.7922 -0.5139 -0.8900 28 1 3.5346 1.7702 0.0321 29 1 1.5615 2.4679 -1.2084 30 1 2.8295 1.0343 2.0606 31 1 3.2080 -3.4703 4.7909 32 1 3.6592 -0.5709 7.4480 33 1 2.2353 -1.4760 6.7741 34 1 5.0391 -0.7007 8.7570 35 1 5.3230 -2.5192 12.6084 36 1 3.6451 -4.6887 9.3376 37 1 5.4011 -3.4851 5.9971 38 1 5.8905 -1.9866 6.8994 39 1 1.1351 -2.6286 0.6673 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_9705376_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:51:28 Heat of formation + Delta-G solvation = -65.761133 kcal Electronic energy + Delta-G solvation = -27608.975636 eV Core-core repulsion = 23069.685141 eV Total energy + Delta-G solvation = -4539.290496 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.103 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.03206 -50.01203 -49.91802 -41.74269 -41.07908 -39.17066 -37.94763 -35.54601 -33.27279 -32.36751 -31.46621 -30.91098 -27.09239 -26.91181 -26.24863 -24.95169 -23.96151 -23.09689 -22.87217 -20.54891 -19.61874 -18.96382 -18.44270 -18.26771 -18.10392 -17.58045 -17.51210 -17.02840 -16.99177 -16.81460 -16.36278 -16.31663 -16.28928 -16.08160 -15.73985 -15.40715 -15.35105 -15.02876 -14.80449 -14.35984 -14.17563 -14.02354 -13.79745 -13.68787 -13.56734 -13.13889 -13.03941 -12.86478 -12.65707 -12.21941 -12.13633 -11.99615 -11.47821 -11.26383 -10.72574 -10.71445 -10.50082 -9.98319 -9.85142 -8.84434 -5.12027 -0.16051 -0.13391 -0.11881 0.06748 1.19157 1.55660 1.82879 1.91101 2.19035 2.49418 2.74179 2.98974 3.11218 3.22439 3.27692 3.36997 3.45676 3.49196 3.54659 3.66970 3.74023 3.78507 3.82240 3.89831 3.95191 3.99760 4.35660 4.39676 4.45303 4.53169 4.59460 4.63143 4.65183 4.72121 4.74828 4.84540 4.89391 4.91155 4.93175 4.96282 5.24319 5.36870 5.65905 5.89262 6.09487 6.49114 6.88504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.055 4.055 3 Si 0.684 3.316 4 C -0.208 4.208 5 C 0.149 3.851 6 N -0.510 5.510 7 C 0.393 3.607 8 N -0.700 5.700 9 C 0.134 3.866 10 H 0.112 0.888 11 C -0.144 4.144 12 C -0.078 4.078 13 H 0.104 0.896 14 C -0.012 4.012 15 C -0.163 4.163 16 C 0.136 3.864 17 F -0.129 7.129 18 C -0.198 4.198 19 C 0.135 3.865 20 F -0.129 7.129 21 C -0.162 4.162 22 C -0.138 4.138 23 C -0.019 4.019 24 F -0.133 7.133 25 C -0.037 4.037 26 H 0.380 0.620 27 H 0.115 0.885 28 H -0.253 1.253 29 H -0.251 1.251 30 H 0.164 0.836 31 H 0.413 0.587 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.403 1.794 -0.251 1.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.167 4.167 3 Si 0.586 3.414 4 C -0.214 4.214 5 C -0.008 4.008 6 N -0.226 5.226 7 C 0.155 3.845 8 N -0.333 5.333 9 C 0.028 3.972 10 H 0.130 0.870 11 C -0.183 4.183 12 C -0.096 4.096 13 H 0.122 0.878 14 C -0.012 4.012 15 C -0.182 4.182 16 C 0.117 3.883 17 F -0.107 7.107 18 C -0.217 4.217 19 C 0.116 3.884 20 F -0.108 7.108 21 C -0.181 4.181 22 C -0.176 4.176 23 C -0.046 4.046 24 F -0.112 7.112 25 C -0.064 4.064 26 H 0.227 0.773 27 H 0.133 0.867 28 H -0.178 1.178 29 H -0.176 1.176 30 H 0.180 0.820 31 H 0.250 0.750 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.160 0.840 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.751 2.614 -0.423 2.752 hybrid contribution -0.418 -1.862 -0.233 1.922 sum 0.333 0.752 -0.656 1.052 Atomic orbital electron populations 1.86519 1.17041 1.81667 1.49305 1.24865 0.85258 1.09937 0.96620 0.94892 0.81166 0.77539 0.87843 1.20945 1.05623 0.94639 1.00149 1.22324 0.91690 0.99243 0.87556 1.67274 1.24817 1.07244 1.23301 1.18371 0.90423 0.88997 0.86759 1.44221 1.58978 1.11751 1.18314 1.21804 0.92264 0.95416 0.87711 0.86986 1.23627 1.01409 0.96841 0.96430 1.21697 0.98544 1.00129 0.89224 0.87796 1.19321 0.94824 0.91757 0.95305 1.21057 1.02984 1.00193 0.93950 1.17247 0.96358 0.82717 0.92007 1.91564 1.82315 1.48705 1.88146 1.21090 1.05742 0.92644 1.02269 1.17285 0.98741 0.83942 0.88440 1.91561 1.92646 1.53948 1.72622 1.21130 1.04317 1.00748 0.91862 1.23485 0.96718 1.01415 0.95982 1.17997 1.08583 0.79511 0.98460 1.91497 1.93733 1.31052 1.94946 1.21296 0.95524 0.94465 0.95083 0.77282 0.86721 1.17819 1.17594 0.81968 0.74988 0.88394 0.90371 0.83731 0.83327 0.83977 0.90206 0.87998 0.83293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.52 12.84 -35.23 -0.45 0.06 16 2 C -0.06 0.09 2.82 36.01 0.10 0.19 16 3 Si 0.68 -1.64 29.83 -169.99 -5.07 -6.72 16 4 C -0.21 0.20 5.36 -104.47 -0.56 -0.36 16 5 C 0.15 -0.15 9.84 -17.57 -0.17 -0.32 16 6 N -0.51 -0.26 9.13 -12.37 -0.11 -0.37 16 7 C 0.39 0.19 7.49 -154.87 -1.16 -0.97 16 8 N -0.70 0.94 5.42 -53.06 -0.29 0.65 16 9 C 0.13 -0.31 4.35 -67.12 -0.29 -0.61 16 10 H 0.11 -0.16 7.41 -51.93 -0.38 -0.55 16 11 C -0.14 0.40 7.25 -25.92 -0.19 0.22 16 12 C -0.08 0.24 3.86 -90.96 -0.35 -0.11 16 13 H 0.10 -0.38 8.09 -51.93 -0.42 -0.80 16 14 C -0.01 0.02 5.29 -104.64 -0.55 -0.53 16 15 C -0.16 0.19 8.58 -39.50 -0.34 -0.15 16 16 C 0.14 0.06 7.30 -39.43 -0.29 -0.23 16 17 F -0.13 -0.20 17.27 2.25 0.04 -0.16 16 18 C -0.20 -0.09 10.01 -39.45 -0.39 -0.48 16 19 C 0.14 0.09 7.30 -39.42 -0.29 -0.20 16 20 F -0.13 -0.25 17.27 2.25 0.04 -0.21 16 21 C -0.16 0.13 9.69 -39.50 -0.38 -0.25 16 22 C -0.14 0.46 7.29 -25.92 -0.19 0.27 16 23 C -0.02 -0.02 7.35 -39.09 -0.29 -0.30 16 24 F -0.13 -0.19 16.65 2.25 0.04 -0.16 16 25 C -0.04 0.00 9.82 -39.26 -0.39 -0.39 16 26 H 0.38 -1.81 8.70 45.56 0.40 -1.41 16 27 H 0.12 -0.14 7.96 -51.93 -0.41 -0.55 16 28 H -0.25 0.03 7.11 56.52 0.40 0.43 16 29 H -0.25 -0.27 7.11 56.52 0.40 0.14 16 30 H 0.16 -0.55 4.90 -52.49 -0.26 -0.81 16 31 H 0.41 -0.95 8.17 -40.82 -0.33 -1.29 16 32 H 0.10 -0.32 6.32 -51.93 -0.33 -0.65 16 33 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 34 H 0.14 -0.41 6.67 -52.49 -0.35 -0.76 16 35 H 0.15 -0.09 8.06 -52.49 -0.42 -0.51 16 36 H 0.14 -0.32 8.05 -52.49 -0.42 -0.74 16 37 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 38 H 0.10 -0.37 7.72 -51.92 -0.40 -0.77 16 39 H 0.15 -0.11 8.06 -52.49 -0.42 -0.53 16 LS Contribution 342.59 15.07 5.16 5.16 Total: 0.00 -5.85 342.59 -10.18 -16.02 By element: Atomic # 1 Polarization: -6.24 SS G_CDS: -3.80 Total: -10.05 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -5.73 Total: -4.24 kcal Atomic # 7 Polarization: 0.68 SS G_CDS: -0.40 Total: 0.28 kcal Atomic # 8 Polarization: 0.52 SS G_CDS: -0.45 Total: 0.06 kcal Atomic # 9 Polarization: -0.65 SS G_CDS: 0.12 Total: -0.53 kcal Atomic # 14 Polarization: -1.64 SS G_CDS: -5.07 Total: -6.72 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -5.85 -10.18 -16.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705376_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.737 kcal (2) G-P(sol) polarization free energy of solvation -5.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds