Wall clock time and date at job start Tue Mar 9 2021 13:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47344 * 2 1 4 4 C 1.50699 * 109.47245 * 120.00172 * 2 1 3 5 5 C 1.37976 * 120.32817 * 244.99252 * 4 2 1 6 6 N 1.32015 * 120.90018 * 180.02562 * 5 4 2 7 7 C 1.32328 * 121.64787 * 359.97438 * 6 5 4 8 8 N 1.39140 * 119.72029 * 180.02562 * 7 6 5 9 9 C 1.46507 * 120.00035 * 359.97438 * 8 7 6 10 10 H 1.09001 * 112.84171 * 336.19181 * 9 8 7 11 11 C 1.53772 * 113.61667 * 107.49740 * 9 8 7 12 12 C 1.53788 * 87.08051 * 89.11772 * 11 9 8 13 13 H 1.08993 * 113.68862 * 270.87423 * 12 11 9 14 14 C 1.50701 * 113.61471 * 139.97830 * 12 11 9 15 15 C 1.38213 * 119.97298 * 322.23080 * 14 12 11 16 16 C 1.38471 * 120.02078 * 179.76868 * 15 14 12 17 17 F 1.35100 * 120.01195 * 180.22950 * 16 15 14 18 18 C 1.38421 * 119.97789 * 0.50302 * 16 15 14 19 19 C 1.38420 * 119.94831 * 359.75027 * 18 16 15 20 20 F 1.35097 * 120.01359 * 179.97438 * 19 18 16 21 21 C 1.38201 * 119.97285 * 142.50157 * 14 12 11 22 22 C 1.53778 * 113.61195 * 204.99965 * 9 8 7 23 23 C 1.39345 * 120.56381 * 359.97438 * 7 6 5 24 24 F 1.35102 * 120.47065 * 179.72424 * 23 7 6 25 25 C 1.38444 * 119.05708 * 0.02562 * 23 7 6 26 26 H 0.96704 * 113.99545 * 300.00181 * 1 2 3 27 27 H 1.09001 * 109.46686 * 239.99903 * 2 1 3 28 28 H 1.48505 * 109.99889 * 178.68119 * 3 2 1 29 29 H 1.48493 * 110.00273 * 300.00195 * 3 2 1 30 30 H 1.07999 * 119.54945 * 0.02739 * 5 4 2 31 31 H 0.97000 * 120.00675 * 179.97438 * 8 7 6 32 32 H 1.09000 * 113.61271 * 203.66300 * 11 9 8 33 33 H 1.08995 * 113.61785 * 334.56946 * 11 9 8 34 34 H 1.07993 * 119.98737 * 359.97438 * 15 14 12 35 35 H 1.07995 * 120.03180 * 179.72096 * 18 16 15 36 36 H 1.07999 * 119.99289 * 0.02562 * 21 14 12 37 37 H 1.08998 * 113.61967 * 25.43179 * 22 9 8 38 38 H 1.09008 * 113.60932 * 156.24958 * 22 9 8 39 39 H 1.07995 * 120.75768 * 179.97438 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6382 -0.0203 2.1936 6 7 3.0839 -0.6314 3.2755 7 6 2.8730 -1.9216 3.4809 8 7 3.3605 -2.5250 4.6360 9 6 4.1045 -1.7325 5.6184 10 1 4.5633 -0.8438 5.1850 11 6 3.3166 -1.4543 6.9093 12 6 3.8960 -2.7709 7.4533 13 1 3.2864 -3.6450 7.2250 14 6 4.2972 -2.6999 8.9042 15 6 4.8750 -1.5486 9.4054 16 6 5.2396 -1.4806 10.7395 17 9 5.8001 -0.3535 11.2302 18 6 5.0348 -2.5697 11.5689 19 6 4.4609 -3.7240 11.0646 20 9 4.2609 -4.7880 11.8728 21 6 4.0922 -3.7879 9.7313 22 6 5.0683 -2.5660 6.4793 23 6 2.1657 -2.6807 2.5508 24 9 1.9562 -3.9990 2.7597 25 6 1.6863 -2.0663 1.4065 26 1 -0.3933 0.4418 0.7651 27 1 1.7922 -0.5139 -0.8900 28 1 3.5346 1.7702 0.0321 29 1 1.5615 2.4679 -1.2084 30 1 2.8295 1.0343 2.0606 31 1 3.2080 -3.4703 4.7909 32 1 3.6592 -0.5709 7.4480 33 1 2.2353 -1.4760 6.7741 34 1 5.0391 -0.7007 8.7570 35 1 5.3230 -2.5192 12.6084 36 1 3.6451 -4.6887 9.3376 37 1 5.4011 -3.4851 5.9971 38 1 5.8905 -1.9866 6.8994 39 1 1.1351 -2.6286 0.6673 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9705376_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:51:27 Heat of formation + Delta-G solvation = -59.329456 kcal Electronic energy + Delta-G solvation = -27608.696738 eV Core-core repulsion = 23069.685141 eV Total energy + Delta-G solvation = -4539.011597 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.103 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.08900 -50.06001 -49.95018 -41.63179 -40.97480 -39.07580 -37.84027 -35.44045 -33.22171 -32.29898 -31.41240 -30.83174 -26.97700 -26.68338 -26.13281 -24.89364 -23.92602 -23.03278 -22.78502 -20.40864 -19.52750 -18.93014 -18.37475 -18.23896 -18.06153 -17.50938 -17.42879 -17.05942 -16.99790 -16.78316 -16.38163 -16.24335 -16.19208 -15.97914 -15.63351 -15.38416 -15.36896 -14.92091 -14.70202 -14.31257 -14.09216 -13.96770 -13.70902 -13.52147 -13.46232 -13.05954 -12.97295 -12.78336 -12.55174 -12.14892 -12.03319 -11.86744 -11.28467 -11.13166 -10.69615 -10.65001 -10.40016 -9.91765 -9.82449 -8.75788 -4.95806 -0.11042 -0.09737 -0.07235 0.10961 1.33471 1.68460 1.95321 2.02424 2.24732 2.54648 2.76752 3.03446 3.23458 3.30147 3.39307 3.50880 3.60833 3.68728 3.70662 3.76487 3.87281 3.91078 3.95013 4.00263 4.07244 4.13646 4.44352 4.48106 4.62303 4.71816 4.73772 4.75853 4.80134 4.81441 4.91219 4.96439 4.98070 5.00335 5.08495 5.15558 5.36361 5.48890 5.70677 6.02148 6.20364 6.80831 6.96568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.059 4.059 3 Si 0.775 3.225 4 C -0.207 4.207 5 C 0.150 3.850 6 N -0.522 5.522 7 C 0.386 3.614 8 N -0.697 5.697 9 C 0.133 3.867 10 H 0.105 0.895 11 C -0.139 4.139 12 C -0.072 4.072 13 H 0.112 0.888 14 C -0.008 4.008 15 C -0.156 4.156 16 C 0.120 3.880 17 F -0.139 7.139 18 C -0.206 4.206 19 C 0.117 3.883 20 F -0.141 7.141 21 C -0.159 4.159 22 C -0.130 4.130 23 C -0.037 4.037 24 F -0.141 7.141 25 C -0.042 4.042 26 H 0.396 0.604 27 H 0.110 0.890 28 H -0.280 1.280 29 H -0.299 1.299 30 H 0.185 0.815 31 H 0.416 0.584 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.162 0.838 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.423 2.204 -0.527 2.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.170 4.170 3 Si 0.680 3.320 4 C -0.212 4.212 5 C -0.007 4.007 6 N -0.239 5.239 7 C 0.147 3.853 8 N -0.329 5.329 9 C 0.027 3.973 10 H 0.123 0.877 11 C -0.178 4.178 12 C -0.090 4.090 13 H 0.130 0.870 14 C -0.009 4.009 15 C -0.175 4.175 16 C 0.101 3.899 17 F -0.117 7.117 18 C -0.225 4.225 19 C 0.098 3.902 20 F -0.119 7.119 21 C -0.178 4.178 22 C -0.168 4.168 23 C -0.064 4.064 24 F -0.120 7.120 25 C -0.069 4.069 26 H 0.246 0.754 27 H 0.127 0.873 28 H -0.207 1.207 29 H -0.227 1.227 30 H 0.202 0.798 31 H 0.254 0.746 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.180 0.820 35 H 0.169 0.831 36 H 0.174 0.826 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.720 3.000 -0.660 3.155 hybrid contribution -0.429 -1.966 -0.209 2.023 sum 0.291 1.034 -0.869 1.382 Atomic orbital electron populations 1.86483 1.17257 1.82147 1.50553 1.24992 0.85216 1.10640 0.96139 0.93847 0.78018 0.74721 0.85381 1.20983 1.05573 0.94280 1.00355 1.22695 0.90867 1.00183 0.86995 1.67338 1.25375 1.07274 1.23946 1.18513 0.90431 0.89127 0.87188 1.44291 1.58612 1.12021 1.17971 1.21827 0.92555 0.95338 0.87584 0.87666 1.23603 1.00818 0.97250 0.96144 1.21707 0.98753 1.00389 0.88149 0.86960 1.19464 0.94267 0.91257 0.95881 1.21272 1.01889 1.00845 0.93450 1.17408 0.97280 0.82502 0.92738 1.91536 1.82643 1.49167 1.88379 1.21183 1.05865 0.92823 1.02640 1.17463 0.99915 0.83836 0.89036 1.91527 1.92898 1.54457 1.73065 1.21354 1.03608 1.01559 0.91294 1.23457 0.96567 1.01405 0.95378 1.18133 1.09692 0.79373 0.99177 1.91469 1.93910 1.31574 1.95055 1.21438 0.95435 0.95014 0.94966 0.75400 0.87268 1.20658 1.22708 0.79820 0.74551 0.87664 0.91204 0.82007 0.83106 0.82554 0.89954 0.87358 0.83047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.29 12.84 -148.98 -1.91 -0.62 16 2 C -0.06 0.20 2.82 71.24 0.20 0.41 16 3 Si 0.77 -4.05 29.83 68.60 2.05 -2.00 16 4 C -0.21 0.45 5.36 -19.77 -0.11 0.35 16 5 C 0.15 -0.39 9.84 84.60 0.83 0.44 16 6 N -0.52 -0.31 9.13 -193.04 -1.76 -2.07 16 7 C 0.39 0.35 7.49 133.09 1.00 1.35 16 8 N -0.70 2.08 5.42 -321.80 -1.74 0.34 16 9 C 0.13 -0.72 4.35 45.51 0.20 -0.53 16 10 H 0.11 -0.38 7.41 -2.39 -0.02 -0.40 16 11 C -0.14 0.92 7.25 31.12 0.23 1.14 16 12 C -0.07 0.53 3.86 -11.01 -0.04 0.49 16 13 H 0.11 -0.97 8.09 -2.39 -0.02 -0.99 16 14 C -0.01 0.03 5.29 -19.88 -0.11 -0.07 16 15 C -0.16 0.47 8.58 22.32 0.19 0.66 16 16 C 0.12 0.13 7.30 22.37 0.16 0.29 16 17 F -0.14 -0.50 17.27 44.97 0.78 0.28 16 18 C -0.21 -0.34 10.01 22.36 0.22 -0.11 16 19 C 0.12 0.21 7.30 22.37 0.16 0.37 16 20 F -0.14 -0.66 17.27 44.97 0.78 0.11 16 21 C -0.16 0.32 9.69 22.32 0.22 0.53 16 22 C -0.13 1.02 7.29 31.12 0.23 1.25 16 23 C -0.04 -0.07 7.35 22.59 0.17 0.09 16 24 F -0.14 -0.49 16.65 44.97 0.75 0.26 16 25 C -0.04 -0.01 9.82 22.48 0.22 0.21 16 26 H 0.40 -4.09 8.70 -74.05 -0.64 -4.74 16 27 H 0.11 -0.26 7.96 -2.39 -0.02 -0.28 16 28 H -0.28 0.21 7.11 99.48 0.71 0.92 16 29 H -0.30 -0.87 7.11 99.48 0.71 -0.16 16 30 H 0.19 -1.49 4.90 -2.91 -0.01 -1.50 16 31 H 0.42 -2.03 8.17 -92.71 -0.76 -2.79 16 32 H 0.11 -0.84 6.32 -2.39 -0.02 -0.85 16 33 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 34 H 0.16 -1.13 6.67 -2.91 -0.02 -1.15 16 35 H 0.15 0.02 8.06 -2.91 -0.02 0.00 16 36 H 0.16 -0.84 8.05 -2.91 -0.02 -0.86 16 37 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H 0.11 -0.95 7.72 -2.38 -0.02 -0.96 16 39 H 0.15 -0.14 8.06 -2.91 -0.02 -0.16 16 Total: 0.00 -14.23 342.59 2.48 -11.75 By element: Atomic # 1 Polarization: -14.68 SS G_CDS: -0.22 Total: -14.90 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 3.77 Total: 6.86 kcal Atomic # 7 Polarization: 1.77 SS G_CDS: -3.50 Total: -1.73 kcal Atomic # 8 Polarization: 1.29 SS G_CDS: -1.91 Total: -0.62 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 2.30 Total: 0.64 kcal Atomic # 14 Polarization: -4.05 SS G_CDS: 2.05 Total: -2.00 kcal Total: -14.23 2.48 -11.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705376_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.578 kcal (2) G-P(sol) polarization free energy of solvation -14.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds