Wall clock time and date at job start Tue Mar 9 2021 13:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86299 * 109.46774 * 2 1 4 4 C 1.50704 * 109.47473 * 240.00058 * 2 1 3 5 5 C 1.37976 * 120.32566 * 120.01738 * 4 2 1 6 6 N 1.32013 * 120.89878 * 179.70364 * 5 4 2 7 7 C 1.32343 * 121.64449 * 0.56934 * 6 5 4 8 8 N 1.39140 * 119.71566 * 179.71028 * 7 6 5 9 9 C 1.46506 * 120.00046 * 359.72948 * 8 7 6 10 10 H 1.08992 * 112.90684 * 336.24929 * 9 8 7 11 11 C 1.54049 * 113.61276 * 107.62018 * 9 8 7 12 12 C 1.53781 * 87.08031 * 89.07129 * 11 9 8 13 13 H 1.08999 * 113.61181 * 270.87794 * 12 11 9 14 14 C 1.50698 * 113.61565 * 139.97986 * 12 11 9 15 15 C 1.38216 * 119.98241 * 142.50521 * 14 12 11 16 16 C 1.38253 * 120.03954 * 179.97438 * 15 14 12 17 17 C 1.38309 * 119.99867 * 359.97438 * 16 15 14 18 18 Cl 1.73595 * 120.02006 * 180.02562 * 17 16 15 19 19 C 1.38485 * 119.95957 * 0.02562 * 17 16 15 20 20 Cl 1.73597 * 120.01838 * 180.02562 * 19 17 16 21 21 C 1.38255 * 119.97637 * 322.21922 * 14 12 11 22 22 C 1.53781 * 87.08070 * 25.42738 * 12 11 9 23 23 C 1.39339 * 120.56416 * 359.43421 * 7 6 5 24 24 F 1.35093 * 120.47246 * 180.25291 * 23 7 6 25 25 C 1.38449 * 119.05528 * 0.27904 * 23 7 6 26 26 H 0.96693 * 114.00485 * 299.99654 * 1 2 3 27 27 H 1.08997 * 109.47074 * 119.99792 * 2 1 3 28 28 H 1.48505 * 109.99607 * 178.67936 * 3 2 1 29 29 H 1.48497 * 110.00430 * 299.99712 * 3 2 1 30 30 H 1.07998 * 119.55698 * 359.97438 * 5 4 2 31 31 H 0.97002 * 120.00066 * 179.72733 * 8 7 6 32 32 H 1.09005 * 113.62125 * 334.52173 * 11 9 8 33 33 H 1.09003 * 113.61268 * 203.61961 * 11 9 8 34 34 H 1.07997 * 119.98256 * 359.95119 * 15 14 12 35 35 H 1.07998 * 120.00064 * 180.02562 * 16 15 14 36 36 H 1.07999 * 120.00002 * 0.02562 * 21 14 12 37 37 H 1.09002 * 113.61445 * 89.11830 * 22 12 11 38 38 H 1.09002 * 113.61408 * 219.93560 * 22 12 11 39 39 H 1.07999 * 120.75389 * 180.02562 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7254 -0.0464 -2.1429 6 7 3.1765 -0.6593 -3.2215 7 6 2.8795 -1.9234 -3.4772 8 7 3.3719 -2.5282 -4.6295 9 6 4.2104 -1.7641 -5.5567 10 1 4.0513 -0.6883 -5.4845 11 6 5.6952 -2.1738 -5.5265 12 6 5.3496 -3.2110 -6.6081 13 1 5.0367 -4.1742 -6.2051 14 6 6.4004 -3.3374 -7.6809 15 6 6.6944 -4.5769 -8.2171 16 6 7.6578 -4.6941 -9.2018 17 6 8.3275 -3.5706 -9.6512 18 17 9.5368 -3.7171 -10.8881 19 6 8.0328 -2.3287 -9.1140 20 17 8.8720 -0.9174 -9.6775 21 6 7.0654 -2.2125 -8.1324 22 6 4.1768 -2.2965 -6.9991 23 6 2.0826 -2.6555 -2.5994 24 9 1.7848 -3.9473 -2.8597 25 6 1.5999 -2.0401 -1.4570 26 1 -0.3934 0.4416 0.7650 27 1 1.7923 -0.5138 0.8900 28 1 3.5345 1.7703 0.0322 29 1 1.5614 2.4679 -1.2085 30 1 2.9850 0.9876 -1.9701 31 1 3.1601 -3.4556 -4.8190 32 1 6.0069 -2.6167 -4.5806 33 1 6.3711 -1.3915 -5.8719 34 1 6.1717 -5.4544 -7.8664 35 1 7.8868 -5.6629 -9.6206 36 1 6.8321 -1.2438 -7.7160 37 1 4.4375 -1.5477 -7.7470 38 1 3.2631 -2.8384 -7.2433 39 1 0.9803 -2.5818 -0.7577 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9750036_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:52:05 Heat of formation + Delta-G solvation = 17.786392 kcal Electronic energy + Delta-G solvation = -27075.278915 eV Core-core repulsion = 22758.919678 eV Total energy + Delta-G solvation = -4316.359237 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.044 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.05149 -41.76287 -41.17394 -39.60029 -37.87858 -37.61142 -37.49665 -35.57855 -33.38543 -32.24272 -31.98874 -30.93612 -26.92742 -26.74583 -26.11925 -24.98595 -24.03306 -22.95718 -22.66988 -20.35755 -19.61537 -18.66550 -18.46035 -18.17388 -18.05900 -17.19061 -17.02207 -16.81823 -16.51926 -16.28671 -15.77492 -15.48011 -15.29357 -15.07851 -14.99451 -14.98285 -14.60210 -14.42112 -14.08328 -13.97660 -13.82333 -13.57387 -13.47564 -12.98709 -12.95831 -12.66651 -12.49075 -12.29097 -12.10501 -12.08222 -11.85795 -11.80217 -11.34593 -11.19780 -10.88690 -10.81201 -10.24458 -10.03670 -9.65747 -8.87064 -4.91604 -0.25418 -0.17067 -0.00277 0.00550 0.75657 1.15069 1.32315 1.68987 1.82887 1.99447 2.30403 2.37754 2.89950 3.06534 3.33338 3.38094 3.51515 3.58128 3.61499 3.62684 3.74164 3.86127 4.00210 4.04545 4.05961 4.20707 4.22772 4.30770 4.38943 4.55236 4.59837 4.67845 4.72744 4.76645 4.83716 4.88379 4.93439 4.96664 4.98660 5.10744 5.31145 5.41156 5.54053 5.88686 6.08406 6.82677 6.94792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.064 4.064 3 Si 0.770 3.230 4 C -0.170 4.170 5 C 0.126 3.874 6 N -0.527 5.527 7 C 0.382 3.618 8 N -0.693 5.693 9 C 0.130 3.870 10 H 0.096 0.904 11 C -0.143 4.143 12 C -0.065 4.065 13 H 0.117 0.883 14 C -0.052 4.052 15 C -0.096 4.096 16 C -0.099 4.099 17 C -0.053 4.053 18 Cl -0.061 7.061 19 C -0.043 4.043 20 Cl -0.060 7.060 21 C -0.100 4.100 22 C -0.129 4.129 23 C -0.028 4.028 24 F -0.134 7.134 25 C -0.037 4.037 26 H 0.405 0.595 27 H 0.101 0.899 28 H -0.283 1.283 29 H -0.294 1.294 30 H 0.156 0.844 31 H 0.419 0.581 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.369 -0.484 5.961 6.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.175 4.175 3 Si 0.676 3.324 4 C -0.175 4.175 5 C -0.030 4.030 6 N -0.244 5.244 7 C 0.143 3.857 8 N -0.326 5.326 9 C 0.024 3.976 10 H 0.114 0.886 11 C -0.182 4.182 12 C -0.083 4.083 13 H 0.135 0.865 14 C -0.052 4.052 15 C -0.114 4.114 16 C -0.117 4.117 17 C -0.080 4.080 18 Cl -0.032 7.032 19 C -0.070 4.070 20 Cl -0.031 7.031 21 C -0.119 4.119 22 C -0.167 4.167 23 C -0.054 4.054 24 F -0.113 7.113 25 C -0.063 4.063 26 H 0.257 0.743 27 H 0.119 0.881 28 H -0.210 1.210 29 H -0.222 1.222 30 H 0.173 0.827 31 H 0.258 0.742 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.181 0.819 35 H 0.175 0.825 36 H 0.169 0.831 37 H 0.122 0.878 38 H 0.104 0.896 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.991 0.419 4.105 4.581 hybrid contribution -0.091 -1.330 -0.209 1.349 sum -2.082 -0.911 3.896 4.510 Atomic orbital electron populations 1.86433 1.17105 1.82451 1.51553 1.24594 0.85962 1.10716 0.96215 0.94153 0.77625 0.75408 0.85218 1.20270 1.03082 0.94613 0.99552 1.22329 0.93311 0.98944 0.88423 1.67251 1.27075 1.08128 1.21964 1.18520 0.90353 0.88954 0.87856 1.44222 1.53894 1.14619 1.19893 1.21873 0.90102 0.96713 0.88943 0.88609 1.23644 0.96752 0.98930 0.98841 1.21634 0.93482 0.99881 0.93330 0.86528 1.19891 0.96364 0.92310 0.96666 1.21471 0.96403 0.98478 0.95020 1.21332 0.95481 0.97701 0.97201 1.21036 0.96674 0.94237 0.96052 1.98401 1.54407 1.98163 1.52239 1.20934 0.98868 0.87350 0.99879 1.98404 1.77030 1.39146 1.88516 1.21050 0.94515 1.00941 0.95361 1.23430 0.98503 0.99285 0.95446 1.18085 1.07163 0.80981 0.99186 1.91481 1.92232 1.33532 1.94014 1.21491 0.95684 0.94349 0.94820 0.74302 0.88149 1.20993 1.22188 0.82705 0.74191 0.91420 0.88344 0.81896 0.82467 0.83052 0.87834 0.89633 0.81677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 1.65 12.75 -148.98 -1.90 -0.25 16 2 C -0.06 0.21 2.83 71.24 0.20 0.41 16 3 Si 0.77 -3.40 29.82 68.60 2.05 -1.35 16 4 C -0.17 -0.51 5.43 -19.77 -0.11 -0.62 16 5 C 0.13 0.70 9.84 84.60 0.83 1.53 16 6 N -0.53 -3.76 9.13 -193.04 -1.76 -5.52 16 7 C 0.38 1.92 7.49 133.08 1.00 2.92 16 8 N -0.69 -0.04 5.42 -321.35 -1.74 -1.78 16 9 C 0.13 -0.24 4.37 45.61 0.20 -0.04 16 10 H 0.10 0.14 7.41 -2.39 -0.02 0.12 16 11 C -0.14 0.47 7.26 31.21 0.23 0.69 16 12 C -0.07 0.38 3.86 -11.01 -0.04 0.34 16 13 H 0.12 -0.95 8.09 -2.39 -0.02 -0.97 16 14 C -0.05 0.17 5.29 -19.87 -0.11 0.06 16 15 C -0.10 0.38 9.71 22.27 0.22 0.60 16 16 C -0.10 0.12 9.83 22.29 0.22 0.34 16 17 C -0.05 -0.16 6.32 22.35 0.14 -0.02 16 18 Cl -0.06 -0.29 27.96 -2.72 -0.08 -0.37 16 19 C -0.04 -0.13 6.32 22.35 0.14 0.01 16 20 Cl -0.06 -0.29 27.96 -2.72 -0.08 -0.37 16 21 C -0.10 0.06 8.38 22.29 0.19 0.25 16 22 C -0.13 0.70 7.28 31.12 0.23 0.92 16 23 C -0.03 -0.13 7.35 22.59 0.17 0.04 16 24 F -0.13 -0.60 16.65 44.97 0.75 0.15 16 25 C -0.04 -0.12 9.75 22.48 0.22 0.10 16 26 H 0.41 -5.41 8.74 -74.06 -0.65 -6.06 16 27 H 0.10 -0.78 7.96 -2.39 -0.02 -0.80 16 28 H -0.28 -0.21 7.11 99.48 0.71 0.50 16 29 H -0.29 -0.99 7.11 99.48 0.71 -0.28 16 30 H 0.16 0.59 4.88 -2.91 -0.01 0.58 16 31 H 0.42 -1.28 8.17 -92.71 -0.76 -2.04 16 32 H 0.07 -0.06 8.14 -2.38 -0.02 -0.08 16 33 H 0.10 -0.36 6.32 -2.39 -0.02 -0.38 16 34 H 0.16 -1.50 8.05 -2.91 -0.02 -1.53 16 35 H 0.16 -0.72 8.06 -2.91 -0.02 -0.75 16 36 H 0.15 -0.46 6.67 -2.91 -0.02 -0.48 16 37 H 0.10 -0.58 7.71 -2.39 -0.02 -0.60 16 38 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 39 H 0.17 -0.07 8.06 -2.91 -0.02 -0.09 16 Total: 0.00 -16.08 361.63 0.73 -15.35 By element: Atomic # 1 Polarization: -13.18 SS G_CDS: -0.22 Total: -13.40 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 3.72 Total: 7.54 kcal Atomic # 7 Polarization: -3.80 SS G_CDS: -3.50 Total: -7.30 kcal Atomic # 8 Polarization: 1.65 SS G_CDS: -1.90 Total: -0.25 kcal Atomic # 9 Polarization: -0.60 SS G_CDS: 0.75 Total: 0.15 kcal Atomic # 14 Polarization: -3.40 SS G_CDS: 2.05 Total: -1.35 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.15 Total: -0.74 kcal Total: -16.08 0.73 -15.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9750036_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.138 kcal (2) G-P(sol) polarization free energy of solvation -16.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds