Wall clock time and date at job start Tue Mar 9 2021 13:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47025 * 2 1 4 4 C 1.86301 * 109.47181 * 240.00255 * 2 1 3 5 5 C 1.86795 * 109.47192 * 120.00181 * 2 1 3 6 6 C 1.38234 * 120.00205 * 89.99958 * 5 2 1 7 7 C 1.38234 * 120.00240 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00037 * 0.26327 * 7 6 5 9 9 C 1.50693 * 120.00207 * 179.72405 * 8 7 6 10 10 O 1.42906 * 109.47463 * 89.99418 * 9 8 7 11 11 C 1.35894 * 117.00187 * 180.02562 * 10 9 8 12 12 C 1.38706 * 120.05451 * 180.02562 * 11 10 9 13 13 C 1.38170 * 119.94522 * 179.97438 * 12 11 10 14 14 C 1.50696 * 119.97567 * 180.02562 * 13 12 11 15 15 O 1.42896 * 109.47454 * 120.00161 * 14 13 12 16 16 Si 1.86306 * 109.46857 * 359.97438 * 14 13 12 17 17 H 1.48495 * 109.46841 * 60.00351 * 16 14 13 18 18 H 1.48510 * 109.46827 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47250 * 299.99876 * 16 14 13 20 20 C 1.38243 * 120.05549 * 359.97438 * 13 12 11 21 21 C 1.38292 * 120.11052 * 0.02562 * 20 13 12 22 22 C 1.50698 * 119.97057 * 179.97438 * 21 20 13 23 23 F 1.39895 * 109.47086 * 90.00237 * 22 21 20 24 24 F 1.39907 * 109.46852 * 210.00080 * 22 21 20 25 25 F 1.39894 * 109.47522 * 329.99815 * 22 21 20 26 26 C 1.38127 * 120.05546 * 359.68259 * 21 20 13 27 27 C 1.38238 * 119.99752 * 359.47832 * 8 7 6 28 28 C 1.38234 * 120.00005 * 0.52168 * 27 8 7 29 29 H 1.08999 * 109.47282 * 299.99957 * 1 2 3 30 30 H 1.08997 * 109.47709 * 59.99667 * 1 2 3 31 31 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47270 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47416 * 300.00195 * 3 2 1 34 34 H 1.09006 * 109.46995 * 60.00292 * 3 2 1 35 35 H 1.09002 * 109.46976 * 300.00577 * 4 2 1 36 36 H 1.09005 * 109.47230 * 59.99829 * 4 2 1 37 37 H 1.08998 * 109.47233 * 179.97438 * 4 2 1 38 38 H 1.07999 * 119.99751 * 359.97438 * 6 5 2 39 39 H 1.08002 * 119.99744 * 179.97438 * 7 6 5 40 40 H 1.09000 * 109.47097 * 209.99342 * 9 8 7 41 41 H 1.09001 * 109.47081 * 329.99847 * 9 8 7 42 42 H 1.08003 * 120.02931 * 359.97438 * 12 11 10 43 43 H 1.09003 * 109.47127 * 240.00206 * 14 13 12 44 44 H 0.96696 * 113.99916 * 300.00213 * 15 14 13 45 45 H 1.08001 * 119.94597 * 179.97438 * 20 13 12 46 46 H 1.07995 * 120.03248 * 180.31898 * 26 21 20 47 47 H 1.07999 * 119.99927 * 180.24100 * 27 8 7 48 48 H 1.08001 * 120.00310 * 179.72165 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4011 -2.1851 3.7844 9 6 3.8969 -2.8966 5.0167 10 8 5.3259 -2.8972 5.0240 11 6 5.9373 -3.5042 6.0749 12 6 7.3221 -3.5413 6.1462 13 6 7.9414 -4.1586 7.2160 14 6 9.4457 -4.1988 7.2944 15 8 9.8786 -3.5389 8.4856 16 14 10.1682 -3.3372 5.8088 17 1 9.7114 -1.9245 5.7854 18 1 11.6507 -3.3763 5.8864 19 1 9.7185 -4.0236 4.5712 20 6 7.1821 -4.7384 8.2152 21 6 5.8013 -4.7027 8.1465 22 6 4.9767 -5.3363 9.2372 23 9 4.7181 -4.3907 10.2352 24 9 3.7671 -5.7922 8.7021 25 9 5.6791 -6.4141 9.7866 26 6 5.1774 -4.0816 7.0821 27 6 3.1758 -0.8216 3.8171 28 6 2.7155 -0.1698 2.6883 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.5739 1.7565 -0.0005 33 1 2.1206 2.2703 -0.8899 34 1 2.1206 2.2703 0.8901 35 1 2.1206 -1.9058 -1.5212 36 1 2.1206 -0.3643 -2.4112 37 1 3.5740 -0.8778 -1.5214 38 1 2.5356 -2.7987 0.5825 39 1 3.3559 -3.9596 2.5930 40 1 3.5293 -2.3833 5.9053 41 1 3.5332 -3.9242 5.0141 42 1 7.9158 -3.0881 5.3660 43 1 9.7811 -5.2358 7.3112 44 1 9.6148 -2.6101 8.5387 45 1 7.6680 -5.2208 9.0504 46 1 4.0991 -4.0495 7.0315 47 1 3.3550 -0.2663 4.7259 48 1 2.5351 0.8947 2.7151 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_10339940_9403676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:58:30 Heat of formation + Delta-G solvation = -215.109937 kcal Electronic energy + Delta-G solvation = -32370.067895 eV Core-core repulsion = 27484.490198 eV Total energy + Delta-G solvation = -4885.577697 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 384.128 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -51.14792 -48.66265 -48.60476 -41.69599 -40.25924 -39.11941 -37.51927 -33.78389 -33.17158 -31.96506 -31.33298 -29.63069 -28.49612 -28.46423 -27.94160 -27.30282 -26.64207 -23.56713 -23.40458 -22.85779 -21.89736 -19.96844 -19.47858 -19.46213 -18.26285 -18.07063 -17.73176 -17.43506 -17.22138 -16.81786 -16.32171 -15.97169 -15.90879 -15.64590 -15.50023 -15.40087 -15.04382 -14.99419 -14.79651 -14.75398 -14.64892 -14.44420 -14.24921 -14.19994 -13.98328 -13.92736 -13.82569 -13.70613 -13.56995 -13.35212 -13.31124 -13.29879 -13.15341 -12.89413 -12.52610 -12.38004 -12.29225 -12.15894 -11.94540 -11.84550 -11.10176 -10.95927 -10.90606 -10.68337 -10.36070 -9.86051 -9.77897 -9.54345 -0.38415 0.01663 0.07061 0.46825 1.00935 1.36050 1.43281 1.58705 1.63751 1.78583 1.79204 1.83670 2.08445 2.16618 2.48571 2.63656 2.91686 2.95501 3.28810 3.38963 3.42768 3.59143 3.66436 3.67573 3.86182 3.92045 3.98253 4.05477 4.11783 4.19981 4.30091 4.42815 4.48494 4.60033 4.65226 4.66282 4.70539 4.70577 4.70880 4.71658 4.80257 4.89128 4.91486 5.03260 5.07169 5.26255 5.32163 5.40345 5.44299 5.48967 5.52924 5.55262 6.02499 6.08115 6.40516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.359 4.359 6 C -0.092 4.092 7 C -0.105 4.105 8 C -0.091 4.091 9 C 0.097 3.903 10 O -0.301 6.301 11 C 0.141 3.859 12 C -0.127 4.127 13 C -0.081 4.081 14 C -0.080 4.080 15 O -0.534 6.534 16 Si 0.946 3.054 17 H -0.248 1.248 18 H -0.249 1.249 19 H -0.247 1.247 20 C -0.080 4.080 21 C -0.140 4.140 22 C 0.509 3.491 23 F -0.173 7.173 24 F -0.176 7.176 25 F -0.172 7.172 26 C -0.160 4.160 27 C -0.105 4.105 28 C -0.092 4.092 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.139 0.861 43 H 0.126 0.874 44 H 0.379 0.621 45 H 0.145 0.855 46 H 0.144 0.856 47 H 0.121 0.879 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 2.074 -3.384 4.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.401 4.401 6 C -0.109 4.109 7 C -0.123 4.123 8 C -0.091 4.091 9 C 0.022 3.978 10 O -0.215 6.215 11 C 0.095 3.905 12 C -0.145 4.145 13 C -0.081 4.081 14 C -0.191 4.191 15 O -0.339 6.339 16 Si 0.768 3.232 17 H -0.171 1.171 18 H -0.172 1.172 19 H -0.171 1.171 20 C -0.098 4.098 21 C -0.142 4.142 22 C 0.455 3.545 23 F -0.154 7.154 24 F -0.157 7.157 25 F -0.154 7.154 26 C -0.178 4.178 27 C -0.123 4.123 28 C -0.109 4.109 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.156 0.844 43 H 0.144 0.856 44 H 0.226 0.774 45 H 0.163 0.837 46 H 0.161 0.839 47 H 0.139 0.861 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.109 1.951 -4.059 4.505 hybrid contribution -0.857 -0.063 0.793 1.169 sum -0.966 1.889 -3.266 3.894 Atomic orbital electron populations 1.26123 1.20385 1.04610 1.04547 0.78188 0.66882 0.66136 0.63649 1.26137 1.06492 1.18526 1.04609 1.26138 1.06492 1.08058 1.15079 1.27507 1.02819 0.99524 1.10236 1.21089 0.97424 0.94677 0.97753 1.21155 0.98689 0.99942 0.92517 1.19399 1.01319 0.94180 0.94221 1.21754 0.78126 1.00813 0.97064 1.86216 1.21509 1.72438 1.41291 1.18637 0.91757 0.93016 0.87107 1.20549 0.92106 1.02218 0.99645 1.20110 0.96839 0.97353 0.93834 1.25023 0.91045 1.04310 0.98706 1.86546 1.78745 1.28663 1.39928 0.85721 0.80921 0.80372 0.76235 1.17124 1.17249 1.17055 1.20727 0.91030 0.98556 0.99478 1.19771 0.94641 1.03880 0.95861 1.18226 0.78116 0.76583 0.81602 1.93250 1.94313 1.64571 1.63314 1.93207 1.47083 1.89482 1.85962 1.93219 1.78501 1.56773 1.86878 1.21037 1.01032 1.01313 0.94461 1.21153 0.98710 0.93478 0.98975 1.21089 0.97434 0.99820 0.92606 0.91156 0.90972 0.91152 0.91035 0.90900 0.91157 0.91155 0.90900 0.91034 0.85807 0.86048 0.90662 0.90600 0.84362 0.85591 0.77380 0.83694 0.83862 0.86064 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.86 8.65 101.05 0.87 1.74 16 2 Si 1.06 -3.09 12.32 -169.99 -2.09 -5.19 16 3 C -0.45 0.96 8.53 101.05 0.86 1.82 16 4 C -0.45 0.96 8.53 101.05 0.86 1.82 16 5 C -0.36 0.24 4.59 -39.58 -0.18 0.06 16 6 C -0.09 0.02 9.29 -39.58 -0.37 -0.35 16 7 C -0.10 -0.04 9.70 -39.58 -0.38 -0.43 16 8 C -0.09 -0.06 5.51 -104.63 -0.58 -0.63 16 9 C 0.10 -0.04 4.86 36.00 0.18 0.14 16 10 O -0.30 -0.41 10.12 -19.41 -0.20 -0.60 16 11 C 0.14 0.13 6.69 -39.22 -0.26 -0.14 16 12 C -0.13 -0.04 8.61 -39.43 -0.34 -0.38 16 13 C -0.08 0.02 5.39 -104.65 -0.56 -0.54 16 14 C -0.08 0.11 2.82 36.00 0.10 0.21 16 15 O -0.53 0.39 12.77 -35.23 -0.45 -0.06 16 16 Si 0.95 -1.17 25.07 -169.99 -4.26 -5.43 16 17 H -0.25 0.22 7.11 56.52 0.40 0.62 16 18 H -0.25 -0.03 7.11 56.52 0.40 0.37 16 19 H -0.25 0.13 7.11 56.52 0.40 0.54 16 20 C -0.08 -0.03 8.96 -39.56 -0.35 -0.38 16 21 C -0.14 -0.13 5.45 -104.64 -0.57 -0.70 16 22 C 0.51 0.84 3.36 36.00 0.12 0.96 16 23 F -0.17 -0.42 17.30 2.25 0.04 -0.38 16 24 F -0.18 -0.35 16.47 2.25 0.04 -0.31 16 25 F -0.17 -0.38 16.46 2.25 0.04 -0.34 16 26 C -0.16 -0.07 8.39 -39.43 -0.33 -0.40 16 27 C -0.11 -0.04 9.70 -39.58 -0.38 -0.42 16 28 C -0.09 0.02 9.29 -39.58 -0.37 -0.35 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 34 H 0.07 -0.16 7.69 -51.93 -0.40 -0.56 16 35 H 0.07 -0.16 7.69 -51.93 -0.40 -0.56 16 36 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 37 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 38 H 0.12 -0.25 7.43 -52.49 -0.39 -0.64 16 39 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 40 H 0.08 -0.13 7.59 -51.93 -0.39 -0.52 16 41 H 0.08 -0.12 7.62 -51.93 -0.40 -0.52 16 42 H 0.14 -0.07 4.88 -52.48 -0.26 -0.32 16 43 H 0.13 -0.31 7.96 -51.93 -0.41 -0.72 16 44 H 0.38 -1.46 8.70 45.56 0.40 -1.07 16 45 H 0.15 -0.03 7.60 -52.49 -0.40 -0.43 16 46 H 0.14 -0.14 5.85 -52.49 -0.31 -0.44 16 47 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 48 H 0.12 -0.26 7.43 -52.49 -0.39 -0.65 16 LS Contribution 412.45 15.07 6.22 6.22 Total: 0.00 -5.67 412.45 -8.24 -13.91 By element: Atomic # 1 Polarization: -3.96 SS G_CDS: -5.88 Total: -9.84 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -1.69 Total: 2.02 kcal Atomic # 8 Polarization: -0.02 SS G_CDS: -0.65 Total: -0.66 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.11 Total: -1.03 kcal Atomic # 14 Polarization: -4.26 SS G_CDS: -6.36 Total: -10.62 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -5.67 -8.24 -13.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10339940_9403676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.199 kcal (2) G-P(sol) polarization free energy of solvation -5.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds