Wall clock time and date at job start Tue Mar 9 2021 17:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47129 * 2 1 4 4 C 1.53001 * 109.47125 * 240.00175 * 2 1 3 5 5 Si 1.86300 * 109.47358 * 119.99694 * 2 1 3 6 6 C 1.86298 * 109.47330 * 300.00602 * 5 2 1 7 7 C 1.86295 * 109.47263 * 180.02562 * 5 2 1 8 8 O 1.63103 * 109.47020 * 60.00317 * 5 2 1 9 9 C 1.42891 * 114.00415 * 180.02562 * 8 5 2 10 10 C 1.52994 * 109.47531 * 180.02562 * 9 8 5 11 11 O 1.42900 * 109.47313 * 64.99383 * 10 9 8 12 12 C 1.36004 * 117.00223 * 179.97438 * 11 10 9 13 13 C 1.38814 * 120.06830 * 90.00534 * 12 11 10 14 14 F 1.35097 * 120.03467 * 359.97438 * 13 12 11 15 15 C 1.38393 * 119.93405 * 180.02562 * 13 12 11 16 16 C 1.38229 * 120.06742 * 0.02562 * 15 13 12 17 17 C 1.38278 * 120.13976 * 0.02562 * 16 15 13 18 18 C 1.50699 * 119.96488 * 179.97438 * 17 16 15 19 19 O 1.42903 * 109.47294 * 255.00062 * 18 17 16 20 20 Si 1.86301 * 109.47146 * 15.00018 * 18 17 16 21 21 H 1.48506 * 109.47302 * 299.99754 * 20 18 17 22 22 H 1.48503 * 109.47334 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47376 * 59.99883 * 20 18 17 24 24 C 1.38342 * 120.06854 * 0.25422 * 17 16 15 25 25 F 1.35100 * 120.03602 * 179.70543 * 24 17 16 26 26 H 1.08994 * 109.46890 * 299.99906 * 1 2 3 27 27 H 1.08999 * 109.46790 * 60.00306 * 1 2 3 28 28 H 1.08998 * 109.46671 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47490 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46748 * 300.00000 * 3 2 1 31 31 H 1.08998 * 109.46839 * 59.99860 * 3 2 1 32 32 H 1.08994 * 109.46976 * 299.99449 * 4 2 1 33 33 H 1.08994 * 109.47249 * 60.00234 * 4 2 1 34 34 H 1.09010 * 109.46964 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47385 * 179.97438 * 6 5 2 36 36 H 1.09011 * 109.46826 * 299.99704 * 6 5 2 37 37 H 1.09000 * 109.47218 * 59.99199 * 6 5 2 38 38 H 1.09008 * 109.47198 * 299.99851 * 7 5 2 39 39 H 1.08998 * 109.47371 * 59.99972 * 7 5 2 40 40 H 1.08996 * 109.47287 * 180.02562 * 7 5 2 41 41 H 1.09002 * 109.47261 * 59.99588 * 9 8 5 42 42 H 1.09004 * 109.47000 * 299.99647 * 9 8 5 43 43 H 1.09003 * 109.47044 * 305.00115 * 10 9 8 44 44 H 1.09001 * 109.47691 * 184.99961 * 10 9 8 45 45 H 1.08004 * 119.96625 * 179.97438 * 15 13 12 46 46 H 1.08007 * 119.93107 * 179.97438 * 16 15 13 47 47 H 1.09002 * 109.47485 * 134.99971 * 18 17 16 48 48 H 0.96698 * 113.99836 * 60.00254 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1511 -0.8781 1.5212 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8774 1.5215 8 8 1.6075 -2.4159 1.5212 9 6 2.0286 -3.1813 2.6520 10 6 1.4640 -4.5993 2.5470 11 8 2.0332 -5.2561 1.4127 12 6 1.6345 -6.5344 1.1748 13 6 0.5331 -6.7804 0.3665 14 9 -0.1448 -5.7500 -0.1846 15 6 0.1295 -8.0823 0.1268 16 6 0.8217 -9.1371 0.6916 17 6 1.9186 -8.8954 1.4980 18 6 2.6700 -10.0483 2.1123 19 8 2.3492 -10.1396 3.5019 20 14 2.1852 -11.6312 1.2578 21 1 0.7251 -11.8518 1.4154 22 1 2.9261 -12.7672 1.8626 23 1 2.5185 -11.5363 -0.1862 24 6 2.3235 -7.5960 1.7462 25 9 3.3917 -7.3604 2.5391 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6768 -1.7488 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1301 -0.7216 -1.2490 35 1 1.8930 -0.5140 3.9323 36 1 1.8933 1.0278 3.0423 37 1 0.4400 0.0000 3.0422 38 1 4.3778 -1.3911 0.6315 39 1 4.3770 0.1503 1.5217 40 1 4.3774 -1.3916 2.4113 41 1 1.6638 -2.7112 3.5652 42 1 3.1175 -3.2252 2.6758 43 1 0.3809 -4.5516 2.4335 44 1 1.7103 -5.1564 3.4509 45 1 -0.7276 -8.2743 -0.5017 46 1 0.5045 -10.1523 0.5033 47 1 3.7417 -9.8864 1.9967 48 1 1.4098 -10.2840 3.6800 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_14032924_10902662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:13:43 Heat of formation + Delta-G solvation = -232.284850 kcal Electronic energy + Delta-G solvation = -29703.653938 eV Core-core repulsion = 25325.470208 eV Total energy + Delta-G solvation = -4378.183731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.01129 -49.97630 -40.85493 -39.40982 -37.89088 -37.25224 -36.80204 -32.36913 -31.81342 -30.13863 -29.33392 -29.06943 -27.83442 -27.35440 -26.86583 -24.50869 -23.69017 -22.89782 -20.39623 -19.60853 -19.02806 -18.87884 -18.12338 -17.74499 -17.49639 -16.76299 -16.49725 -16.31831 -16.21181 -15.95421 -15.84511 -15.81108 -15.67888 -15.19888 -14.96007 -14.83337 -14.70165 -14.42193 -14.30405 -13.95021 -13.58759 -13.52958 -13.40613 -13.25878 -13.19907 -12.96968 -12.91686 -12.89180 -12.68927 -12.38017 -12.34407 -12.26173 -11.92824 -11.86442 -11.67333 -11.55556 -11.30415 -11.12967 -10.58534 -10.36077 -10.04641 -9.94752 -9.88908 -0.41542 -0.28914 0.96752 1.27399 1.40594 1.45323 1.75508 1.78947 1.87692 2.07053 2.35845 2.45053 2.71669 3.17984 3.28929 3.37425 3.55707 3.74152 3.89861 4.01961 4.09690 4.14960 4.15333 4.20714 4.31575 4.44350 4.50608 4.56919 4.58885 4.63399 4.66998 4.71130 4.72848 4.74709 4.77260 4.83473 4.86070 4.89243 5.03232 5.13596 5.14409 5.20132 5.30402 5.36106 5.39658 5.44915 5.53708 5.54557 5.62309 6.25618 6.40383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.373 4.373 3 C -0.136 4.136 4 C -0.134 4.134 5 Si 1.285 2.715 6 C -0.511 4.511 7 C -0.510 4.510 8 O -0.617 6.617 9 C 0.089 3.911 10 C 0.060 3.940 11 O -0.306 6.306 12 C 0.028 3.972 13 C 0.122 3.878 14 F -0.116 7.116 15 C -0.147 4.147 16 C -0.076 4.076 17 C -0.158 4.158 18 C -0.082 4.082 19 O -0.532 6.532 20 Si 0.955 3.045 21 H -0.248 1.248 22 H -0.248 1.248 23 H -0.245 1.245 24 C 0.140 3.860 25 F -0.113 7.113 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.153 0.847 46 H 0.147 0.853 47 H 0.122 0.878 48 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 -2.134 1.046 3.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.416 2.584 6 C -0.613 4.613 7 C -0.612 4.612 8 O -0.576 6.576 9 C 0.013 3.987 10 C -0.014 4.014 11 O -0.223 6.223 12 C -0.018 4.018 13 C 0.101 3.899 14 F -0.094 7.094 15 C -0.166 4.166 16 C -0.093 4.093 17 C -0.159 4.159 18 C -0.192 4.192 19 O -0.337 6.337 20 Si 0.776 3.224 21 H -0.172 1.172 22 H -0.171 1.171 23 H -0.168 1.168 24 C 0.119 3.881 25 F -0.091 7.091 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.171 0.829 46 H 0.164 0.836 47 H 0.140 0.860 48 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.672 -2.820 0.464 3.311 hybrid contribution -0.261 1.149 0.379 1.238 sum -1.933 -1.671 0.843 2.690 Atomic orbital electron populations 1.21507 0.93843 1.02022 1.01704 1.25762 1.00652 1.02545 1.12741 1.21557 1.00773 0.94933 1.02089 1.21505 1.00597 1.00360 0.96639 0.76768 0.63151 0.53417 0.65059 1.27043 1.07000 1.09564 1.17711 1.27023 1.25003 1.04617 1.04581 1.85410 1.79058 1.45928 1.47241 1.22047 0.99372 0.89617 0.87646 1.23088 0.98747 0.92118 0.87441 1.86236 1.66424 1.21421 1.48172 1.18649 0.96141 0.85601 1.01444 1.17839 0.90721 0.85113 0.96178 1.91588 1.77907 1.57087 1.82802 1.21154 1.02622 0.89880 1.02908 1.20920 0.93397 0.99989 0.95037 1.20421 0.99188 0.94077 1.02247 1.25013 1.03529 1.03358 0.87266 1.86591 1.30689 1.95340 1.21077 0.85614 0.80745 0.76149 0.79858 1.17181 1.17132 1.16789 1.17536 0.86623 0.92039 0.91878 1.91562 1.51915 1.95080 1.70576 0.92763 0.92822 0.92137 0.92528 0.92519 0.92565 0.92028 0.92857 0.92735 0.91513 0.90647 0.90861 0.90775 0.90784 0.91502 0.90426 0.91359 0.91252 0.91131 0.82944 0.83600 0.86039 0.77632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.10 7.85 37.16 0.29 0.19 16 2 C -0.37 -0.18 0.53 -90.61 -0.05 -0.23 16 3 C -0.14 0.01 7.85 37.16 0.29 0.30 16 4 C -0.13 -0.16 7.85 37.16 0.29 0.13 16 5 Si 1.28 -0.40 8.45 -169.99 -1.44 -1.84 16 6 C -0.51 0.29 8.50 101.05 0.86 1.15 16 7 C -0.51 -0.10 8.50 101.05 0.86 0.76 16 8 O -0.62 -0.89 8.52 -40.09 -0.34 -1.23 16 9 C 0.09 -0.01 5.50 37.15 0.20 0.20 16 10 C 0.06 0.05 6.44 37.15 0.24 0.29 16 11 O -0.31 -1.06 9.75 -24.61 -0.24 -1.30 16 12 C 0.03 0.07 5.74 -39.14 -0.22 -0.16 16 13 C 0.12 0.19 7.31 -39.31 -0.29 -0.10 16 14 F -0.12 -0.35 17.11 2.25 0.04 -0.31 16 15 C -0.15 0.16 10.02 -39.53 -0.40 -0.24 16 16 C -0.08 0.13 8.65 -39.57 -0.34 -0.21 16 17 C -0.16 0.04 5.26 -104.57 -0.55 -0.51 16 18 C -0.08 0.09 2.45 36.01 0.09 0.18 16 19 O -0.53 0.21 12.88 -35.23 -0.45 -0.25 16 20 Si 0.96 -2.08 25.49 -169.99 -4.33 -6.42 16 21 H -0.25 0.73 6.73 56.52 0.38 1.11 16 22 H -0.25 0.12 7.11 56.52 0.40 0.52 16 23 H -0.24 0.39 7.11 56.52 0.40 0.79 16 24 C 0.14 0.25 7.25 -39.31 -0.29 -0.03 16 25 F -0.11 -0.36 16.60 2.25 0.04 -0.32 16 26 H 0.05 0.00 7.79 -51.93 -0.40 -0.41 16 27 H 0.05 0.05 8.14 -51.93 -0.42 -0.37 16 28 H 0.06 0.07 7.97 -51.93 -0.41 -0.34 16 29 H 0.06 -0.04 7.79 -51.93 -0.40 -0.44 16 30 H 0.06 0.02 8.14 -51.93 -0.42 -0.41 16 31 H 0.06 -0.04 7.79 -51.93 -0.40 -0.45 16 32 H 0.06 0.12 7.96 -51.93 -0.41 -0.29 16 33 H 0.05 0.07 8.14 -51.93 -0.42 -0.36 16 34 H 0.05 0.04 7.79 -51.92 -0.40 -0.37 16 35 H 0.07 -0.07 7.48 -51.93 -0.39 -0.46 16 36 H 0.07 -0.06 7.79 -51.92 -0.40 -0.46 16 37 H 0.07 -0.03 7.79 -51.93 -0.40 -0.43 16 38 H 0.07 0.06 7.79 -51.92 -0.40 -0.34 16 39 H 0.07 -0.02 7.79 -51.93 -0.40 -0.42 16 40 H 0.07 -0.01 7.48 -51.93 -0.39 -0.40 16 41 H 0.08 -0.21 7.21 -51.93 -0.37 -0.58 16 42 H 0.07 -0.05 7.22 -51.93 -0.37 -0.42 16 43 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 44 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 45 H 0.15 -0.50 8.06 -52.48 -0.42 -0.93 16 46 H 0.15 -0.57 4.88 -52.48 -0.26 -0.82 16 47 H 0.12 -0.13 7.91 -51.93 -0.41 -0.54 16 48 H 0.38 -1.57 8.70 45.56 0.40 -1.18 16 LS Contribution 397.34 15.07 5.99 5.99 Total: 0.00 -5.88 397.34 -6.96 -12.85 By element: Atomic # 1 Polarization: -1.67 SS G_CDS: -7.21 Total: -8.88 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 0.99 Total: 1.71 kcal Atomic # 8 Polarization: -1.74 SS G_CDS: -1.04 Total: -2.78 kcal Atomic # 9 Polarization: -0.71 SS G_CDS: 0.08 Total: -0.64 kcal Atomic # 14 Polarization: -2.48 SS G_CDS: -5.77 Total: -8.25 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -5.88 -6.96 -12.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_14032924_10902662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -219.439 kcal (2) G-P(sol) polarization free energy of solvation -5.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds