Wall clock time and date at job start Tue Mar 9 2021 17:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47129 * 2 1 4 4 C 1.53001 * 109.47125 * 240.00175 * 2 1 3 5 5 Si 1.86300 * 109.47358 * 119.99694 * 2 1 3 6 6 C 1.86298 * 109.47330 * 300.00602 * 5 2 1 7 7 C 1.86295 * 109.47263 * 180.02562 * 5 2 1 8 8 O 1.63103 * 109.47020 * 60.00317 * 5 2 1 9 9 C 1.42891 * 114.00415 * 180.02562 * 8 5 2 10 10 C 1.52994 * 109.47531 * 180.02562 * 9 8 5 11 11 O 1.42900 * 109.47313 * 64.99383 * 10 9 8 12 12 C 1.36004 * 117.00223 * 179.97438 * 11 10 9 13 13 C 1.38814 * 120.06830 * 90.00534 * 12 11 10 14 14 F 1.35097 * 120.03467 * 359.97438 * 13 12 11 15 15 C 1.38393 * 119.93405 * 180.02562 * 13 12 11 16 16 C 1.38229 * 120.06742 * 0.02562 * 15 13 12 17 17 C 1.38278 * 120.13976 * 0.02562 * 16 15 13 18 18 C 1.50699 * 119.96488 * 179.97438 * 17 16 15 19 19 O 1.42903 * 109.47294 * 255.00062 * 18 17 16 20 20 Si 1.86301 * 109.47146 * 15.00018 * 18 17 16 21 21 H 1.48506 * 109.47302 * 299.99754 * 20 18 17 22 22 H 1.48503 * 109.47334 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47376 * 59.99883 * 20 18 17 24 24 C 1.38342 * 120.06854 * 0.25422 * 17 16 15 25 25 F 1.35100 * 120.03602 * 179.70543 * 24 17 16 26 26 H 1.08994 * 109.46890 * 299.99906 * 1 2 3 27 27 H 1.08999 * 109.46790 * 60.00306 * 1 2 3 28 28 H 1.08998 * 109.46671 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47490 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46748 * 300.00000 * 3 2 1 31 31 H 1.08998 * 109.46839 * 59.99860 * 3 2 1 32 32 H 1.08994 * 109.46976 * 299.99449 * 4 2 1 33 33 H 1.08994 * 109.47249 * 60.00234 * 4 2 1 34 34 H 1.09010 * 109.46964 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47385 * 179.97438 * 6 5 2 36 36 H 1.09011 * 109.46826 * 299.99704 * 6 5 2 37 37 H 1.09000 * 109.47218 * 59.99199 * 6 5 2 38 38 H 1.09008 * 109.47198 * 299.99851 * 7 5 2 39 39 H 1.08998 * 109.47371 * 59.99972 * 7 5 2 40 40 H 1.08996 * 109.47287 * 180.02562 * 7 5 2 41 41 H 1.09002 * 109.47261 * 59.99588 * 9 8 5 42 42 H 1.09004 * 109.47000 * 299.99647 * 9 8 5 43 43 H 1.09003 * 109.47044 * 305.00115 * 10 9 8 44 44 H 1.09001 * 109.47691 * 184.99961 * 10 9 8 45 45 H 1.08004 * 119.96625 * 179.97438 * 15 13 12 46 46 H 1.08007 * 119.93107 * 179.97438 * 16 15 13 47 47 H 1.09002 * 109.47485 * 134.99971 * 18 17 16 48 48 H 0.96698 * 113.99836 * 60.00254 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1511 -0.8781 1.5212 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8774 1.5215 8 8 1.6075 -2.4159 1.5212 9 6 2.0286 -3.1813 2.6520 10 6 1.4640 -4.5993 2.5470 11 8 2.0332 -5.2561 1.4127 12 6 1.6345 -6.5344 1.1748 13 6 0.5331 -6.7804 0.3665 14 9 -0.1448 -5.7500 -0.1846 15 6 0.1295 -8.0823 0.1268 16 6 0.8217 -9.1371 0.6916 17 6 1.9186 -8.8954 1.4980 18 6 2.6700 -10.0483 2.1123 19 8 2.3492 -10.1396 3.5019 20 14 2.1852 -11.6312 1.2578 21 1 0.7251 -11.8518 1.4154 22 1 2.9261 -12.7672 1.8626 23 1 2.5185 -11.5363 -0.1862 24 6 2.3235 -7.5960 1.7462 25 9 3.3917 -7.3604 2.5391 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6768 -1.7488 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1301 -0.7216 -1.2490 35 1 1.8930 -0.5140 3.9323 36 1 1.8933 1.0278 3.0423 37 1 0.4400 0.0000 3.0422 38 1 4.3778 -1.3911 0.6315 39 1 4.3770 0.1503 1.5217 40 1 4.3774 -1.3916 2.4113 41 1 1.6638 -2.7112 3.5652 42 1 3.1175 -3.2252 2.6758 43 1 0.3809 -4.5516 2.4335 44 1 1.7103 -5.1564 3.4509 45 1 -0.7276 -8.2743 -0.5017 46 1 0.5045 -10.1523 0.5033 47 1 3.7417 -9.8864 1.9967 48 1 1.4098 -10.2840 3.6800 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_14032924_10902662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:13:42 Heat of formation + Delta-G solvation = -225.289977 kcal Electronic energy + Delta-G solvation = -29703.350618 eV Core-core repulsion = 25325.470208 eV Total energy + Delta-G solvation = -4377.880410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.14861 -50.10623 -40.88931 -39.42853 -37.88255 -37.23312 -36.84700 -32.36071 -31.81241 -30.16136 -29.32064 -29.08540 -27.85222 -27.40509 -26.82447 -24.51412 -23.69477 -22.90082 -20.44229 -19.66569 -19.07745 -18.91029 -18.10705 -17.75461 -17.58177 -16.81287 -16.55351 -16.34388 -16.24279 -15.94986 -15.87155 -15.81969 -15.63167 -15.24210 -14.94147 -14.87086 -14.76923 -14.45586 -14.24805 -13.96275 -13.58997 -13.54183 -13.38467 -13.23858 -13.18340 -12.98056 -12.96223 -12.92904 -12.67297 -12.42336 -12.25368 -12.11675 -11.90631 -11.72672 -11.72337 -11.57958 -11.31674 -11.19026 -10.48939 -10.35201 -10.07376 -9.97640 -9.91322 -0.42242 -0.29884 1.11859 1.47244 1.49372 1.58900 1.75936 1.89859 1.96416 2.11076 2.34176 2.45640 2.65992 3.20555 3.33646 3.51251 3.64491 3.81284 3.90776 4.03508 4.10147 4.10832 4.13523 4.21596 4.38619 4.44729 4.49330 4.58880 4.62460 4.70479 4.72024 4.74214 4.74984 4.77521 4.77842 4.79997 4.81517 4.88828 4.97752 5.07186 5.07292 5.17513 5.30743 5.35124 5.38326 5.41441 5.47433 5.57046 5.62336 6.18580 6.69132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.381 4.381 3 C -0.139 4.139 4 C -0.136 4.136 5 Si 1.308 2.692 6 C -0.512 4.512 7 C -0.518 4.518 8 O -0.638 6.638 9 C 0.079 3.921 10 C 0.054 3.946 11 O -0.330 6.330 12 C 0.013 3.987 13 C 0.100 3.900 14 F -0.130 7.130 15 C -0.132 4.132 16 C -0.067 4.067 17 C -0.151 4.151 18 C -0.091 4.091 19 O -0.551 6.551 20 Si 0.995 3.005 21 H -0.224 1.224 22 H -0.275 1.275 23 H -0.250 1.250 24 C 0.117 3.883 25 F -0.128 7.128 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.180 0.820 46 H 0.176 0.824 47 H 0.113 0.887 48 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.991 -2.918 1.407 4.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.424 4.424 3 C -0.196 4.196 4 C -0.193 4.193 5 Si 1.439 2.561 6 C -0.614 4.614 7 C -0.619 4.619 8 O -0.598 6.598 9 C 0.004 3.996 10 C -0.020 4.020 11 O -0.247 6.247 12 C -0.033 4.033 13 C 0.080 3.920 14 F -0.109 7.109 15 C -0.150 4.150 16 C -0.085 4.085 17 C -0.152 4.152 18 C -0.199 4.199 19 O -0.358 6.358 20 Si 0.816 3.184 21 H -0.147 1.147 22 H -0.200 1.200 23 H -0.174 1.174 24 C 0.097 3.903 25 F -0.107 7.107 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.123 0.877 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.198 0.802 46 H 0.193 0.807 47 H 0.131 0.869 48 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -2.602 -3.587 0.820 4.506 hybrid contribution 0.051 1.359 0.272 1.387 sum -2.551 -2.228 1.092 3.558 Atomic orbital electron populations 1.21523 0.94150 1.01561 1.02004 1.25895 1.00483 1.03108 1.12912 1.21595 1.01205 0.94475 1.02374 1.21518 1.00843 0.99759 0.97160 0.76353 0.62385 0.52736 0.64666 1.27006 1.07000 1.09858 1.17567 1.27115 1.25646 1.04900 1.04265 1.85399 1.79413 1.46823 1.48126 1.22294 0.99738 0.89246 0.88319 1.23266 0.98680 0.92738 0.87283 1.86185 1.67145 1.22177 1.49243 1.18877 0.96837 0.85441 1.02148 1.18097 0.91062 0.85850 0.96991 1.91545 1.78202 1.57965 1.83152 1.21480 1.02828 0.88636 1.02071 1.21231 0.92310 1.01158 0.93772 1.20638 0.99358 0.93366 1.01877 1.25263 1.03256 1.04149 0.87271 1.86553 1.32347 1.95416 1.21496 0.85064 0.81483 0.73372 0.78508 1.14671 1.20048 1.17377 1.17759 0.86853 0.92890 0.92793 1.91513 1.52718 1.95260 1.71171 0.91720 0.93270 0.92968 0.91944 0.93059 0.91492 0.93215 0.93162 0.92370 0.90659 0.90138 0.90861 0.91823 0.90193 0.91110 0.87666 0.91059 0.91437 0.89970 0.80236 0.80680 0.86893 0.75816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.32 7.85 71.98 0.56 0.25 16 2 C -0.38 -0.67 0.53 -10.79 -0.01 -0.68 16 3 C -0.14 -0.01 7.85 71.98 0.56 0.55 16 4 C -0.14 -0.54 7.85 71.98 0.56 0.03 16 5 Si 1.31 -0.26 8.45 68.60 0.58 0.31 16 6 C -0.51 0.95 8.50 113.37 0.96 1.92 16 7 C -0.52 -0.46 8.50 113.37 0.96 0.50 16 8 O -0.64 -2.55 8.52 -144.34 -1.23 -3.78 16 9 C 0.08 0.05 5.50 71.98 0.40 0.45 16 10 C 0.05 0.17 6.44 71.98 0.46 0.63 16 11 O -0.33 -3.00 9.75 -88.96 -0.87 -3.87 16 12 C 0.01 0.08 5.74 22.56 0.13 0.21 16 13 C 0.10 0.39 7.31 22.44 0.16 0.55 16 14 F -0.13 -0.99 17.11 44.97 0.77 -0.22 16 15 C -0.13 0.42 10.02 22.30 0.22 0.64 16 16 C -0.07 0.34 8.65 22.28 0.19 0.53 16 17 C -0.15 0.09 5.26 -19.83 -0.10 -0.01 16 18 C -0.09 0.20 2.45 71.24 0.17 0.37 16 19 O -0.55 0.40 12.88 -148.98 -1.92 -1.52 16 20 Si 1.00 -5.66 25.49 68.60 1.75 -3.92 16 21 H -0.22 2.10 6.73 99.48 0.67 2.77 16 22 H -0.28 0.28 7.11 99.48 0.71 0.99 16 23 H -0.25 1.18 7.11 99.48 0.71 1.88 16 24 C 0.12 0.58 7.25 22.44 0.16 0.74 16 25 F -0.13 -1.08 16.60 44.97 0.75 -0.33 16 26 H 0.06 0.00 7.79 -2.39 -0.02 -0.02 16 27 H 0.05 0.14 8.14 -2.39 -0.02 0.13 16 28 H 0.05 0.20 7.97 -2.39 -0.02 0.18 16 29 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 30 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.07 -0.14 7.79 -2.39 -0.02 -0.16 16 32 H 0.05 0.30 7.96 -2.39 -0.02 0.28 16 33 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.06 0.16 7.79 -2.38 -0.02 0.14 16 35 H 0.07 -0.26 7.48 -2.39 -0.02 -0.27 16 36 H 0.08 -0.21 7.79 -2.38 -0.02 -0.23 16 37 H 0.07 -0.11 7.79 -2.39 -0.02 -0.13 16 38 H 0.06 0.19 7.79 -2.38 -0.02 0.17 16 39 H 0.08 -0.04 7.79 -2.39 -0.02 -0.06 16 40 H 0.07 0.00 7.48 -2.39 -0.02 -0.02 16 41 H 0.11 -0.59 7.21 -2.39 -0.02 -0.60 16 42 H 0.07 -0.03 7.22 -2.38 -0.02 -0.05 16 43 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.18 -1.60 8.06 -2.91 -0.02 -1.62 16 46 H 0.18 -1.92 4.88 -2.91 -0.01 -1.94 16 47 H 0.11 -0.11 7.91 -2.39 -0.02 -0.13 16 48 H 0.39 -3.52 8.70 -74.06 -0.64 -4.16 16 Total: 0.00 -15.49 397.34 6.27 -9.22 By element: Atomic # 1 Polarization: -3.61 SS G_CDS: 1.03 Total: -2.58 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 5.42 Total: 6.69 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -4.02 Total: -9.18 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 1.52 Total: -0.55 kcal Atomic # 14 Polarization: -5.93 SS G_CDS: 2.33 Total: -3.60 kcal Total: -15.49 6.27 -9.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_14032924_10902662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -216.074 kcal (2) G-P(sol) polarization free energy of solvation -15.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds