Wall clock time and date at job start Tue Mar 9 2021 17:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38230 * 119.96127 * 254.99735 * 4 2 1 6 6 C 1.38274 * 120.13577 * 179.97438 * 5 4 2 7 7 C 1.38356 * 120.06924 * 0.03954 * 6 5 4 8 8 F 1.35097 * 120.03212 * 179.97438 * 7 6 5 9 9 C 1.38850 * 119.93183 * 359.97438 * 7 6 5 10 10 O 1.36012 * 120.07285 * 179.97438 * 9 7 6 11 11 C 1.42897 * 117.00075 * 89.99851 * 10 9 7 12 12 C 1.52999 * 109.47212 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47319 * 54.99616 * 12 11 10 14 14 C 1.52993 * 109.47108 * 175.00059 * 12 11 10 15 15 C 1.53000 * 109.47344 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47200 * 300.00136 * 15 14 12 17 17 H 1.09004 * 109.46776 * 300.00108 * 16 15 14 18 18 O 1.42900 * 109.47637 * 179.97438 * 16 15 14 19 19 C 1.53004 * 109.47375 * 59.99520 * 16 15 14 20 20 C 1.53002 * 109.46711 * 294.99624 * 12 11 10 21 21 C 1.38389 * 119.96628 * 74.72628 * 4 2 1 22 22 F 1.35102 * 120.03432 * 359.97438 * 21 4 2 23 23 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 24 24 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 25 25 H 1.48501 * 109.99918 * 178.67685 * 3 2 1 26 26 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 27 27 H 1.07997 * 119.93324 * 359.97438 * 5 4 2 28 28 H 1.07999 * 119.96718 * 180.02562 * 6 5 4 29 29 H 1.09010 * 109.47118 * 300.00107 * 11 10 9 30 30 H 1.08992 * 109.47174 * 60.00167 * 11 10 9 31 31 H 1.09004 * 109.47458 * 299.99947 * 14 12 11 32 32 H 1.09000 * 109.47392 * 59.99601 * 14 12 11 33 33 H 1.09000 * 109.46954 * 59.99636 * 15 14 12 34 34 H 1.09000 * 109.47321 * 180.02562 * 15 14 12 35 35 H 0.96696 * 114.00017 * 179.97438 * 18 16 15 36 36 H 1.08999 * 109.46826 * 59.99830 * 19 16 15 37 37 H 1.08999 * 109.47204 * 180.02562 * 19 16 15 38 38 H 1.09000 * 109.47222 * 300.00051 * 20 12 11 39 39 H 1.09000 * 109.46987 * 60.00378 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.4535 0.0176 2.2832 6 6 2.9148 -0.6304 3.4142 7 6 2.8556 -2.0103 3.4952 8 9 3.3070 -2.6428 4.6004 9 6 2.3317 -2.7445 2.4395 10 8 2.2726 -4.1012 2.5158 11 6 1.0849 -4.6685 3.0721 12 6 1.2018 -6.1940 3.0760 13 1 2.1108 -6.4874 3.6011 14 6 -0.0132 -6.7967 3.7839 15 6 0.1033 -8.3223 3.7873 16 6 0.1589 -8.8327 2.3461 17 1 -0.7501 -8.5388 1.8212 18 8 0.2684 -10.2575 2.3491 19 6 1.3740 -8.2299 1.6380 20 6 1.2577 -6.7048 1.6349 21 6 1.8638 -2.0905 1.3080 22 9 1.3476 -2.8009 0.2812 23 1 -0.3934 0.4418 0.7650 24 1 1.7924 -0.5139 -0.8899 25 1 3.5346 1.7702 0.0322 26 1 1.5616 2.4678 -1.2086 27 1 2.5014 1.0948 2.2220 28 1 3.3220 -0.0589 4.2351 29 1 0.9560 -4.3117 4.0941 30 1 0.2248 -4.3712 2.4723 31 1 -0.0532 -6.4328 4.8106 32 1 -0.9223 -6.5033 3.2589 33 1 1.0123 -8.6161 4.3121 34 1 -0.7626 -8.7517 4.2912 35 1 0.3083 -10.6508 1.4666 36 1 2.2830 -8.5237 2.1629 37 1 1.4134 -8.5932 0.6111 38 1 0.3487 -6.4113 1.1099 39 1 2.1233 -6.2754 1.1305 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_14032924_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:14:12 Heat of formation + Delta-G solvation = -193.351877 kcal Electronic energy + Delta-G solvation = -25179.362686 eV Core-core repulsion = 21110.385416 eV Total energy + Delta-G solvation = -4068.977270 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.11064 -50.05405 -41.02504 -40.20660 -39.08370 -37.52956 -36.64173 -32.53409 -32.09355 -31.85980 -30.80975 -26.92131 -26.56990 -24.28141 -23.75404 -23.04569 -22.33222 -20.90988 -19.60423 -19.01001 -18.79490 -18.18898 -17.95446 -17.54796 -16.80195 -16.67083 -16.53354 -16.21965 -16.12754 -15.81811 -15.59242 -15.51082 -15.43890 -14.80984 -14.65274 -14.46423 -14.12631 -13.84447 -13.46683 -13.32201 -13.24153 -13.16800 -12.92953 -12.47111 -12.32828 -12.15832 -12.12695 -11.72526 -11.67019 -11.25348 -11.06950 -10.72189 -10.62116 -10.01379 -9.96027 -5.20246 -0.47939 -0.35219 1.07803 1.51061 1.79870 1.85977 2.29118 2.62870 3.12794 3.16296 3.23464 3.33007 3.49228 3.59319 3.66893 3.69885 3.76315 4.02378 4.05837 4.14229 4.22111 4.28777 4.31610 4.40028 4.43370 4.45194 4.52828 4.54629 4.57682 4.66193 4.76508 4.79642 4.92328 5.02029 5.06690 5.12694 5.13690 5.23675 5.32674 5.40814 6.17758 6.40445 6.71283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.069 4.069 3 Si 0.694 3.306 4 C -0.157 4.157 5 C -0.062 4.062 6 C -0.146 4.146 7 C 0.118 3.882 8 F -0.119 7.119 9 C 0.029 3.971 10 O -0.315 6.315 11 C 0.067 3.933 12 C -0.086 4.086 13 H 0.085 0.915 14 C -0.110 4.110 15 C -0.111 4.111 16 C 0.103 3.897 17 H 0.055 0.945 18 O -0.569 6.569 19 C -0.152 4.152 20 C -0.110 4.110 21 C 0.138 3.862 22 F -0.114 7.114 23 H 0.379 0.621 24 H 0.117 0.883 25 H -0.252 1.252 26 H -0.249 1.249 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.379 0.621 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 4.537 2.030 5.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.179 4.179 3 Si 0.594 3.406 4 C -0.159 4.159 5 C -0.079 4.079 6 C -0.165 4.165 7 C 0.098 3.902 8 F -0.097 7.097 9 C -0.017 4.017 10 O -0.231 6.231 11 C -0.007 4.007 12 C -0.104 4.104 13 H 0.104 0.896 14 C -0.147 4.147 15 C -0.148 4.148 16 C 0.044 3.956 17 H 0.073 0.927 18 O -0.375 6.375 19 C -0.190 4.190 20 C -0.148 4.148 21 C 0.117 3.883 22 F -0.092 7.092 23 H 0.227 0.773 24 H 0.135 0.865 25 H -0.176 1.176 26 H -0.174 1.174 27 H 0.169 0.831 28 H 0.173 0.827 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.226 0.774 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.719 4.711 1.639 5.040 hybrid contribution 0.029 -0.915 -0.727 1.169 sum -0.689 3.796 0.912 3.964 Atomic orbital electron populations 1.86581 1.16529 1.81632 1.49113 1.25098 0.85680 1.10644 0.96475 0.94959 0.81231 0.76563 0.87872 1.20497 1.04155 0.92029 0.99171 1.20763 0.95809 1.00012 0.91326 1.21177 1.02985 0.91819 1.00515 1.17825 0.98785 0.90499 0.83076 1.91568 1.86093 1.82338 1.49728 1.18610 1.04803 0.84943 0.93381 1.86158 1.40259 1.13931 1.82799 1.23005 0.85810 0.94120 0.97796 1.21209 1.00137 0.91437 0.97652 0.89625 1.21475 0.97420 0.94780 1.01046 1.21435 1.03495 0.94436 0.95457 1.21849 0.96536 0.80463 0.96755 0.92714 1.86513 1.97003 1.19947 1.34039 1.22272 0.99608 0.96077 1.01006 1.21493 1.02926 0.94663 0.95720 1.17563 0.96411 0.88826 0.85468 1.91564 1.83633 1.78067 1.55937 0.77327 0.86534 1.17607 1.17372 0.83064 0.82721 0.92216 0.92247 0.90750 0.91277 0.90914 0.90800 0.77392 0.90947 0.91523 0.91744 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.18 12.88 -35.23 -0.45 -0.27 16 2 C -0.07 0.06 2.45 36.01 0.09 0.15 16 3 Si 0.69 -1.79 29.91 -169.99 -5.08 -6.87 16 4 C -0.16 0.10 5.26 -104.57 -0.55 -0.45 16 5 C -0.06 0.18 8.66 -39.57 -0.34 -0.17 16 6 C -0.15 0.30 10.02 -39.52 -0.40 -0.10 16 7 C 0.12 0.09 7.31 -39.31 -0.29 -0.20 16 8 F -0.12 -0.25 17.11 2.25 0.04 -0.21 16 9 C 0.03 0.06 5.74 -39.14 -0.22 -0.17 16 10 O -0.31 -0.90 9.32 -19.78 -0.18 -1.08 16 11 C 0.07 0.04 5.44 37.16 0.20 0.25 16 12 C -0.09 -0.01 2.43 -90.62 -0.22 -0.23 16 13 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 14 C -0.11 0.10 5.20 -26.73 -0.14 -0.04 16 15 C -0.11 -0.03 5.57 -26.73 -0.15 -0.18 16 16 C 0.10 0.05 3.47 -26.73 -0.09 -0.04 16 17 H 0.05 0.00 8.14 -51.93 -0.42 -0.43 16 18 O -0.57 -0.93 13.32 -35.23 -0.47 -1.40 16 19 C -0.15 -0.02 5.54 -26.75 -0.15 -0.16 16 20 C -0.11 -0.04 5.10 -26.75 -0.14 -0.18 16 21 C 0.14 0.24 7.25 -39.31 -0.29 -0.05 16 22 F -0.11 -0.41 16.60 2.25 0.04 -0.37 16 23 H 0.38 -1.84 8.70 45.56 0.40 -1.44 16 24 H 0.12 0.04 7.91 -51.93 -0.41 -0.37 16 25 H -0.25 0.07 7.11 56.52 0.40 0.47 16 26 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 27 H 0.15 -0.91 5.12 -52.49 -0.27 -1.18 16 28 H 0.16 -0.69 8.06 -52.49 -0.42 -1.11 16 29 H 0.06 0.00 8.14 -51.92 -0.42 -0.43 16 30 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 31 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 32 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 33 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 34 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 35 H 0.38 -0.83 9.08 45.56 0.41 -0.41 16 36 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 37 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 38 H 0.06 0.02 8.14 -51.93 -0.42 -0.41 16 39 H 0.07 0.12 7.82 -51.93 -0.41 -0.28 16 LS Contribution 329.04 15.07 4.96 4.96 Total: 0.00 -7.21 329.04 -8.38 -15.59 By element: Atomic # 1 Polarization: -4.24 SS G_CDS: -4.55 Total: -8.78 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.68 Total: -1.57 kcal Atomic # 8 Polarization: -1.64 SS G_CDS: -1.11 Total: -2.75 kcal Atomic # 9 Polarization: -0.65 SS G_CDS: 0.08 Total: -0.58 kcal Atomic # 14 Polarization: -1.79 SS G_CDS: -5.08 Total: -6.87 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -7.21 -8.38 -15.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_14032924_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.761 kcal (2) G-P(sol) polarization free energy of solvation -7.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds