Wall clock time and date at job start Tue Mar 9 2021 17:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46892 * 2 1 4 4 C 1.52998 * 109.47322 * 239.99859 * 2 1 3 5 5 Si 1.86306 * 109.47045 * 119.99788 * 2 1 3 6 6 C 1.86295 * 109.47129 * 299.99939 * 5 2 1 7 7 C 1.86302 * 109.46677 * 179.97438 * 5 2 1 8 8 O 1.63099 * 109.47026 * 60.00493 * 5 2 1 9 9 C 1.42897 * 113.99966 * 179.97438 * 8 5 2 10 10 C 1.53005 * 109.47202 * 179.97438 * 9 8 5 11 11 O 1.42899 * 109.47077 * 65.00101 * 10 9 8 12 12 C 1.42891 * 114.00395 * 180.02562 * 11 10 9 13 13 C 1.52994 * 109.47531 * 180.02562 * 12 11 10 14 14 O 1.42900 * 109.47313 * 64.99383 * 13 12 11 15 15 C 1.36004 * 117.00223 * 179.97438 * 14 13 12 16 16 C 1.38814 * 120.06830 * 90.00534 * 15 14 13 17 17 F 1.35097 * 120.03467 * 359.97438 * 16 15 14 18 18 C 1.38393 * 119.93405 * 180.02562 * 16 15 14 19 19 C 1.38229 * 120.06742 * 0.02562 * 18 16 15 20 20 C 1.38278 * 120.13976 * 0.02562 * 19 18 16 21 21 C 1.50699 * 119.96488 * 179.97438 * 20 19 18 22 22 O 1.42903 * 109.47294 * 255.00062 * 21 20 19 23 23 Si 1.86301 * 109.47146 * 15.00018 * 21 20 19 24 24 H 1.48506 * 109.47302 * 299.99754 * 23 21 20 25 25 H 1.48503 * 109.47334 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47376 * 59.99883 * 23 21 20 27 27 C 1.38342 * 120.06854 * 0.25422 * 20 19 18 28 28 F 1.35100 * 120.03602 * 179.70543 * 27 20 19 29 29 H 1.09002 * 109.46850 * 299.99596 * 1 2 3 30 30 H 1.08997 * 109.47071 * 59.99838 * 1 2 3 31 31 H 1.08997 * 109.46866 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46692 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47395 * 299.99963 * 3 2 1 34 34 H 1.08997 * 109.47277 * 60.00103 * 3 2 1 35 35 H 1.08999 * 109.47075 * 300.00558 * 4 2 1 36 36 H 1.09008 * 109.46643 * 59.99651 * 4 2 1 37 37 H 1.08990 * 109.47213 * 179.97438 * 4 2 1 38 38 H 1.09007 * 109.46898 * 179.97438 * 6 5 2 39 39 H 1.08994 * 109.47595 * 299.99906 * 6 5 2 40 40 H 1.09000 * 109.47048 * 60.00640 * 6 5 2 41 41 H 1.08997 * 109.47349 * 300.00133 * 7 5 2 42 42 H 1.08994 * 109.47145 * 60.00646 * 7 5 2 43 43 H 1.09006 * 109.46642 * 179.97438 * 7 5 2 44 44 H 1.09007 * 109.47192 * 59.99613 * 9 8 5 45 45 H 1.08998 * 109.47163 * 299.99801 * 9 8 5 46 46 H 1.08998 * 109.47273 * 305.00352 * 10 9 8 47 47 H 1.08998 * 109.47111 * 185.00181 * 10 9 8 48 48 H 1.09002 * 109.47261 * 59.99649 * 12 11 10 49 49 H 1.09004 * 109.47000 * 299.99708 * 12 11 10 50 50 H 1.09003 * 109.47044 * 305.00115 * 13 12 11 51 51 H 1.09001 * 109.47691 * 184.99961 * 13 12 11 52 52 H 1.08004 * 119.96625 * 179.97438 * 18 16 15 53 53 H 1.08007 * 119.93107 * 179.97438 * 19 18 16 54 54 H 1.09002 * 109.47485 * 134.99971 * 21 20 19 55 55 H 0.96698 * 113.99836 * 60.00254 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5301 0.0001 3.0423 7 6 4.0141 -0.8788 1.5207 8 8 1.6075 -2.4159 1.5212 9 6 2.0296 -3.1816 2.6514 10 6 1.4637 -4.5994 2.5472 11 8 2.0312 -5.2564 1.4122 12 6 1.5663 -6.5942 1.2223 13 6 2.2369 -7.1967 -0.0138 14 8 3.6424 -7.3139 0.2161 15 6 4.3916 -7.8360 -0.7918 16 6 4.9401 -7.0007 -1.7553 17 9 4.7299 -5.6676 -1.6934 18 6 5.7015 -7.5350 -2.7800 19 6 5.9158 -8.8991 -2.8449 20 6 5.3699 -9.7339 -1.8872 21 6 5.6055 -11.2205 -1.9621 22 8 4.4183 -11.8683 -2.4237 23 14 7.0027 -11.5691 -3.1440 24 1 6.6507 -11.0552 -4.4921 25 1 7.2353 -13.0340 -3.2174 26 1 8.2365 -10.8960 -2.6644 27 6 4.6030 -9.2065 -0.8637 28 9 4.0651 -10.0235 0.0682 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 1.8930 -0.5141 3.9323 39 1 1.8934 1.0277 3.0423 40 1 0.4401 0.0000 3.0423 41 1 4.3770 -1.3929 0.6308 42 1 4.3777 0.1487 1.5206 43 1 4.3774 -1.3923 2.4110 44 1 1.6654 -2.7117 3.5652 45 1 3.1184 -3.2254 2.6745 46 1 0.3806 -4.5510 2.4349 47 1 1.7108 -5.1566 3.4508 48 1 0.4854 -6.5868 1.0825 49 1 1.8153 -7.1931 2.0984 50 1 2.0622 -6.5497 -0.8736 51 1 1.8174 -8.1833 -0.2104 52 1 6.1282 -6.8856 -3.5301 53 1 6.5100 -9.3137 -3.6457 54 1 5.8639 -11.5978 -0.9727 55 1 4.1289 -11.5808 -3.3005 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_14032924_16896868.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:18:08 Heat of formation + Delta-G solvation = -270.486929 kcal Electronic energy + Delta-G solvation = -35740.016397 eV Core-core repulsion = 30730.418670 eV Total energy + Delta-G solvation = -5009.597727 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 392.184 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -50.17353 -50.13506 -40.92804 -39.62453 -38.90478 -37.55136 -37.24263 -36.83328 -32.62871 -32.08067 -30.88486 -29.63656 -29.17600 -29.07213 -27.84230 -27.39264 -26.84110 -24.54441 -23.72831 -23.47935 -22.92617 -20.42301 -19.69696 -19.11310 -18.95106 -18.17206 -17.93640 -17.83511 -17.56815 -16.84012 -16.58431 -16.45662 -16.38259 -16.09822 -15.99988 -15.89573 -15.81296 -15.67655 -15.20761 -15.11282 -14.94770 -14.84610 -14.72772 -14.28707 -14.19384 -13.96981 -13.65403 -13.51929 -13.38919 -13.24030 -13.19380 -13.07553 -12.96621 -12.92986 -12.88015 -12.56110 -12.43188 -12.36692 -12.21516 -12.11464 -11.80611 -11.74240 -11.69353 -11.51151 -11.29343 -11.16874 -10.61528 -10.50066 -10.30909 -10.05490 -10.00658 -9.93566 -0.44969 -0.32112 1.10883 1.46642 1.53798 1.58191 1.79174 1.86584 1.95602 2.13163 2.31310 2.48865 2.61663 2.65586 3.18447 3.31763 3.49593 3.62713 3.79340 3.86742 4.02062 4.09231 4.11312 4.11764 4.11940 4.20216 4.26992 4.39793 4.43266 4.47672 4.50048 4.55335 4.58313 4.62970 4.68923 4.69778 4.72524 4.73845 4.77615 4.78677 4.80976 4.82072 4.82790 4.86660 4.98920 5.08166 5.08572 5.19455 5.32660 5.33714 5.39794 5.43367 5.51891 5.57972 5.63057 6.10839 6.25859 6.67957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.381 4.381 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.308 2.692 6 C -0.512 4.512 7 C -0.519 4.519 8 O -0.636 6.636 9 C 0.076 3.924 10 C 0.052 3.948 11 O -0.398 6.398 12 C 0.063 3.937 13 C 0.062 3.938 14 O -0.332 6.332 15 C 0.012 3.988 16 C 0.099 3.901 17 F -0.131 7.131 18 C -0.131 4.131 19 C -0.066 4.066 20 C -0.150 4.150 21 C -0.091 4.091 22 O -0.551 6.551 23 Si 0.995 3.005 24 H -0.224 1.224 25 H -0.274 1.274 26 H -0.249 1.249 27 C 0.119 3.881 28 F -0.128 7.128 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.094 0.906 49 H 0.065 0.935 50 H 0.061 0.939 51 H 0.085 0.915 52 H 0.181 0.819 53 H 0.177 0.823 54 H 0.114 0.886 55 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 -0.582 -1.953 2.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.423 4.423 3 C -0.197 4.197 4 C -0.192 4.192 5 Si 1.438 2.562 6 C -0.614 4.614 7 C -0.620 4.620 8 O -0.596 6.596 9 C 0.001 3.999 10 C -0.024 4.024 11 O -0.318 6.318 12 C -0.014 4.014 13 C -0.012 4.012 14 O -0.249 6.249 15 C -0.034 4.034 16 C 0.079 3.921 17 F -0.110 7.110 18 C -0.150 4.150 19 C -0.084 4.084 20 C -0.152 4.152 21 C -0.199 4.199 22 O -0.358 6.358 23 Si 0.815 3.185 24 H -0.147 1.147 25 H -0.199 1.199 26 H -0.173 1.173 27 C 0.099 3.901 28 F -0.106 7.106 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.113 0.887 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.096 0.904 48 H 0.112 0.888 49 H 0.083 0.917 50 H 0.080 0.920 51 H 0.103 0.897 52 H 0.198 0.802 53 H 0.194 0.806 54 H 0.132 0.868 55 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 1.224 -1.051 -1.998 2.568 hybrid contribution -0.744 0.823 0.402 1.180 sum 0.480 -0.228 -1.596 1.682 Atomic orbital electron populations 1.21522 0.94010 1.01666 1.01992 1.25876 1.00579 1.03028 1.12862 1.21595 1.01147 0.94550 1.02380 1.21505 1.00729 0.99805 0.97135 0.76348 0.62138 0.53020 0.64652 1.27011 1.07017 1.09771 1.17623 1.27146 1.26102 1.04691 1.04048 1.85383 1.79222 1.46584 1.48389 1.22290 0.99215 0.90625 0.87782 1.22856 0.98477 0.92201 0.88831 1.88001 1.68537 1.26558 1.48724 1.22614 0.98287 0.83535 0.96928 1.23084 0.78301 1.00771 0.99063 1.86179 1.20114 1.82228 1.36388 1.18866 1.01337 0.90214 0.92962 1.18120 1.00415 0.77616 0.95905 1.91548 1.93227 1.30194 1.96001 1.21484 0.98748 0.96721 0.98037 1.21242 0.97377 0.92004 0.97739 1.20645 1.00189 0.98873 0.95474 1.25274 0.98075 0.87265 1.09329 1.86553 1.43600 1.65530 1.40142 0.85077 0.75230 0.80018 0.78207 1.14669 1.19937 1.17293 1.17742 0.97517 0.85867 0.89010 1.91513 1.83936 1.71688 1.63490 0.91778 0.93233 0.92774 0.92074 0.92989 0.91522 0.93099 0.93103 0.92608 0.90815 0.90247 0.90786 0.92027 0.90307 0.91379 0.88663 0.92106 0.91470 0.90365 0.88848 0.91660 0.92024 0.89674 0.80201 0.80583 0.86835 0.75814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.26 7.85 71.98 0.56 0.30 16 2 C -0.38 -0.70 0.53 -10.79 -0.01 -0.70 16 3 C -0.14 -0.04 7.85 71.98 0.56 0.53 16 4 C -0.13 -0.53 7.85 71.98 0.56 0.03 16 5 Si 1.31 0.48 8.45 68.60 0.58 1.06 16 6 C -0.51 0.66 8.50 113.37 0.96 1.63 16 7 C -0.52 -1.14 8.50 113.37 0.96 -0.18 16 8 O -0.64 -2.65 8.52 -144.35 -1.23 -3.88 16 9 C 0.08 0.08 5.50 71.98 0.40 0.48 16 10 C 0.05 0.08 6.32 71.98 0.45 0.53 16 11 O -0.40 -3.06 10.27 -135.05 -1.39 -4.44 16 12 C 0.06 0.18 6.32 71.98 0.45 0.63 16 13 C 0.06 0.30 6.44 71.98 0.46 0.77 16 14 O -0.33 -3.43 9.75 -88.96 -0.87 -4.30 16 15 C 0.01 0.09 5.74 22.56 0.13 0.22 16 16 C 0.10 0.49 7.31 22.44 0.16 0.65 16 17 F -0.13 -1.18 17.11 44.97 0.77 -0.42 16 18 C -0.13 0.32 10.02 22.30 0.22 0.55 16 19 C -0.07 0.30 8.65 22.28 0.19 0.49 16 20 C -0.15 0.03 5.26 -19.83 -0.10 -0.08 16 21 C -0.09 0.17 2.45 71.24 0.17 0.35 16 22 O -0.55 0.20 12.88 -148.98 -1.92 -1.72 16 23 Si 0.99 -5.46 25.49 68.60 1.75 -3.71 16 24 H -0.22 2.05 6.73 99.48 0.67 2.71 16 25 H -0.27 0.25 7.11 99.48 0.71 0.96 16 26 H -0.25 1.14 7.11 99.48 0.71 1.85 16 27 C 0.12 0.66 7.25 22.44 0.16 0.82 16 28 F -0.13 -1.14 16.60 44.97 0.75 -0.40 16 29 H 0.06 -0.01 7.79 -2.39 -0.02 -0.03 16 30 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.05 0.16 7.96 -2.39 -0.02 0.14 16 32 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 33 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.07 -0.12 7.79 -2.39 -0.02 -0.14 16 35 H 0.05 0.30 7.97 -2.39 -0.02 0.28 16 36 H 0.05 0.19 8.14 -2.38 -0.02 0.17 16 37 H 0.05 0.19 7.79 -2.39 -0.02 0.17 16 38 H 0.07 -0.19 7.48 -2.38 -0.02 -0.21 16 39 H 0.08 -0.16 7.79 -2.39 -0.02 -0.18 16 40 H 0.07 -0.09 7.79 -2.39 -0.02 -0.11 16 41 H 0.06 0.29 7.79 -2.39 -0.02 0.27 16 42 H 0.08 0.05 7.79 -2.39 -0.02 0.03 16 43 H 0.07 0.11 7.48 -2.38 -0.02 0.09 16 44 H 0.10 -0.45 7.21 -2.38 -0.02 -0.47 16 45 H 0.06 0.08 7.21 -2.39 -0.02 0.06 16 46 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 47 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 48 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 49 H 0.07 0.10 8.14 -2.38 -0.02 0.08 16 50 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 51 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 52 H 0.18 -1.48 8.06 -2.91 -0.02 -1.50 16 53 H 0.18 -1.88 4.88 -2.91 -0.01 -1.89 16 54 H 0.11 -0.09 7.91 -2.39 -0.02 -0.11 16 55 H 0.39 -3.36 8.70 -74.06 -0.64 -4.00 16 Total: 0.00 -18.29 452.82 5.72 -12.57 By element: Atomic # 1 Polarization: -2.74 SS G_CDS: 0.95 Total: -1.79 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 6.33 Total: 7.02 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -5.40 Total: -14.34 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 1.52 Total: -0.81 kcal Atomic # 14 Polarization: -4.97 SS G_CDS: 2.33 Total: -2.65 kcal Total: -18.29 5.72 -12.57 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_14032924_16896868.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -257.920 kcal (2) G-P(sol) polarization free energy of solvation -18.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -276.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds