Wall clock time and date at job start Tue Mar 9 2021 17:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38708 * 120.03360 * 2 1 4 4 O 1.35906 * 120.04975 * 359.97438 * 3 2 1 5 5 C 1.42905 * 116.99498 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46848 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.47398 * 54.99843 * 6 5 4 8 8 C 1.53002 * 109.47233 * 175.00017 * 6 5 4 9 9 C 1.52997 * 109.47415 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46978 * 300.00098 * 9 8 6 11 11 H 1.09002 * 109.46838 * 299.99316 * 10 9 8 12 12 O 1.42903 * 109.46797 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.47128 * 59.99726 * 10 9 8 14 14 C 1.52992 * 109.47106 * 300.00123 * 13 10 9 15 15 C 1.38745 * 119.89290 * 180.25191 * 3 2 1 16 16 C 1.38130 * 119.94242 * 359.47267 * 15 3 2 17 17 C 1.38289 * 120.05422 * 0.50598 * 16 15 3 18 18 C 1.50701 * 119.94449 * 179.74583 * 17 16 15 19 19 O 1.42905 * 109.46997 * 120.02233 * 18 17 16 20 20 Si 1.86299 * 109.47150 * 0.02562 * 18 17 16 21 21 C 1.38170 * 120.02503 * 179.97438 * 2 1 3 22 22 H 1.09000 * 109.47038 * 89.99911 * 1 2 3 23 23 H 1.08997 * 109.47560 * 210.00525 * 1 2 3 24 24 H 1.09005 * 109.46727 * 329.99984 * 1 2 3 25 25 H 1.08990 * 109.47416 * 60.00183 * 5 4 3 26 26 H 1.09001 * 109.47100 * 299.99864 * 5 4 3 27 27 H 1.09000 * 109.46986 * 299.99797 * 8 6 5 28 28 H 1.09002 * 109.47075 * 59.99068 * 8 6 5 29 29 H 1.09002 * 109.47045 * 59.99931 * 9 8 6 30 30 H 1.08998 * 109.47171 * 179.97438 * 9 8 6 31 31 H 0.96698 * 113.99903 * 180.02562 * 12 10 9 32 32 H 1.09002 * 109.47070 * 60.00059 * 13 10 9 33 33 H 1.08996 * 109.46550 * 179.97438 * 13 10 9 34 34 H 1.09002 * 109.47103 * 299.99915 * 14 13 10 35 35 H 1.08998 * 109.46862 * 180.02562 * 14 13 10 36 36 H 1.08004 * 120.03295 * 179.70247 * 15 3 2 37 37 H 1.07996 * 119.97331 * 180.24987 * 16 15 3 38 38 H 1.09000 * 109.46980 * 240.02145 * 18 17 16 39 39 H 0.96703 * 113.99345 * 300.00131 * 19 18 17 40 40 H 1.48497 * 110.00298 * 58.67677 * 20 18 17 41 41 H 1.48495 * 110.00317 * 180.02562 * 20 18 17 42 42 H 1.07994 * 119.97165 * 0.04688 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2012 1.2008 0.0000 4 8 1.5234 2.3788 -0.0005 5 6 2.3036 3.5761 -0.0011 6 6 1.3734 4.7909 -0.0010 7 1 0.6848 4.7212 0.8411 8 6 2.2043 6.0695 0.1242 9 6 1.2742 7.2843 0.1237 10 6 0.4801 7.3180 -1.1837 11 1 1.1690 7.3876 -2.0255 12 8 -0.3891 8.4523 -1.1839 13 6 -0.3508 6.0394 -1.3089 14 6 0.5793 4.8247 -1.3083 15 6 3.5887 1.1974 -0.0053 16 6 4.2752 -0.0012 0.0005 17 6 3.5808 -1.1971 0.0009 18 6 4.3323 -2.5033 0.0014 19 8 3.9856 -3.2519 1.1683 20 14 6.1645 -2.1656 0.0021 21 6 2.1984 -1.1963 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 2.9324 3.5997 -0.8910 26 1 2.9324 3.6004 0.8889 27 1 2.7703 6.0453 1.0554 28 1 2.8930 6.1392 -0.7178 29 1 0.5853 7.2148 0.9655 30 1 1.8661 8.1952 0.2133 31 1 -0.9249 8.5371 -1.9844 32 1 -1.0397 5.9699 -0.4670 33 1 -0.9168 6.0637 -2.2400 34 1 1.2682 4.8942 -2.1502 35 1 -0.0126 3.9138 -1.3979 36 1 4.1315 2.1311 -0.0102 37 1 5.3552 -0.0044 0.0004 38 1 4.0684 -3.0746 -0.8885 39 1 4.1928 -2.8031 1.9994 40 1 6.5321 -1.3600 1.1941 41 1 6.9169 -3.4458 0.0020 42 1 1.6583 -2.1315 0.0002 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_14925284_16737256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:26:08 Heat of formation + Delta-G solvation = -111.794554 kcal Electronic energy + Delta-G solvation = -21931.621594 eV Core-core repulsion = 18649.551247 eV Total energy + Delta-G solvation = -3282.070347 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.46212 -40.16875 -39.04856 -37.47804 -36.59284 -33.98748 -32.11026 -31.81400 -31.29581 -28.05230 -27.06532 -25.97641 -23.77180 -23.43216 -21.93360 -21.78383 -20.83662 -19.06411 -18.34196 -18.18904 -17.24071 -17.06092 -16.37409 -16.20185 -16.14992 -15.52862 -15.46187 -15.19411 -14.84120 -14.59561 -14.38096 -14.13689 -14.05712 -13.71263 -13.56282 -13.22442 -13.14411 -12.99091 -12.87250 -12.49303 -12.28536 -12.13554 -12.08308 -11.89109 -11.71021 -11.54407 -11.47827 -11.08361 -10.71439 -10.59606 -9.83387 -9.09381 -4.93100 0.28183 0.31981 1.32046 1.59392 1.95210 2.16665 2.62900 3.23401 3.41951 3.64933 3.68839 3.70434 3.76534 3.79893 3.91879 4.09003 4.15779 4.21135 4.25381 4.32175 4.37409 4.38607 4.48891 4.52830 4.54228 4.57571 4.67385 4.71986 4.77640 4.82705 4.89347 4.98752 5.06691 5.09532 5.15365 5.18613 5.20757 5.27523 5.33816 5.35836 5.44349 5.50442 5.78403 6.42140 6.48476 6.85494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.132 4.132 3 C 0.123 3.877 4 O -0.320 6.320 5 C 0.059 3.941 6 C -0.083 4.083 7 H 0.072 0.928 8 C -0.103 4.103 9 C -0.114 4.114 10 C 0.101 3.899 11 H 0.064 0.936 12 O -0.591 6.591 13 C -0.147 4.147 14 C -0.107 4.107 15 C -0.204 4.204 16 C -0.085 4.085 17 C -0.156 4.156 18 C -0.079 4.079 19 O -0.550 6.550 20 Si 0.766 3.234 21 C -0.066 4.066 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.393 0.607 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.122 0.878 39 H 0.385 0.615 40 H -0.283 1.283 41 H -0.305 1.305 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 2.500 -3.000 4.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.133 4.133 3 C 0.078 3.922 4 O -0.234 6.234 5 C -0.016 4.016 6 C -0.101 4.101 7 H 0.090 0.910 8 C -0.140 4.140 9 C -0.152 4.152 10 C 0.042 3.958 11 H 0.082 0.918 12 O -0.400 6.400 13 C -0.185 4.185 14 C -0.145 4.145 15 C -0.222 4.222 16 C -0.102 4.102 17 C -0.157 4.157 18 C -0.187 4.187 19 O -0.358 6.358 20 Si 0.672 3.328 21 C -0.084 4.084 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.243 0.757 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.169 0.831 37 H 0.164 0.836 38 H 0.140 0.860 39 H 0.234 0.766 40 H -0.209 1.209 41 H -0.233 1.233 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.496 2.124 -2.447 4.090 hybrid contribution -0.762 -0.281 0.690 1.066 sum 1.734 1.844 -1.756 3.081 Atomic orbital electron populations 1.20601 0.89944 1.02836 1.02617 1.19523 0.97246 0.90610 1.05922 1.19005 0.90925 0.85772 0.96535 1.86047 1.36530 1.12560 1.88287 1.23054 0.94160 0.81723 1.02632 1.21169 0.97209 0.92546 0.99218 0.90987 1.21431 0.97319 0.91434 1.03865 1.21468 0.98191 0.98822 0.96672 1.21926 0.91015 0.84464 0.98370 0.91782 1.86481 1.58779 1.47867 1.46869 1.22220 0.98669 0.95037 1.02585 1.21465 0.98297 0.97586 0.97114 1.21428 0.92601 1.00212 1.07962 1.20995 1.00136 0.91311 0.97756 1.20218 0.94375 0.95318 1.05776 1.25177 1.10635 0.92039 0.90878 1.86562 1.85351 1.47226 1.16667 0.94135 0.72025 0.79031 0.87623 1.20840 0.93620 0.97011 0.96974 0.90958 0.91045 0.91733 0.90451 0.90944 0.89976 0.90061 0.92233 0.91158 0.75748 0.92301 0.90800 0.90940 0.91806 0.83132 0.83604 0.86013 0.76602 1.20907 1.23313 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.19 9.79 71.24 0.70 0.51 16 2 C -0.13 -0.50 5.89 -19.77 -0.12 -0.62 16 3 C 0.12 0.38 6.66 22.50 0.15 0.53 16 4 O -0.32 -0.74 8.72 -92.49 -0.81 -1.55 16 5 C 0.06 -0.19 4.12 71.98 0.30 0.11 16 6 C -0.08 0.27 2.43 -10.79 -0.03 0.24 16 7 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 8 C -0.10 0.52 5.20 30.59 0.16 0.68 16 9 C -0.11 0.13 5.57 30.59 0.17 0.30 16 10 C 0.10 -0.11 3.47 30.60 0.11 0.00 16 11 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 12 O -0.59 -1.17 13.32 -148.98 -1.98 -3.16 16 13 C -0.15 0.29 5.54 30.59 0.17 0.46 16 14 C -0.11 0.28 5.10 30.59 0.16 0.44 16 15 C -0.20 0.03 9.04 22.37 0.20 0.23 16 16 C -0.08 0.06 8.66 22.26 0.19 0.25 16 17 C -0.16 -0.18 5.39 -19.85 -0.11 -0.29 16 18 C -0.08 -0.01 2.82 71.24 0.20 0.19 16 19 O -0.55 -1.89 12.77 -148.98 -1.90 -3.79 16 20 Si 0.77 -1.32 29.78 68.60 2.04 0.72 16 21 C -0.07 -0.20 9.26 22.25 0.21 0.01 16 22 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 23 H 0.07 0.02 8.09 -2.39 -0.02 0.00 16 24 H 0.06 0.19 7.53 -2.38 -0.02 0.17 16 25 H 0.08 -0.44 7.65 -2.39 -0.02 -0.46 16 26 H 0.07 -0.36 7.67 -2.39 -0.02 -0.38 16 27 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 28 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.39 -2.27 9.08 -74.06 -0.67 -2.94 16 32 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 35 H 0.06 -0.01 7.82 -2.39 -0.02 -0.03 16 36 H 0.15 -0.73 6.30 -2.91 -0.02 -0.75 16 37 H 0.15 -0.74 4.87 -2.91 -0.01 -0.76 16 38 H 0.12 -0.15 7.96 -2.39 -0.02 -0.17 16 39 H 0.38 -0.74 8.70 -74.06 -0.64 -1.39 16 40 H -0.28 -0.52 7.11 99.48 0.71 0.19 16 41 H -0.30 -1.89 7.11 99.48 0.71 -1.18 16 42 H 0.13 0.28 8.06 -2.91 -0.02 0.26 16 Total: 0.00 -13.63 332.91 -0.46 -14.09 By element: Atomic # 1 Polarization: -9.09 SS G_CDS: -0.26 Total: -9.35 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 2.46 Total: 3.04 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -4.69 Total: -8.49 kcal Atomic # 14 Polarization: -1.32 SS G_CDS: 2.04 Total: 0.72 kcal Total: -13.63 -0.46 -14.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_14925284_16737256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.706 kcal (2) G-P(sol) polarization free energy of solvation -13.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds