Wall clock time and date at job start Tue Mar 9 2021 17:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47251 * 2 1 4 4 N 1.46504 * 109.47242 * 120.00314 * 2 1 3 5 5 C 1.46496 * 119.99863 * 304.66453 * 4 2 1 6 6 C 1.39669 * 119.99767 * 124.66499 * 4 2 1 7 7 C 1.38797 * 120.03965 * 174.46709 * 6 4 2 8 8 C 1.38614 * 119.86375 * 180.23138 * 7 6 4 9 9 O 1.35903 * 120.01580 * 179.74997 * 8 7 6 10 10 C 1.42901 * 116.99617 * 359.72488 * 9 8 7 11 11 C 1.53004 * 109.46701 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47039 * 55.00552 * 11 10 9 13 13 C 1.53009 * 109.46879 * 174.99869 * 11 10 9 14 14 C 1.53004 * 109.46879 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46848 * 300.00234 * 14 13 11 16 16 H 1.09000 * 109.47142 * 299.99507 * 15 14 13 17 17 O 1.42904 * 109.46587 * 180.02562 * 15 14 13 18 18 C 1.52996 * 109.47374 * 60.00262 * 15 14 13 19 19 C 1.52999 * 109.47172 * 299.99472 * 18 15 14 20 20 C 1.38773 * 119.96785 * 359.47667 * 8 7 6 21 21 C 1.50703 * 119.95380 * 180.27591 * 20 8 7 22 22 O 1.42901 * 109.47151 * 74.99956 * 21 20 8 23 23 Si 1.86299 * 109.47095 * 194.99838 * 21 20 8 24 24 C 1.38215 * 120.09228 * 0.29675 * 20 8 7 25 25 C 1.38114 * 120.12790 * 359.95253 * 24 20 8 26 26 H 1.09005 * 109.46928 * 299.99584 * 1 2 3 27 27 H 1.08995 * 109.47288 * 60.00213 * 1 2 3 28 28 H 1.09003 * 109.47071 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46928 * 240.00416 * 2 1 3 30 30 H 1.08998 * 109.46945 * 59.99998 * 3 2 1 31 31 H 1.09001 * 109.47359 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47239 * 300.00267 * 3 2 1 33 33 H 1.09008 * 109.46989 * 269.99827 * 5 4 2 34 34 H 1.08997 * 109.47012 * 29.99831 * 5 4 2 35 35 H 1.08994 * 109.47195 * 150.00411 * 5 4 2 36 36 H 1.07994 * 120.06841 * 0.02562 * 7 6 4 37 37 H 1.08993 * 109.47259 * 60.00359 * 10 9 8 38 38 H 1.08998 * 109.47370 * 299.99993 * 10 9 8 39 39 H 1.09000 * 109.46728 * 60.00492 * 13 11 10 40 40 H 1.08994 * 109.47081 * 299.99903 * 13 11 10 41 41 H 1.09000 * 109.46847 * 59.99921 * 14 13 11 42 42 H 1.08992 * 109.46736 * 180.02562 * 14 13 11 43 43 H 0.96700 * 114.00110 * 179.97438 * 17 15 14 44 44 H 1.09000 * 109.47148 * 59.99806 * 18 15 14 45 45 H 1.09003 * 109.46977 * 179.97438 * 18 15 14 46 46 H 1.09000 * 109.47288 * 179.97438 * 19 18 15 47 47 H 1.09000 * 109.47357 * 300.00206 * 19 18 15 48 48 H 1.09000 * 109.46907 * 315.00078 * 21 20 8 49 49 H 0.96692 * 114.00282 * 59.99978 * 22 21 20 50 50 H 1.48497 * 110.00017 * 58.67914 * 23 21 20 51 51 H 1.48497 * 110.00179 * 179.97438 * 23 21 20 52 52 H 1.08000 * 119.93132 * 179.97438 * 24 20 8 53 53 H 1.07997 * 119.98148 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.5822 -0.2526 2.5243 6 6 2.8998 -1.7668 1.0702 7 6 3.4527 -2.3483 2.2027 8 6 4.3308 -3.4130 2.0732 9 8 4.8780 -3.9814 3.1798 10 6 4.5085 -3.4269 4.4440 11 6 5.2190 -4.1909 5.5631 12 1 6.2939 -4.1832 5.3827 13 6 4.9226 -3.5205 6.9062 14 6 5.6336 -4.2841 8.0253 15 6 5.1322 -5.7293 8.0549 16 1 4.0573 -5.7373 8.2356 17 8 5.7959 -6.4423 9.1005 18 6 5.4286 -6.3996 6.7119 19 6 4.7176 -5.6361 5.5928 20 6 4.6465 -3.9019 0.8134 21 6 5.5964 -5.0634 0.6734 22 8 4.9299 -6.2714 1.0459 23 14 6.1669 -5.1893 -1.0957 24 6 4.0913 -3.3247 -0.3131 25 6 3.2199 -2.2603 -0.1888 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 2.2710 0.5032 2.9020 34 1 0.5801 0.1706 2.4563 35 1 1.5712 -1.1055 3.2028 36 1 3.2020 -1.9698 3.1826 37 1 3.4296 -3.5093 4.5755 38 1 4.7998 -2.3772 4.4794 39 1 3.8476 -3.5282 7.0866 40 1 5.2802 -2.4911 6.8852 41 1 6.7085 -4.2761 7.8445 42 1 5.4221 -3.8068 8.9820 43 1 5.5262 -7.3677 9.1782 44 1 6.5035 -6.3916 6.5312 45 1 5.0718 -7.4294 6.7332 46 1 4.9291 -6.1134 4.6360 47 1 3.6427 -5.6441 5.7735 48 1 6.4579 -4.9086 1.3229 49 1 4.1516 -6.4729 0.5088 50 1 6.8335 -3.9271 -1.5053 51 1 7.1047 -6.3306 -1.2469 52 1 4.3391 -3.7070 -1.2923 53 1 2.7878 -1.8109 -1.0707 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_15096556_16737256.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:48:23 Heat of formation + Delta-G solvation = -94.563683 kcal Electronic energy + Delta-G solvation = -30559.895683 eV Core-core repulsion = 26590.996136 eV Total energy + Delta-G solvation = -3968.899547 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.213 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.54462 -40.28477 -39.38966 -38.26022 -36.99082 -36.57467 -33.79367 -32.16485 -31.85884 -31.09136 -30.67904 -28.16386 -27.90394 -26.74827 -25.32266 -23.86068 -23.43796 -22.87623 -21.80158 -20.97863 -20.67624 -19.35334 -18.24237 -17.99540 -17.35345 -17.20430 -17.03951 -16.40530 -16.35001 -15.96336 -15.60636 -15.52413 -15.43927 -15.15852 -14.83331 -14.76319 -14.70890 -14.45364 -14.09944 -13.91314 -13.84704 -13.53547 -13.34839 -13.28741 -13.23008 -13.17213 -12.84689 -12.61627 -12.58367 -12.25958 -12.21351 -12.18804 -12.14400 -11.96564 -11.86811 -11.60796 -11.58144 -11.45569 -11.12918 -10.75150 -10.58908 -10.26793 -9.36039 -8.22624 -4.99671 0.45162 0.57471 1.38490 1.67300 1.99949 2.07455 2.23818 2.79617 3.19625 3.60260 3.66402 3.69585 3.71951 3.76432 3.88960 4.00394 4.03593 4.10727 4.12956 4.15060 4.17669 4.25179 4.29826 4.33095 4.37296 4.43529 4.44586 4.48361 4.50476 4.57335 4.61085 4.63517 4.71133 4.73822 4.79158 4.82113 4.86225 4.94510 4.94836 4.98221 5.02033 5.05026 5.11032 5.14621 5.21184 5.24988 5.30624 5.33384 5.37189 5.39862 5.50971 5.74386 6.28789 6.39280 6.59184 6.82491 6.90070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.134 3.866 3 C -0.160 4.160 4 N -0.624 5.624 5 C 0.086 3.914 6 C 0.252 3.748 7 C -0.298 4.298 8 C 0.184 3.816 9 O -0.318 6.318 10 C 0.064 3.936 11 C -0.082 4.082 12 H 0.068 0.932 13 C -0.101 4.101 14 C -0.113 4.113 15 C 0.103 3.897 16 H 0.065 0.935 17 O -0.590 6.590 18 C -0.146 4.146 19 C -0.104 4.104 20 C -0.230 4.230 21 C -0.054 4.054 22 O -0.558 6.558 23 Si 0.780 3.220 24 C -0.028 4.028 25 C -0.238 4.238 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.136 0.864 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.393 0.607 44 H 0.056 0.944 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.389 0.611 50 H -0.288 1.288 51 H -0.303 1.303 52 H 0.156 0.844 53 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.768 3.181 -2.439 7.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 C -0.219 4.219 4 N -0.333 5.333 5 C -0.057 4.057 6 C 0.148 3.852 7 C -0.321 4.321 8 C 0.137 3.863 9 O -0.231 6.231 10 C -0.011 4.011 11 C -0.101 4.101 12 H 0.086 0.914 13 C -0.139 4.139 14 C -0.150 4.150 15 C 0.044 3.956 16 H 0.083 0.917 17 O -0.399 6.399 18 C -0.184 4.184 19 C -0.142 4.142 20 C -0.232 4.232 21 C -0.163 4.163 22 O -0.365 6.365 23 Si 0.686 3.314 24 C -0.046 4.046 25 C -0.260 4.260 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.153 0.847 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.243 0.757 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.238 0.762 50 H -0.215 1.215 51 H -0.231 1.231 52 H 0.173 0.827 53 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.350 3.776 -2.387 6.969 hybrid contribution 0.079 -0.173 0.859 0.880 sum -5.271 3.603 -1.528 6.565 Atomic orbital electron populations 1.22151 0.94215 1.02322 1.03155 1.21238 0.94651 0.93009 0.87941 1.22160 1.00923 0.95830 1.02962 1.46798 1.47797 1.32025 1.06719 1.21713 1.00509 1.00043 0.83433 1.17742 0.87730 0.86330 0.93380 1.20777 1.08216 1.03919 0.99182 1.18680 0.90642 0.90404 0.86576 1.86121 1.66358 1.57017 1.13645 1.22946 0.99936 0.97482 0.80704 1.21167 1.00333 0.95356 0.93243 0.91372 1.21424 1.01721 0.99291 0.91461 1.21462 1.00550 0.93661 0.99375 1.21899 0.95866 0.92078 0.85747 0.91673 1.86476 1.69311 1.29020 1.55045 1.22215 1.00972 1.00018 0.95224 1.21422 1.00206 0.94349 0.98229 1.19503 1.08467 1.04164 0.91115 1.24884 0.96217 0.83536 1.11710 1.86467 1.47032 1.39810 1.63177 0.94109 0.84246 0.76561 0.76469 1.20743 0.93202 0.93633 0.96986 1.20812 1.06635 1.02297 0.96225 0.92076 0.90235 0.92724 0.88393 0.92434 0.93462 0.90310 0.93332 0.89968 0.91455 0.84667 0.91133 0.91499 0.90074 0.90017 0.92283 0.90853 0.75719 0.92519 0.90802 0.92289 0.91064 0.89962 0.76167 1.21456 1.23098 0.82708 0.83749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.85 9.08 71.98 0.65 1.50 16 2 C 0.13 -0.48 3.20 44.99 0.14 -0.34 16 3 C -0.16 0.63 9.26 71.98 0.67 1.30 16 4 N -0.62 0.46 2.90 -698.14 -2.02 -1.56 16 5 C 0.09 -0.29 9.30 127.77 1.19 0.90 16 6 C 0.25 0.65 6.53 38.20 0.25 0.90 16 7 C -0.30 -1.19 8.15 22.49 0.18 -1.00 16 8 C 0.18 1.24 6.66 22.49 0.15 1.39 16 9 O -0.32 -2.41 9.00 -92.46 -0.83 -3.24 16 10 C 0.06 0.10 4.12 71.98 0.30 0.39 16 11 C -0.08 -0.08 2.43 -10.79 -0.03 -0.11 16 12 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 13 C -0.10 0.21 5.20 30.60 0.16 0.37 16 14 C -0.11 -0.13 5.57 30.60 0.17 0.04 16 15 C 0.10 0.13 3.47 30.59 0.11 0.24 16 16 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 17 O -0.59 -2.26 13.32 -148.98 -1.98 -4.24 16 18 C -0.15 -0.22 5.55 30.59 0.17 -0.05 16 19 C -0.10 -0.19 5.10 30.59 0.16 -0.04 16 20 C -0.23 -1.14 5.28 -19.74 -0.10 -1.25 16 21 C -0.05 -0.29 2.37 71.24 0.17 -0.12 16 22 O -0.56 -3.18 12.88 -148.98 -1.92 -5.10 16 23 Si 0.78 1.03 29.91 68.60 2.05 3.08 16 24 C -0.03 -0.02 8.65 22.23 0.19 0.17 16 25 C -0.24 -0.21 9.31 22.42 0.21 0.00 16 26 H 0.06 -0.33 6.53 -2.38 -0.02 -0.34 16 27 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 28 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.10 -0.44 5.31 -2.38 -0.01 -0.45 16 30 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 31 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H 0.05 -0.16 8.14 -2.38 -0.02 -0.18 16 34 H 0.08 -0.47 6.19 -2.39 -0.01 -0.48 16 35 H 0.07 -0.24 6.44 -2.39 -0.02 -0.26 16 36 H 0.14 0.18 4.54 -2.91 -0.01 0.16 16 37 H 0.07 -0.03 7.65 -2.39 -0.02 -0.05 16 38 H 0.07 0.00 7.67 -2.39 -0.02 -0.02 16 39 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 40 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 41 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.39 -1.56 9.08 -74.06 -0.67 -2.23 16 44 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.06 0.37 7.82 -2.39 -0.02 0.35 16 47 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 48 H 0.08 0.79 7.82 -2.39 -0.02 0.77 16 49 H 0.39 -1.13 8.70 -74.06 -0.64 -1.78 16 50 H -0.29 -1.75 7.11 99.48 0.71 -1.04 16 51 H -0.30 -2.64 7.11 99.48 0.71 -1.93 16 52 H 0.16 -0.80 5.12 -2.91 -0.01 -0.81 16 53 H 0.15 -0.46 5.74 -2.91 -0.02 -0.48 16 Total: 0.00 -16.82 401.82 -0.34 -17.17 By element: Atomic # 1 Polarization: -10.03 SS G_CDS: -0.37 Total: -10.40 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 4.73 Total: 4.29 kcal Atomic # 7 Polarization: 0.46 SS G_CDS: -2.02 Total: -1.56 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -4.73 Total: -12.58 kcal Atomic # 14 Polarization: 1.03 SS G_CDS: 2.05 Total: 3.08 kcal Total: -16.82 -0.34 -17.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_15096556_16737256.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.397 kcal (2) G-P(sol) polarization free energy of solvation -16.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds