Wall clock time and date at job start Tue Mar 9 2021 17:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86302 * 109.46827 * 2 1 4 4 C 1.50701 * 109.46847 * 119.99632 * 2 1 3 5 5 C 1.38119 * 120.02693 * 254.97758 * 4 2 1 6 6 C 1.38295 * 120.05041 * 180.02562 * 5 4 2 7 7 C 1.38238 * 120.11412 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.97502 * 180.02562 * 7 6 5 9 9 F 1.39901 * 109.46903 * 359.97438 * 8 7 6 10 10 F 1.39905 * 109.47182 * 119.99760 * 8 7 6 11 11 F 1.39896 * 109.47124 * 239.99763 * 8 7 6 12 12 C 1.38172 * 120.05616 * 359.76715 * 7 6 5 13 13 C 1.38711 * 119.94138 * 0.48681 * 12 7 6 14 14 O 1.35893 * 120.05609 * 179.76648 * 13 12 7 15 15 C 1.42904 * 117.00281 * 359.72888 * 14 13 12 16 16 C 1.52997 * 109.47396 * 180.02562 * 15 14 13 17 17 H 1.09002 * 109.47153 * 304.99576 * 16 15 14 18 18 C 1.53000 * 109.47060 * 64.99895 * 16 15 14 19 19 C 1.53001 * 109.46886 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.46963 * 299.99499 * 19 18 16 21 21 H 1.09002 * 109.47067 * 300.00341 * 20 19 18 22 22 O 1.42900 * 109.47442 * 180.02562 * 20 19 18 23 23 C 1.52997 * 109.47092 * 60.00194 * 20 19 18 24 24 C 1.53002 * 109.46817 * 184.99807 * 16 15 14 25 25 H 0.96705 * 113.99878 * 60.00159 * 1 2 3 26 26 H 1.08992 * 109.47402 * 240.00093 * 2 1 3 27 27 H 1.48492 * 110.00251 * 298.67612 * 3 2 1 28 28 H 1.48506 * 110.00205 * 60.00022 * 3 2 1 29 29 H 1.07999 * 119.98029 * 0.02789 * 5 4 2 30 30 H 1.07997 * 119.94107 * 180.02562 * 6 5 4 31 31 H 1.07999 * 120.03113 * 180.25862 * 12 7 6 32 32 H 1.09001 * 109.46993 * 59.99438 * 15 14 13 33 33 H 1.09004 * 109.46505 * 300.00213 * 15 14 13 34 34 H 1.09001 * 109.47194 * 299.99650 * 18 16 15 35 35 H 1.08992 * 109.47399 * 59.99823 * 18 16 15 36 36 H 1.09000 * 109.47437 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.47508 * 59.99571 * 19 18 16 38 38 H 0.96697 * 113.99983 * 59.99480 * 22 20 19 39 39 H 1.09001 * 109.47375 * 180.02562 * 23 20 19 40 40 H 1.09002 * 109.47497 * 59.99850 * 23 20 19 41 41 H 1.09002 * 109.47075 * 299.99262 * 24 16 15 42 42 H 1.08996 * 109.47407 * 60.00219 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9312 -0.7103 1.2305 5 6 2.4538 0.0158 2.2828 6 6 2.9154 -0.6356 3.4121 7 6 2.8555 -2.0145 3.4906 8 6 3.3588 -2.7211 4.7228 9 9 3.8351 -1.7776 5.6395 10 9 2.3141 -3.4491 5.3025 11 9 4.3949 -3.5925 4.3703 12 6 2.3297 -2.7451 2.4423 13 6 1.8709 -2.0945 1.3064 14 8 1.3577 -2.8111 0.2721 15 6 1.3264 -4.2322 0.4197 16 6 0.7205 -4.8622 -0.8360 17 1 -0.2590 -4.4234 -1.0262 18 6 1.6380 -4.5996 -2.0318 19 6 1.0317 -5.2291 -3.2877 20 6 0.8827 -6.7378 -3.0808 21 1 1.8621 -7.1769 -2.8907 22 8 0.3170 -7.3259 -4.2539 23 6 -0.0347 -7.0004 -1.8849 24 6 0.5719 -6.3708 -0.6287 25 1 -0.3933 0.4417 -0.7651 26 1 1.7923 -0.5138 -0.8899 27 1 1.5879 2.4586 -1.2242 28 1 1.5613 2.4680 1.2085 29 1 2.5021 1.0931 2.2239 30 1 3.3233 -0.0661 4.2340 31 1 2.2793 -3.8221 2.5058 32 1 0.7202 -4.4941 1.2869 33 1 2.3410 -4.6053 0.5597 34 1 1.7439 -3.5248 -2.1795 35 1 2.6174 -5.0384 -1.8416 36 1 1.6856 -5.0425 -4.1396 37 1 0.0524 -4.7900 -3.4777 38 1 0.8471 -7.1983 -5.0525 39 1 -0.1405 -8.0751 -1.7372 40 1 -1.0141 -6.5612 -2.0749 41 1 1.5514 -6.8096 -0.4385 42 1 -0.0817 -6.5579 0.2232 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_15244780_16737256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:48:31 Heat of formation + Delta-G solvation = -252.873326 kcal Electronic energy + Delta-G solvation = -29572.999400 eV Core-core repulsion = 24876.449492 eV Total energy + Delta-G solvation = -4696.549908 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.127 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.13647 -48.65161 -48.59503 -41.70592 -40.26129 -38.82281 -37.81149 -36.74350 -33.76992 -32.22119 -31.93751 -30.97906 -28.55371 -26.95579 -25.21244 -24.01159 -23.79683 -22.59512 -22.05473 -20.97722 -20.01859 -19.46095 -19.41322 -18.61067 -18.26623 -17.84347 -17.32962 -17.15405 -17.11625 -16.43142 -15.86371 -15.59121 -15.49596 -15.48233 -15.37815 -15.03666 -15.02479 -14.88405 -14.76607 -14.74375 -14.38212 -14.35888 -13.96226 -13.82922 -13.62773 -13.33576 -13.27313 -13.08363 -12.95619 -12.70602 -12.25971 -12.11557 -12.09469 -11.87101 -11.70272 -11.68627 -11.20720 -10.78807 -10.52523 -10.37928 -9.46725 -5.05848 -0.35974 0.12351 1.16612 1.49302 1.60555 1.84029 1.94152 2.19055 2.65237 2.99342 3.09012 3.23913 3.41274 3.49246 3.51626 3.59486 3.62331 3.75990 3.86028 3.91117 3.99008 4.00989 4.10277 4.19215 4.22781 4.23710 4.32522 4.34150 4.37010 4.48305 4.53483 4.68546 4.80363 4.85595 4.94638 4.96253 4.98722 5.05022 5.05524 5.06984 5.20164 5.31504 5.37379 6.15467 6.39999 6.65774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.529 6.529 2 C -0.068 4.068 3 Si 0.685 3.315 4 C -0.075 4.075 5 C -0.079 4.079 6 C -0.105 4.105 7 C -0.137 4.137 8 C 0.508 3.492 9 F -0.173 7.173 10 F -0.175 7.175 11 F -0.174 7.174 12 C -0.163 4.163 13 C 0.159 3.841 14 O -0.295 6.295 15 C 0.057 3.943 16 C -0.086 4.086 17 H 0.086 0.914 18 C -0.111 4.111 19 C -0.152 4.152 20 C 0.103 3.897 21 H 0.055 0.945 22 O -0.569 6.569 23 C -0.111 4.111 24 C -0.111 4.111 25 H 0.380 0.620 26 H 0.080 0.920 27 H -0.258 1.258 28 H -0.252 1.252 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.379 0.621 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.807 1.053 -3.026 4.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.177 4.177 3 Si 0.585 3.415 4 C -0.075 4.075 5 C -0.097 4.097 6 C -0.123 4.123 7 C -0.138 4.138 8 C 0.454 3.546 9 F -0.155 7.155 10 F -0.156 7.156 11 F -0.156 7.156 12 C -0.182 4.182 13 C 0.112 3.888 14 O -0.208 6.208 15 C -0.018 4.018 16 C -0.105 4.105 17 H 0.104 0.896 18 C -0.148 4.148 19 C -0.190 4.190 20 C 0.044 3.956 21 H 0.073 0.927 22 O -0.375 6.375 23 C -0.149 4.149 24 C -0.148 4.148 25 H 0.228 0.772 26 H 0.098 0.902 27 H -0.183 1.183 28 H -0.176 1.176 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.226 0.774 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.151 1.434 -2.204 3.397 hybrid contribution -0.510 -0.334 -0.470 0.769 sum 1.642 1.100 -2.673 3.324 Atomic orbital electron populations 1.86611 1.17318 1.80149 1.49594 1.24657 0.84884 1.10495 0.97705 0.95107 0.91416 0.74411 0.80532 1.18833 1.01794 0.90384 0.96533 1.20972 0.96739 1.00387 0.91584 1.20885 1.00046 0.92255 0.99150 1.19763 1.04851 0.95096 0.94100 1.18252 0.75599 0.77095 0.83641 1.93189 1.88711 1.64598 1.68971 1.93240 1.57808 1.78595 1.85972 1.93235 1.59680 1.70767 1.91891 1.20940 1.03037 1.00860 0.93393 1.18521 0.92831 0.90691 0.86746 1.86143 1.76924 1.19701 1.38011 1.23031 1.01360 0.77946 0.99454 1.21218 1.00598 0.95381 0.93273 0.89554 1.21511 0.98336 1.01572 0.93391 1.22277 1.02143 0.96264 0.98289 1.21845 0.96140 0.91727 0.85890 0.92702 1.86521 1.52746 1.79297 1.18917 1.21446 0.99290 1.01673 0.92473 1.21494 1.01980 0.93336 0.98008 0.77217 0.90219 1.18292 1.17645 0.83652 0.83618 0.84127 0.91500 0.91499 0.90765 0.91682 0.91493 0.90952 0.77377 0.90773 0.90923 0.91186 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.59 12.86 -35.23 -0.45 -1.04 16 2 C -0.07 0.02 2.37 36.01 0.09 0.11 16 3 Si 0.68 -1.17 30.20 -169.99 -5.13 -6.30 16 4 C -0.07 -0.06 5.30 -104.47 -0.55 -0.61 16 5 C -0.08 0.02 8.66 -39.60 -0.34 -0.32 16 6 C -0.11 0.00 9.43 -39.56 -0.37 -0.37 16 7 C -0.14 -0.13 5.37 -104.65 -0.56 -0.69 16 8 C 0.51 0.75 3.32 36.01 0.12 0.87 16 9 F -0.17 -0.29 15.97 2.25 0.04 -0.25 16 10 F -0.17 -0.41 17.23 2.25 0.04 -0.37 16 11 F -0.17 -0.34 17.24 2.25 0.04 -0.30 16 12 C -0.16 -0.11 8.59 -39.43 -0.34 -0.45 16 13 C 0.16 0.19 6.66 -39.22 -0.26 -0.07 16 14 O -0.30 -0.25 9.00 -19.40 -0.17 -0.43 16 15 C 0.06 -0.07 4.12 37.16 0.15 0.08 16 16 C -0.09 0.13 2.43 -90.62 -0.22 -0.08 16 17 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 18 C -0.11 0.18 5.10 -26.73 -0.14 0.05 16 19 C -0.15 0.21 5.55 -26.73 -0.15 0.07 16 20 C 0.10 -0.07 3.47 -26.73 -0.09 -0.16 16 21 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 22 O -0.57 -0.43 13.32 -35.23 -0.47 -0.90 16 23 C -0.11 0.07 5.58 -26.71 -0.15 -0.08 16 24 C -0.11 0.23 5.21 -26.70 -0.14 0.09 16 25 H 0.38 -1.04 8.74 45.56 0.40 -0.65 16 26 H 0.08 -0.10 7.83 -51.93 -0.41 -0.51 16 27 H -0.26 -0.11 7.11 56.52 0.40 0.29 16 28 H -0.25 -0.19 6.75 56.52 0.38 0.19 16 29 H 0.15 -0.28 4.90 -52.49 -0.26 -0.54 16 30 H 0.15 -0.24 7.15 -52.49 -0.38 -0.62 16 31 H 0.14 -0.11 6.30 -52.49 -0.33 -0.44 16 32 H 0.07 -0.11 7.65 -51.93 -0.40 -0.50 16 33 H 0.07 -0.15 7.67 -51.93 -0.40 -0.55 16 34 H 0.07 -0.07 7.82 -51.93 -0.41 -0.48 16 35 H 0.06 -0.13 8.14 -51.93 -0.42 -0.55 16 36 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 37 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 38 H 0.38 -1.17 9.08 45.56 0.41 -0.76 16 39 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 40 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 41 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 42 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 LS Contribution 351.23 15.07 5.29 5.29 Total: 0.00 -6.46 351.23 -8.56 -15.02 By element: Atomic # 1 Polarization: -4.36 SS G_CDS: -4.78 Total: -9.15 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -2.96 Total: -1.58 kcal Atomic # 8 Polarization: -1.27 SS G_CDS: -1.10 Total: -2.37 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.11 Total: -0.93 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: -5.13 Total: -6.30 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -6.46 -8.56 -15.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_15244780_16737256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -237.852 kcal (2) G-P(sol) polarization free energy of solvation -6.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds