Wall clock time and date at job start Tue Mar 9 2021 17:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86302 * 109.46827 * 2 1 4 4 C 1.50701 * 109.46847 * 119.99632 * 2 1 3 5 5 C 1.38119 * 120.02693 * 254.97758 * 4 2 1 6 6 C 1.38295 * 120.05041 * 180.02562 * 5 4 2 7 7 C 1.38238 * 120.11412 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.97502 * 180.02562 * 7 6 5 9 9 F 1.39901 * 109.46903 * 359.97438 * 8 7 6 10 10 F 1.39905 * 109.47182 * 119.99760 * 8 7 6 11 11 F 1.39896 * 109.47124 * 239.99763 * 8 7 6 12 12 C 1.38172 * 120.05616 * 359.76715 * 7 6 5 13 13 C 1.38711 * 119.94138 * 0.48681 * 12 7 6 14 14 O 1.35893 * 120.05609 * 179.76648 * 13 12 7 15 15 C 1.42904 * 117.00281 * 359.72888 * 14 13 12 16 16 C 1.52997 * 109.47396 * 180.02562 * 15 14 13 17 17 H 1.09002 * 109.47153 * 304.99576 * 16 15 14 18 18 C 1.53000 * 109.47060 * 64.99895 * 16 15 14 19 19 C 1.53001 * 109.46886 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.46963 * 299.99499 * 19 18 16 21 21 H 1.09002 * 109.47067 * 300.00341 * 20 19 18 22 22 O 1.42900 * 109.47442 * 180.02562 * 20 19 18 23 23 C 1.52997 * 109.47092 * 60.00194 * 20 19 18 24 24 C 1.53002 * 109.46817 * 184.99807 * 16 15 14 25 25 H 0.96705 * 113.99878 * 60.00159 * 1 2 3 26 26 H 1.08992 * 109.47402 * 240.00093 * 2 1 3 27 27 H 1.48492 * 110.00251 * 298.67612 * 3 2 1 28 28 H 1.48506 * 110.00205 * 60.00022 * 3 2 1 29 29 H 1.07999 * 119.98029 * 0.02789 * 5 4 2 30 30 H 1.07997 * 119.94107 * 180.02562 * 6 5 4 31 31 H 1.07999 * 120.03113 * 180.25862 * 12 7 6 32 32 H 1.09001 * 109.46993 * 59.99438 * 15 14 13 33 33 H 1.09004 * 109.46505 * 300.00213 * 15 14 13 34 34 H 1.09001 * 109.47194 * 299.99650 * 18 16 15 35 35 H 1.08992 * 109.47399 * 59.99823 * 18 16 15 36 36 H 1.09000 * 109.47437 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.47508 * 59.99571 * 19 18 16 38 38 H 0.96697 * 113.99983 * 59.99480 * 22 20 19 39 39 H 1.09001 * 109.47375 * 180.02562 * 23 20 19 40 40 H 1.09002 * 109.47497 * 59.99850 * 23 20 19 41 41 H 1.09002 * 109.47075 * 299.99262 * 24 16 15 42 42 H 1.08996 * 109.47407 * 60.00219 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9312 -0.7103 1.2305 5 6 2.4538 0.0158 2.2828 6 6 2.9154 -0.6356 3.4121 7 6 2.8555 -2.0145 3.4906 8 6 3.3588 -2.7211 4.7228 9 9 3.8351 -1.7776 5.6395 10 9 2.3141 -3.4491 5.3025 11 9 4.3949 -3.5925 4.3703 12 6 2.3297 -2.7451 2.4423 13 6 1.8709 -2.0945 1.3064 14 8 1.3577 -2.8111 0.2721 15 6 1.3264 -4.2322 0.4197 16 6 0.7205 -4.8622 -0.8360 17 1 -0.2590 -4.4234 -1.0262 18 6 1.6380 -4.5996 -2.0318 19 6 1.0317 -5.2291 -3.2877 20 6 0.8827 -6.7378 -3.0808 21 1 1.8621 -7.1769 -2.8907 22 8 0.3170 -7.3259 -4.2539 23 6 -0.0347 -7.0004 -1.8849 24 6 0.5719 -6.3708 -0.6287 25 1 -0.3933 0.4417 -0.7651 26 1 1.7923 -0.5138 -0.8899 27 1 1.5879 2.4586 -1.2242 28 1 1.5613 2.4680 1.2085 29 1 2.5021 1.0931 2.2239 30 1 3.3233 -0.0661 4.2340 31 1 2.2793 -3.8221 2.5058 32 1 0.7202 -4.4941 1.2869 33 1 2.3410 -4.6053 0.5597 34 1 1.7439 -3.5248 -2.1795 35 1 2.6174 -5.0384 -1.8416 36 1 1.6856 -5.0425 -4.1396 37 1 0.0524 -4.7900 -3.4777 38 1 0.8471 -7.1983 -5.0525 39 1 -0.1405 -8.0751 -1.7372 40 1 -1.0141 -6.5612 -2.0749 41 1 1.5514 -6.8096 -0.4385 42 1 -0.0817 -6.5579 0.2232 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_15244780_16737256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:48:30 Heat of formation + Delta-G solvation = -249.663871 kcal Electronic energy + Delta-G solvation = -29572.860228 eV Core-core repulsion = 24876.449492 eV Total energy + Delta-G solvation = -4696.410736 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.127 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -51.26051 -48.77538 -48.73065 -41.67783 -40.18717 -38.79467 -37.80884 -36.70476 -33.77209 -32.17071 -31.83268 -30.95121 -28.58056 -26.87675 -25.23943 -23.94858 -23.71962 -22.57998 -22.00471 -20.88589 -20.04441 -19.58642 -19.51493 -18.60366 -18.23562 -17.84633 -17.32413 -17.10183 -17.07723 -16.37027 -15.83074 -15.63102 -15.55714 -15.49679 -15.38467 -15.16076 -14.98638 -14.90525 -14.87988 -14.79986 -14.38647 -14.30125 -13.96115 -13.79785 -13.58105 -13.27216 -13.20363 -13.08585 -12.91462 -12.64750 -12.16504 -12.08563 -12.02090 -11.87350 -11.61066 -11.60026 -11.11034 -10.72615 -10.48000 -10.37628 -9.46030 -4.93075 -0.36963 0.13544 1.26272 1.52131 1.59089 1.91540 1.99827 2.19744 2.57494 2.91531 3.21044 3.28403 3.35265 3.55722 3.62032 3.67804 3.70920 3.82256 3.91294 3.97661 4.06843 4.10455 4.17484 4.26518 4.32808 4.33866 4.38300 4.46880 4.47664 4.57893 4.59021 4.79748 4.84213 4.96256 4.98535 5.04251 5.06936 5.09453 5.13565 5.16598 5.29525 5.39906 5.43553 6.19298 6.57112 6.85104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.081 4.081 3 Si 0.769 3.231 4 C -0.088 4.088 5 C -0.080 4.080 6 C -0.106 4.106 7 C -0.146 4.146 8 C 0.510 3.490 9 F -0.175 7.175 10 F -0.182 7.182 11 F -0.178 7.178 12 C -0.167 4.167 13 C 0.146 3.854 14 O -0.306 6.306 15 C 0.054 3.946 16 C -0.081 4.081 17 H 0.072 0.928 18 C -0.107 4.107 19 C -0.146 4.146 20 C 0.101 3.899 21 H 0.064 0.936 22 O -0.591 6.591 23 C -0.114 4.114 24 C -0.105 4.105 25 H 0.393 0.607 26 H 0.087 0.913 27 H -0.286 1.286 28 H -0.283 1.283 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.151 0.849 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.393 0.607 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.648 1.250 -3.017 4.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.189 4.189 3 Si 0.673 3.327 4 C -0.089 4.089 5 C -0.098 4.098 6 C -0.124 4.124 7 C -0.148 4.148 8 C 0.456 3.544 9 F -0.156 7.156 10 F -0.163 7.163 11 F -0.159 7.159 12 C -0.186 4.186 13 C 0.100 3.900 14 O -0.219 6.219 15 C -0.020 4.020 16 C -0.100 4.100 17 H 0.090 0.910 18 C -0.144 4.144 19 C -0.184 4.184 20 C 0.042 3.958 21 H 0.082 0.918 22 O -0.400 6.400 23 C -0.151 4.151 24 C -0.142 4.142 25 H 0.244 0.756 26 H 0.105 0.895 27 H -0.213 1.213 28 H -0.210 1.210 29 H 0.179 0.821 30 H 0.179 0.821 31 H 0.168 0.832 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.243 0.757 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.000 1.611 -2.213 4.061 hybrid contribution -0.812 -0.404 -0.498 1.035 sum 2.188 1.206 -2.710 3.686 Atomic orbital electron populations 1.86562 1.18254 1.80774 1.50732 1.24946 0.84343 1.11919 0.97667 0.94130 0.90015 0.71465 0.77080 1.19119 1.01923 0.90609 0.97231 1.21163 0.96291 1.01116 0.91211 1.21113 0.99605 0.92065 0.99635 1.19808 1.05489 0.95551 0.93917 1.18305 0.75337 0.76950 0.83778 1.93181 1.88722 1.64600 1.69102 1.93224 1.58120 1.78809 1.86142 1.93225 1.59839 1.70937 1.91907 1.21066 1.02866 1.01466 0.93224 1.18677 0.93259 0.91063 0.87015 1.86127 1.77021 1.20604 1.38126 1.23142 1.02173 0.77165 0.99568 1.21153 0.99892 0.95593 0.93339 0.90960 1.21476 0.98649 1.01172 0.93132 1.22214 1.01636 0.95734 0.98829 1.21917 0.96341 0.92058 0.85463 0.91788 1.86482 1.53843 1.79629 1.20020 1.21468 0.98930 1.01368 0.93348 1.21452 1.02565 0.92779 0.97420 0.75647 0.89466 1.21307 1.21024 0.82143 0.82128 0.83170 0.91240 0.90241 0.91397 0.90794 0.90548 0.92297 0.75721 0.91230 0.92223 0.90064 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.47 12.86 -148.98 -1.92 -3.38 16 2 C -0.08 0.05 2.37 71.24 0.17 0.22 16 3 Si 0.77 -2.87 30.20 68.60 2.07 -0.79 16 4 C -0.09 -0.14 5.30 -19.77 -0.10 -0.25 16 5 C -0.08 0.06 8.66 22.26 0.19 0.26 16 6 C -0.11 0.05 9.43 22.28 0.21 0.26 16 7 C -0.15 -0.26 5.37 -19.88 -0.11 -0.37 16 8 C 0.51 1.51 3.32 71.24 0.24 1.75 16 9 F -0.17 -0.55 15.97 44.97 0.72 0.16 16 10 F -0.18 -0.89 17.23 44.97 0.77 -0.12 16 11 F -0.18 -0.68 17.24 44.97 0.78 0.10 16 12 C -0.17 -0.24 8.59 22.37 0.19 -0.05 16 13 C 0.15 0.38 6.66 22.51 0.15 0.53 16 14 O -0.31 -0.63 9.00 -92.35 -0.83 -1.46 16 15 C 0.05 -0.13 4.12 71.98 0.30 0.16 16 16 C -0.08 0.23 2.43 -10.79 -0.03 0.20 16 17 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 18 C -0.11 0.36 5.10 30.59 0.16 0.51 16 19 C -0.15 0.38 5.55 30.60 0.17 0.55 16 20 C 0.10 -0.12 3.47 30.59 0.11 -0.01 16 21 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 22 O -0.59 -1.10 13.32 -148.98 -1.98 -3.08 16 23 C -0.11 0.08 5.58 30.61 0.17 0.25 16 24 C -0.10 0.44 5.21 30.61 0.16 0.60 16 25 H 0.39 -1.97 8.74 -74.05 -0.65 -2.62 16 26 H 0.09 -0.22 7.83 -2.39 -0.02 -0.24 16 27 H -0.29 -0.24 7.11 99.48 0.71 0.47 16 28 H -0.28 -0.41 6.75 99.48 0.67 0.26 16 29 H 0.16 -0.73 4.90 -2.91 -0.01 -0.75 16 30 H 0.16 -0.66 7.15 -2.91 -0.02 -0.68 16 31 H 0.15 -0.23 6.30 -2.91 -0.02 -0.25 16 32 H 0.07 -0.22 7.65 -2.39 -0.02 -0.23 16 33 H 0.08 -0.40 7.67 -2.39 -0.02 -0.42 16 34 H 0.07 -0.12 7.82 -2.39 -0.02 -0.14 16 35 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.08 -0.35 8.14 -2.39 -0.02 -0.36 16 37 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.39 -2.37 9.08 -74.06 -0.67 -3.04 16 39 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 42 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 Total: 0.00 -14.77 351.23 1.34 -13.44 By element: Atomic # 1 Polarization: -9.23 SS G_CDS: -0.24 Total: -9.47 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 1.97 Total: 4.61 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: -4.73 Total: -7.93 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 2.27 Total: 0.14 kcal Atomic # 14 Polarization: -2.87 SS G_CDS: 2.07 Total: -0.79 kcal Total: -14.77 1.34 -13.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_15244780_16737256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -236.225 kcal (2) G-P(sol) polarization free energy of solvation -14.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds