Wall clock time and date at job start Tue Mar 9 2021 13:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00134 * 2 1 4 4 C 1.52997 * 109.47264 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.47457 * 64.99865 * 4 3 2 6 6 C 1.35992 * 117.00222 * 179.97438 * 5 4 3 7 7 C 1.39146 * 120.07342 * 179.72598 * 6 5 4 8 8 O 1.36003 * 120.07482 * 0.02562 * 7 6 5 9 9 C 1.42898 * 117.00242 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47123 * 179.97438 * 9 8 7 11 11 H 1.08997 * 112.84741 * 45.33075 * 10 9 8 12 12 C 1.53775 * 113.61272 * 176.52628 * 10 9 8 13 13 C 1.53784 * 87.07945 * 139.98246 * 12 10 9 14 14 H 1.08993 * 113.61640 * 89.11915 * 13 12 10 15 15 O 1.42904 * 113.61212 * 219.93697 * 13 12 10 16 16 C 1.53780 * 113.61312 * 274.13483 * 10 9 8 17 17 C 1.38563 * 119.85585 * 179.72166 * 7 6 5 18 18 C 1.38248 * 119.99721 * 0.55589 * 17 7 6 19 19 C 1.50703 * 119.92613 * 179.69853 * 18 17 7 20 20 O 1.42897 * 109.47104 * 65.02226 * 19 18 17 21 21 Si 1.86298 * 109.46821 * 185.01887 * 19 18 17 22 22 C 1.38246 * 120.14250 * 359.72063 * 18 17 7 23 23 C 1.38239 * 120.14928 * 0.02562 * 22 18 17 24 24 H 1.09002 * 109.46796 * 60.00253 * 1 2 3 25 25 H 1.08994 * 109.46829 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47036 * 300.00109 * 1 2 3 27 27 H 1.09001 * 109.47103 * 300.00246 * 3 2 1 28 28 H 1.09004 * 109.47054 * 59.99750 * 3 2 1 29 29 H 1.09004 * 109.46881 * 185.00370 * 4 3 2 30 30 H 1.09002 * 109.47196 * 304.99885 * 4 3 2 31 31 H 1.08997 * 109.46940 * 299.99833 * 9 8 7 32 32 H 1.09006 * 109.47042 * 59.99749 * 9 8 7 33 33 H 1.08999 * 113.62046 * 254.52991 * 12 10 9 34 34 H 1.09002 * 113.61604 * 25.35219 * 12 10 9 35 35 H 0.96703 * 113.99658 * 180.02562 * 15 13 12 36 36 H 1.08997 * 113.61501 * 334.57158 * 16 10 9 37 37 H 1.09003 * 113.61249 * 105.46937 * 16 10 9 38 38 H 1.07998 * 120.00485 * 180.27260 * 17 7 6 39 39 H 1.08997 * 109.47362 * 305.02070 * 19 18 17 40 40 H 0.96700 * 113.99972 * 179.97438 * 20 19 18 41 41 H 1.48491 * 110.00227 * 300.00258 * 21 19 18 42 42 H 1.48509 * 109.99909 * 61.32386 * 21 19 18 43 43 H 1.08001 * 119.92341 * 179.97438 * 22 18 17 44 44 H 1.08005 * 119.99749 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9659 0.5792 -1.2201 6 6 5.3041 0.3982 -1.3812 7 6 5.7931 -0.1908 -2.5431 8 8 4.9340 -0.5862 -3.5205 9 6 5.5070 -1.1827 -4.6857 10 6 4.3940 -1.5600 -5.6654 11 1 3.6543 -0.7693 -5.7905 12 6 4.9118 -2.1350 -6.9943 13 6 3.7501 -3.1399 -6.9215 14 1 2.8333 -2.7823 -7.3900 15 8 4.1077 -4.4594 -7.3377 16 6 3.7779 -2.9427 -5.3949 17 6 7.1578 -0.3678 -2.7051 18 6 8.0295 0.0299 -1.7084 19 6 9.5130 -0.1696 -1.8833 20 8 9.9778 0.6382 -2.9665 21 14 10.3946 0.3235 -0.3180 22 6 7.5431 0.6098 -0.5515 23 6 6.1831 0.7941 -0.3859 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 3.9785 2.1766 0.0903 30 1 3.8508 0.5686 0.8427 31 1 6.1848 -0.4735 -5.1609 32 1 6.0593 -2.0784 -4.4012 33 1 4.8358 -1.4396 -7.8302 34 1 5.8960 -2.5969 -6.9162 35 1 3.3810 -5.0960 -7.2945 36 1 4.4508 -3.6271 -4.8783 37 1 2.7877 -2.8984 -4.9413 38 1 7.5403 -0.8206 -3.6079 39 1 9.7155 -1.2186 -2.0994 40 1 10.9265 0.5602 -3.1364 41 1 10.1264 1.7517 -0.0124 42 1 9.9433 -0.5308 0.8098 43 1 8.2272 0.9188 0.2250 44 1 5.8058 1.2470 0.5190 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_16901878_11354860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:02 Heat of formation + Delta-G solvation = -139.559073 kcal Electronic energy + Delta-G solvation = -26159.291835 eV Core-core repulsion = 22238.653144 eV Total energy + Delta-G solvation = -3920.638691 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.66553 -40.49634 -39.54551 -38.70130 -38.41486 -36.98862 -35.97708 -32.44942 -31.50648 -30.84794 -29.22255 -27.36160 -26.74137 -26.29142 -24.82535 -23.62764 -22.63423 -22.03794 -20.57236 -19.53252 -18.62192 -18.40434 -18.19705 -17.83700 -17.60863 -16.94746 -16.69851 -16.37353 -16.13304 -16.06769 -15.92579 -15.68067 -15.58628 -15.15545 -14.54652 -14.33461 -14.07677 -13.79704 -13.65477 -13.51022 -13.45661 -13.17337 -12.78988 -12.62735 -12.52518 -12.44655 -12.21665 -12.12183 -12.00435 -11.89188 -11.75669 -11.64973 -11.21675 -10.74740 -10.69297 -10.32075 -9.70138 -8.75412 -4.96884 0.26187 0.35372 1.28327 1.64758 1.97680 2.15805 2.16483 2.61114 2.72317 3.23415 3.39919 3.47274 3.55807 3.68604 3.75217 3.80869 3.90441 3.93133 3.94112 4.02243 4.17638 4.20340 4.24558 4.26248 4.31418 4.36929 4.41599 4.42674 4.43281 4.50553 4.59514 4.67582 4.70202 4.76570 4.77325 4.77385 4.98285 5.05189 5.12161 5.16869 5.36046 5.44414 5.62786 6.08573 6.16684 6.61732 6.64591 6.69809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.063 3.937 4 C 0.058 3.942 5 O -0.292 6.292 6 C 0.110 3.890 7 C 0.107 3.893 8 O -0.298 6.298 9 C 0.070 3.930 10 C -0.108 4.108 11 H 0.105 0.895 12 C -0.120 4.120 13 C 0.076 3.924 14 H 0.084 0.916 15 O -0.560 6.560 16 C -0.162 4.162 17 C -0.144 4.144 18 C -0.073 4.073 19 C -0.069 4.069 20 O -0.546 6.546 21 Si 0.683 3.317 22 C -0.120 4.120 23 C -0.169 4.169 24 H 0.043 0.957 25 H 0.088 0.912 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.380 0.620 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.140 0.860 39 H 0.074 0.926 40 H 0.382 0.618 41 H -0.250 1.250 42 H -0.254 1.254 43 H 0.122 0.878 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.865 0.364 0.719 1.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.018 4.018 5 O -0.206 6.206 6 C 0.064 3.936 7 C 0.061 3.939 8 O -0.212 6.212 9 C -0.006 4.006 10 C -0.126 4.126 11 H 0.123 0.877 12 C -0.157 4.157 13 C 0.017 3.983 14 H 0.102 0.898 15 O -0.366 6.366 16 C -0.200 4.200 17 C -0.163 4.163 18 C -0.073 4.073 19 C -0.179 4.179 20 O -0.352 6.352 21 Si 0.585 3.415 22 C -0.138 4.138 23 C -0.187 4.187 24 H 0.062 0.938 25 H 0.106 0.894 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.228 0.772 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.157 0.843 39 H 0.091 0.909 40 H 0.229 0.771 41 H -0.175 1.175 42 H -0.179 1.179 43 H 0.140 0.860 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.451 0.912 1.289 1.643 hybrid contribution -0.984 -0.079 0.060 0.989 sum -0.533 0.833 1.349 1.673 Atomic orbital electron populations 1.22777 0.80555 1.03163 1.00079 1.87970 1.20033 1.26886 1.95430 1.22551 0.91213 0.86000 1.01589 1.22905 0.94144 0.98176 0.86530 1.86250 1.18684 1.76848 1.38806 1.18219 0.83472 0.99049 0.92892 1.18195 0.88644 0.98620 0.88432 1.86190 1.33623 1.74878 1.26483 1.22835 0.96136 0.97319 0.84276 1.22297 0.98039 0.97800 0.94466 0.87669 1.23059 0.99349 0.96846 0.96441 1.23331 0.97819 0.83412 0.93743 0.89794 1.86520 1.41039 1.19755 1.89268 1.23784 1.02309 0.96505 0.97406 1.20894 0.90426 1.04338 1.00609 1.18994 0.93483 1.00466 0.94382 1.24651 0.94498 0.97633 1.01137 1.86499 1.29028 1.67349 1.52308 0.95407 0.89687 0.80739 0.75691 1.20557 0.94959 1.00770 0.97478 1.20947 0.93148 1.05342 0.99309 0.93822 0.89352 0.93946 0.91916 0.90936 0.90352 0.90986 0.91589 0.91755 0.90128 0.88810 0.77242 0.89129 0.90724 0.84273 0.90857 0.77070 1.17517 1.17932 0.86041 0.84396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.01 11.01 101.05 1.11 1.12 16 2 O -0.38 -1.27 10.67 -40.08 -0.43 -1.70 16 3 C 0.06 0.05 6.32 37.16 0.23 0.28 16 4 C 0.06 0.07 5.12 37.16 0.19 0.26 16 5 O -0.29 -1.43 9.89 -40.68 -0.40 -1.83 16 6 C 0.11 0.52 6.70 -39.13 -0.26 0.26 16 7 C 0.11 0.52 6.70 -39.12 -0.26 0.26 16 8 O -0.30 -1.43 9.92 -34.25 -0.34 -1.77 16 9 C 0.07 0.12 4.57 37.16 0.17 0.29 16 10 C -0.11 -0.07 4.00 -89.81 -0.36 -0.43 16 11 H 0.11 0.08 8.14 -51.93 -0.42 -0.35 16 12 C -0.12 -0.01 7.48 -25.92 -0.19 -0.21 16 13 C 0.08 0.02 5.21 -25.83 -0.13 -0.12 16 14 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 15 O -0.56 -0.73 13.68 -35.23 -0.48 -1.21 16 16 C -0.16 -0.12 7.48 -25.83 -0.19 -0.31 16 17 C -0.14 -0.52 8.67 -39.46 -0.34 -0.86 16 18 C -0.07 -0.25 5.38 -104.61 -0.56 -0.81 16 19 C -0.07 -0.04 2.79 36.01 0.10 0.06 16 20 O -0.55 -0.37 12.81 -35.23 -0.45 -0.82 16 21 Si 0.68 -0.40 29.84 -169.99 -5.07 -5.47 16 22 C -0.12 -0.41 8.66 -39.58 -0.34 -0.75 16 23 C -0.17 -0.53 9.04 -39.46 -0.36 -0.88 16 24 H 0.04 -0.02 8.14 -51.93 -0.42 -0.44 16 25 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 26 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 27 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 28 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 29 H 0.08 -0.08 7.66 -51.93 -0.40 -0.48 16 30 H 0.07 0.05 7.66 -51.93 -0.40 -0.35 16 31 H 0.07 0.06 7.65 -51.93 -0.40 -0.34 16 32 H 0.06 0.06 7.41 -51.93 -0.38 -0.32 16 33 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 34 H 0.09 0.04 8.10 -51.93 -0.42 -0.38 16 35 H 0.38 -1.02 9.12 45.56 0.42 -0.60 16 36 H 0.09 0.12 7.92 -51.93 -0.41 -0.29 16 37 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 38 H 0.14 0.28 6.30 -52.49 -0.33 -0.05 16 39 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 40 H 0.38 -1.71 8.74 45.56 0.40 -1.31 16 41 H -0.25 -0.61 7.04 56.52 0.40 -0.21 16 42 H -0.25 -0.48 7.11 56.52 0.40 -0.07 16 43 H 0.12 0.30 4.85 -52.49 -0.25 0.04 16 44 H 0.14 0.07 6.30 -52.48 -0.33 -0.26 16 LS Contribution 363.04 15.07 5.47 5.47 Total: 0.00 -9.48 363.04 -8.84 -18.31 By element: Atomic # 1 Polarization: -3.20 SS G_CDS: -5.93 Total: -9.13 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.20 Total: -1.85 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -2.10 Total: -7.33 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: -5.07 Total: -5.47 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -9.48 -8.84 -18.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16901878_11354860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.245 kcal (2) G-P(sol) polarization free energy of solvation -9.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds