Wall clock time and date at job start Tue Mar 9 2021 13:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00134 * 2 1 4 4 C 1.52997 * 109.47264 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.47457 * 64.99865 * 4 3 2 6 6 C 1.35992 * 117.00222 * 179.97438 * 5 4 3 7 7 C 1.39146 * 120.07342 * 179.72598 * 6 5 4 8 8 O 1.36003 * 120.07482 * 0.02562 * 7 6 5 9 9 C 1.42898 * 117.00242 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47123 * 179.97438 * 9 8 7 11 11 H 1.08997 * 112.84741 * 45.33075 * 10 9 8 12 12 C 1.53775 * 113.61272 * 176.52628 * 10 9 8 13 13 C 1.53784 * 87.07945 * 139.98246 * 12 10 9 14 14 H 1.08993 * 113.61640 * 89.11915 * 13 12 10 15 15 O 1.42904 * 113.61212 * 219.93697 * 13 12 10 16 16 C 1.53780 * 113.61312 * 274.13483 * 10 9 8 17 17 C 1.38563 * 119.85585 * 179.72166 * 7 6 5 18 18 C 1.38248 * 119.99721 * 0.55589 * 17 7 6 19 19 C 1.50703 * 119.92613 * 179.69853 * 18 17 7 20 20 O 1.42897 * 109.47104 * 65.02226 * 19 18 17 21 21 Si 1.86298 * 109.46821 * 185.01887 * 19 18 17 22 22 C 1.38246 * 120.14250 * 359.72063 * 18 17 7 23 23 C 1.38239 * 120.14928 * 0.02562 * 22 18 17 24 24 H 1.09002 * 109.46796 * 60.00253 * 1 2 3 25 25 H 1.08994 * 109.46829 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47036 * 300.00109 * 1 2 3 27 27 H 1.09001 * 109.47103 * 300.00246 * 3 2 1 28 28 H 1.09004 * 109.47054 * 59.99750 * 3 2 1 29 29 H 1.09004 * 109.46881 * 185.00370 * 4 3 2 30 30 H 1.09002 * 109.47196 * 304.99885 * 4 3 2 31 31 H 1.08997 * 109.46940 * 299.99833 * 9 8 7 32 32 H 1.09006 * 109.47042 * 59.99749 * 9 8 7 33 33 H 1.08999 * 113.62046 * 254.52991 * 12 10 9 34 34 H 1.09002 * 113.61604 * 25.35219 * 12 10 9 35 35 H 0.96703 * 113.99658 * 180.02562 * 15 13 12 36 36 H 1.08997 * 113.61501 * 334.57158 * 16 10 9 37 37 H 1.09003 * 113.61249 * 105.46937 * 16 10 9 38 38 H 1.07998 * 120.00485 * 180.27260 * 17 7 6 39 39 H 1.08997 * 109.47362 * 305.02070 * 19 18 17 40 40 H 0.96700 * 113.99972 * 179.97438 * 20 19 18 41 41 H 1.48491 * 110.00227 * 300.00258 * 21 19 18 42 42 H 1.48509 * 109.99909 * 61.32386 * 21 19 18 43 43 H 1.08001 * 119.92341 * 179.97438 * 22 18 17 44 44 H 1.08005 * 119.99749 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9659 0.5792 -1.2201 6 6 5.3041 0.3982 -1.3812 7 6 5.7931 -0.1908 -2.5431 8 8 4.9340 -0.5862 -3.5205 9 6 5.5070 -1.1827 -4.6857 10 6 4.3940 -1.5600 -5.6654 11 1 3.6543 -0.7693 -5.7905 12 6 4.9118 -2.1350 -6.9943 13 6 3.7501 -3.1399 -6.9215 14 1 2.8333 -2.7823 -7.3900 15 8 4.1077 -4.4594 -7.3377 16 6 3.7779 -2.9427 -5.3949 17 6 7.1578 -0.3678 -2.7051 18 6 8.0295 0.0299 -1.7084 19 6 9.5130 -0.1696 -1.8833 20 8 9.9778 0.6382 -2.9665 21 14 10.3946 0.3235 -0.3180 22 6 7.5431 0.6098 -0.5515 23 6 6.1831 0.7941 -0.3859 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 3.9785 2.1766 0.0903 30 1 3.8508 0.5686 0.8427 31 1 6.1848 -0.4735 -5.1609 32 1 6.0593 -2.0784 -4.4012 33 1 4.8358 -1.4396 -7.8302 34 1 5.8960 -2.5969 -6.9162 35 1 3.3810 -5.0960 -7.2945 36 1 4.4508 -3.6271 -4.8783 37 1 2.7877 -2.8984 -4.9413 38 1 7.5403 -0.8206 -3.6079 39 1 9.7155 -1.2186 -2.0994 40 1 10.9265 0.5602 -3.1364 41 1 10.1264 1.7517 -0.0124 42 1 9.9433 -0.5308 0.8098 43 1 8.2272 0.9188 0.2250 44 1 5.8058 1.2470 0.5190 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_16901878_11354860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:01 Heat of formation + Delta-G solvation = -142.004252 kcal Electronic energy + Delta-G solvation = -26159.397866 eV Core-core repulsion = 22238.653144 eV Total energy + Delta-G solvation = -3920.744722 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.87249 -40.58298 -39.68458 -38.85127 -38.52629 -37.06773 -36.03957 -32.57176 -31.70494 -30.97091 -29.35073 -27.39262 -26.77738 -26.40428 -24.95274 -23.69908 -22.81385 -22.18096 -20.62955 -19.72347 -18.71339 -18.42950 -18.32282 -17.92946 -17.76777 -17.11244 -16.79079 -16.44370 -16.23376 -16.19081 -16.05734 -15.81031 -15.67905 -15.21647 -14.63239 -14.45686 -14.18409 -13.94416 -13.78443 -13.56159 -13.50517 -13.23766 -12.87918 -12.69580 -12.59993 -12.51994 -12.32749 -12.23270 -12.13240 -11.99538 -11.84701 -11.74591 -11.26821 -10.77828 -10.75489 -10.32528 -9.91740 -9.00701 -4.94137 0.03617 0.09926 1.29241 1.65180 1.95480 2.00597 2.02209 2.39317 2.71152 3.24765 3.35610 3.41847 3.51041 3.54605 3.65287 3.76062 3.81013 3.87961 3.90034 3.99098 4.06888 4.13706 4.17524 4.19948 4.25963 4.30977 4.37176 4.42185 4.44296 4.46918 4.49695 4.61713 4.64289 4.70969 4.75742 4.79633 4.85220 4.93131 4.94900 5.08471 5.21413 5.32281 5.43899 5.93846 6.11001 6.43248 6.84138 6.90412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.060 3.940 4 C 0.050 3.950 5 O -0.316 6.316 6 C 0.090 3.910 7 C 0.088 3.912 8 O -0.317 6.317 9 C 0.067 3.933 10 C -0.106 4.106 11 H 0.104 0.896 12 C -0.117 4.117 13 C 0.078 3.922 14 H 0.100 0.900 15 O -0.579 6.579 16 C -0.163 4.163 17 C -0.149 4.149 18 C -0.087 4.087 19 C -0.079 4.079 20 O -0.564 6.564 21 Si 0.778 3.222 22 C -0.135 4.135 23 C -0.167 4.167 24 H 0.047 0.953 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.395 0.605 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.151 0.849 39 H 0.093 0.907 40 H 0.404 0.596 41 H -0.293 1.293 42 H -0.288 1.288 43 H 0.128 0.872 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.360 0.554 0.647 1.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.016 4.016 4 C -0.025 4.025 5 O -0.230 6.230 6 C 0.045 3.955 7 C 0.042 3.958 8 O -0.232 6.232 9 C -0.008 4.008 10 C -0.124 4.124 11 H 0.123 0.877 12 C -0.155 4.155 13 C 0.019 3.981 14 H 0.117 0.883 15 O -0.388 6.388 16 C -0.201 4.201 17 C -0.167 4.167 18 C -0.087 4.087 19 C -0.188 4.188 20 O -0.374 6.374 21 Si 0.684 3.316 22 C -0.152 4.152 23 C -0.186 4.186 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.245 0.755 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.168 0.832 39 H 0.111 0.889 40 H 0.255 0.745 41 H -0.220 1.220 42 H -0.215 1.215 43 H 0.145 0.855 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.959 1.083 1.190 1.873 hybrid contribution -1.168 -0.126 0.105 1.179 sum -0.209 0.957 1.295 1.623 Atomic orbital electron populations 1.22907 0.79342 1.03702 1.01031 1.87921 1.21588 1.28519 1.95665 1.22726 0.90774 0.85323 1.02786 1.23183 0.94684 0.99158 0.85453 1.86216 1.18838 1.77455 1.40534 1.18463 0.83803 0.99816 0.93449 1.18505 0.89278 0.99183 0.88785 1.86160 1.34534 1.75213 1.27243 1.22980 0.96648 0.97467 0.83676 1.22284 0.97815 0.97671 0.94630 0.87749 1.23055 0.99160 0.96965 0.96292 1.23396 0.98398 0.83194 0.93119 0.88276 1.86475 1.42514 1.20517 1.89263 1.23763 1.01921 0.96420 0.98014 1.21062 0.90063 1.04403 1.01203 1.19440 0.95246 0.99850 0.94179 1.24842 0.92908 0.98914 1.02140 1.86445 1.31260 1.67447 1.52202 0.94398 0.87904 0.76472 0.72830 1.20785 0.95354 1.01155 0.97943 1.21205 0.92960 1.04735 0.99698 0.93423 0.89138 0.92386 0.92066 0.88216 0.88157 0.90690 0.90936 0.91400 0.89037 0.89212 0.75471 0.90034 0.90985 0.83181 0.88924 0.74501 1.22044 1.21543 0.85473 0.82237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 11.01 113.37 1.25 1.27 16 2 O -0.42 -3.08 10.67 -144.35 -1.54 -4.62 16 3 C 0.06 0.10 6.32 71.98 0.45 0.56 16 4 C 0.05 0.14 5.12 71.98 0.37 0.51 16 5 O -0.32 -3.56 9.89 -73.41 -0.73 -4.29 16 6 C 0.09 0.99 6.70 22.57 0.15 1.14 16 7 C 0.09 1.00 6.70 22.57 0.15 1.15 16 8 O -0.32 -3.59 9.92 -79.71 -0.79 -4.38 16 9 C 0.07 0.30 4.57 71.98 0.33 0.63 16 10 C -0.11 -0.22 4.00 -10.27 -0.04 -0.26 16 11 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 12 C -0.12 -0.03 7.48 31.12 0.23 0.20 16 13 C 0.08 0.04 5.21 31.18 0.16 0.20 16 14 H 0.10 -0.27 8.14 -2.39 -0.02 -0.29 16 15 O -0.58 -1.47 13.68 -148.98 -2.04 -3.51 16 16 C -0.16 -0.37 7.48 31.18 0.23 -0.14 16 17 C -0.15 -1.22 8.67 22.35 0.19 -1.02 16 18 C -0.09 -0.63 5.38 -19.86 -0.11 -0.74 16 19 C -0.08 -0.06 2.79 71.24 0.20 0.14 16 20 O -0.56 -0.32 12.81 -148.98 -1.91 -2.23 16 21 Si 0.78 -1.16 29.84 68.60 2.05 0.88 16 22 C -0.13 -1.01 8.66 22.27 0.19 -0.82 16 23 C -0.17 -1.18 9.04 22.35 0.20 -0.98 16 24 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 25 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 26 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 27 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 28 H 0.10 -0.43 8.14 -2.38 -0.02 -0.45 16 29 H 0.10 -0.22 7.66 -2.38 -0.02 -0.24 16 30 H 0.07 0.13 7.66 -2.39 -0.02 0.12 16 31 H 0.07 0.19 7.65 -2.39 -0.02 0.17 16 32 H 0.07 0.22 7.41 -2.38 -0.02 0.20 16 33 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 34 H 0.09 0.11 8.10 -2.39 -0.02 0.09 16 35 H 0.40 -2.16 9.12 -74.05 -0.68 -2.83 16 36 H 0.08 0.33 7.92 -2.39 -0.02 0.31 16 37 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.15 0.71 6.30 -2.91 -0.02 0.69 16 39 H 0.09 -0.30 7.96 -2.39 -0.02 -0.32 16 40 H 0.40 -4.16 8.74 -74.06 -0.65 -4.81 16 41 H -0.29 -1.59 7.04 99.48 0.70 -0.89 16 42 H -0.29 -1.14 7.11 99.48 0.71 -0.43 16 43 H 0.13 0.70 4.85 -2.91 -0.01 0.68 16 44 H 0.16 0.19 6.30 -2.91 -0.02 0.17 16 Total: 0.00 -22.89 363.04 -1.25 -24.14 By element: Atomic # 1 Polarization: -7.57 SS G_CDS: -0.27 Total: -7.84 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 3.97 Total: 1.83 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -7.00 Total: -19.02 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: 2.05 Total: 0.88 kcal Total: -22.89 -1.25 -24.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16901878_11354860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.859 kcal (2) G-P(sol) polarization free energy of solvation -22.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds