Wall clock time and date at job start Tue Mar 9 2021 14:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35904 * 116.99628 * 180.02562 * 3 2 1 5 5 C 1.38610 * 120.02387 * 179.97438 * 4 3 2 6 6 C 1.38661 * 119.88855 * 180.02562 * 5 4 3 7 7 O 1.35898 * 120.02492 * 179.97438 * 6 5 4 8 8 C 1.42894 * 117.00207 * 0.02562 * 7 6 5 9 9 C 1.53004 * 109.47462 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46774 * 305.00061 * 9 8 7 11 11 C 1.53000 * 109.47017 * 64.99475 * 9 8 7 12 12 C 1.52998 * 109.47131 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47036 * 299.99991 * 12 11 9 14 14 H 1.09000 * 109.47416 * 300.00132 * 13 12 11 15 15 O 1.42900 * 109.47105 * 179.97438 * 13 12 11 16 16 C 1.53000 * 109.47153 * 60.00023 * 13 12 11 17 17 C 1.52990 * 109.47457 * 184.99827 * 9 8 7 18 18 C 1.38746 * 119.94318 * 0.02562 * 6 5 4 19 19 C 1.50704 * 119.97002 * 179.97438 * 18 6 5 20 20 O 1.42902 * 109.46780 * 75.00641 * 19 18 6 21 21 Si 1.86301 * 109.47284 * 195.00157 * 19 18 6 22 22 C 1.38191 * 120.06007 * 0.02562 * 18 6 5 23 23 C 1.38156 * 120.10512 * 359.67029 * 22 18 6 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 29 29 H 1.08005 * 120.05919 * 0.03279 * 5 4 3 30 30 H 1.09004 * 109.46953 * 299.99863 * 8 7 6 31 31 H 1.09000 * 109.47782 * 59.99489 * 8 7 6 32 32 H 1.09001 * 109.47537 * 300.00332 * 11 9 8 33 33 H 1.09001 * 109.47219 * 60.00235 * 11 9 8 34 34 H 1.09002 * 109.46991 * 180.02562 * 12 11 9 35 35 H 1.08993 * 109.47571 * 59.99803 * 12 11 9 36 36 H 0.96701 * 113.99729 * 60.00492 * 15 13 12 37 37 H 1.08993 * 109.47323 * 180.02562 * 16 13 12 38 38 H 1.09000 * 109.46870 * 59.99775 * 16 13 12 39 39 H 1.09000 * 109.47319 * 299.99900 * 17 9 8 40 40 H 1.09001 * 109.47303 * 59.99492 * 17 9 8 41 41 H 1.08993 * 109.47418 * 315.00716 * 19 18 6 42 42 H 0.96698 * 114.00640 * 59.99776 * 20 19 18 43 43 H 1.48498 * 109.99898 * 58.68442 * 21 19 18 44 44 H 1.48494 * 110.00097 * 180.02562 * 21 19 18 45 45 H 1.07997 * 119.95090 * 179.97438 * 22 18 6 46 46 H 1.08002 * 119.97459 * 180.30130 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 3.8839 2.8060 -0.0011 6 6 5.2590 2.9845 -0.0022 7 8 5.7819 4.2388 -0.0033 8 6 4.8564 5.3275 -0.0027 9 6 5.6251 6.6505 -0.0034 10 1 6.3179 6.6685 0.8379 11 6 6.4075 6.7849 -1.3113 12 6 7.1767 8.1075 -1.3118 13 6 6.1909 9.2708 -1.1853 14 1 5.4980 9.2531 -2.0266 15 8 6.9093 10.5061 -1.1852 16 6 5.4085 9.1364 0.1226 17 6 4.6391 7.8134 0.1229 18 6 6.1005 1.8813 -0.0033 19 6 7.5951 2.0746 -0.0050 20 8 8.0242 2.4813 1.2959 21 14 8.4280 0.4716 -0.4607 22 6 5.5693 0.6056 -0.0038 23 6 4.1996 0.4252 0.0037 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.2272 3.6635 -0.0006 30 1 4.2286 5.2712 -0.8920 31 1 4.2305 5.2720 0.8880 32 1 7.1100 5.9564 -1.4014 33 1 5.7147 6.7668 -2.1527 34 1 7.7337 8.2035 -2.2439 35 1 7.8695 8.1253 -0.4706 36 1 7.4294 10.6587 -1.9860 37 1 4.7060 9.9648 0.2126 38 1 6.1014 9.1540 0.9639 39 1 3.9462 7.7953 -0.7184 40 1 4.0816 7.7176 1.0547 41 1 7.8614 2.8419 -0.7318 42 1 7.8197 1.8447 1.9945 43 1 7.9658 0.0215 -1.7983 44 1 9.9023 0.6488 -0.4654 45 1 6.2260 -0.2518 -0.0050 46 1 3.7868 -0.5728 0.0082 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_34806_16737256.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:19:16 Heat of formation + Delta-G solvation = -148.866747 kcal Electronic energy + Delta-G solvation = -26226.938980 eV Core-core repulsion = 22469.041252 eV Total energy + Delta-G solvation = -3757.897729 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.171 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.70059 -40.48141 -39.74345 -38.34615 -37.01783 -36.55815 -33.19893 -32.14109 -31.86658 -31.35623 -30.67552 -26.83968 -26.23125 -24.83525 -23.82999 -23.34668 -22.18072 -21.93949 -20.90031 -19.83438 -18.20864 -18.18805 -17.59943 -17.29294 -17.26622 -16.96180 -16.57288 -16.22117 -15.74882 -15.52594 -15.48972 -15.11045 -14.76758 -14.64873 -14.35921 -14.29873 -14.06443 -13.75103 -13.67807 -13.40792 -13.24990 -13.17266 -13.06101 -12.80980 -12.52364 -12.17798 -12.09831 -12.03184 -12.00107 -11.79670 -11.66602 -11.58609 -11.45741 -11.13133 -10.72276 -10.27201 -9.61735 -9.02045 -5.00226 0.25741 0.38883 1.37234 1.69026 2.00031 2.03696 2.23054 2.63647 3.15738 3.58461 3.62393 3.64185 3.68865 3.75125 3.86216 3.88477 3.95671 4.02369 4.04733 4.10687 4.15018 4.21253 4.25880 4.30430 4.34369 4.35806 4.42338 4.45017 4.46173 4.58769 4.67197 4.72377 4.76296 4.77770 4.92391 5.01024 5.01839 5.06353 5.09268 5.12893 5.12957 5.27988 5.29485 5.31548 5.40113 5.54941 6.26944 6.44447 6.70808 6.73500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.053 3.947 3 O -0.314 6.314 4 C 0.177 3.823 5 C -0.247 4.247 6 C 0.196 3.804 7 O -0.295 6.295 8 C 0.060 3.940 9 C -0.087 4.087 10 H 0.087 0.913 11 C -0.111 4.111 12 C -0.152 4.152 13 C 0.103 3.897 14 H 0.054 0.946 15 O -0.569 6.569 16 C -0.111 4.111 17 C -0.110 4.110 18 C -0.193 4.193 19 C -0.048 4.048 20 O -0.536 6.536 21 Si 0.677 3.323 22 C -0.035 4.035 23 C -0.243 4.243 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.137 0.863 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.379 0.621 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.374 0.626 43 H -0.257 1.257 44 H -0.254 1.254 45 H 0.137 0.863 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.964 -3.911 0.094 4.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.022 4.022 3 O -0.228 6.228 4 C 0.131 3.869 5 C -0.267 4.267 6 C 0.150 3.850 7 O -0.208 6.208 8 C -0.015 4.015 9 C -0.105 4.105 10 H 0.105 0.895 11 C -0.148 4.148 12 C -0.190 4.190 13 C 0.044 3.956 14 H 0.072 0.928 15 O -0.375 6.375 16 C -0.149 4.149 17 C -0.147 4.147 18 C -0.194 4.194 19 C -0.159 4.159 20 O -0.341 6.341 21 Si 0.579 3.421 22 C -0.053 4.053 23 C -0.262 4.262 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.155 0.845 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.226 0.774 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.221 0.779 43 H -0.182 1.182 44 H -0.179 1.179 45 H 0.154 0.846 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.478 -3.534 -0.232 4.323 hybrid contribution -0.274 0.215 -0.822 0.893 sum -2.751 -3.319 -1.054 4.438 Atomic orbital electron populations 1.21797 0.92419 1.03195 1.03688 1.22873 0.96128 0.81400 1.01759 1.86087 1.18769 1.29998 1.87904 1.18660 0.82431 0.93291 0.92505 1.20437 0.93938 0.96504 1.15805 1.18373 0.90100 0.84647 0.91925 1.86161 1.35529 1.11637 1.87425 1.22964 0.91836 0.84944 1.01765 1.21216 0.97796 0.91575 0.99922 0.89502 1.21506 0.99254 0.97391 0.96672 1.22276 0.98837 0.95069 1.02792 1.21847 0.92523 0.83139 0.98074 0.92767 1.86519 1.66334 1.39179 1.45453 1.21445 0.99130 0.97223 0.97059 1.21482 0.97413 0.92933 1.02911 1.19564 0.96207 0.91115 1.12537 1.24782 0.92242 1.09810 0.89036 1.86541 1.82011 1.49375 1.16184 0.95191 0.80094 0.81297 0.85503 1.20563 0.94545 0.95099 0.95058 1.21101 0.93818 0.98359 1.12931 0.90055 0.91386 0.91432 0.91603 0.91704 0.84495 0.91756 0.91537 0.90789 0.91853 0.91585 0.90870 0.77410 0.90830 0.90886 0.91307 0.90722 0.87206 0.77917 1.18201 1.17929 0.84589 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.31 10.28 37.16 0.38 0.69 16 2 C 0.05 -0.06 5.46 37.16 0.20 0.14 16 3 O -0.31 -0.58 10.14 -19.44 -0.20 -0.78 16 4 C 0.18 0.35 6.68 -39.24 -0.26 0.08 16 5 C -0.25 -0.54 8.97 -39.29 -0.35 -0.89 16 6 C 0.20 0.50 6.66 -39.24 -0.26 0.23 16 7 O -0.30 -0.75 9.00 -19.42 -0.17 -0.93 16 8 C 0.06 0.01 4.12 37.16 0.15 0.16 16 9 C -0.09 0.02 2.43 -90.62 -0.22 -0.20 16 10 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 11 C -0.11 0.00 5.10 -26.73 -0.14 -0.14 16 12 C -0.15 0.00 5.55 -26.73 -0.15 -0.14 16 13 C 0.10 0.04 3.47 -26.73 -0.09 -0.05 16 14 H 0.05 -0.01 8.14 -51.93 -0.42 -0.43 16 15 O -0.57 -0.92 13.32 -35.23 -0.47 -1.39 16 16 C -0.11 -0.03 5.57 -26.71 -0.15 -0.18 16 17 C -0.11 0.12 5.21 -26.71 -0.14 -0.02 16 18 C -0.19 -0.30 5.27 -104.45 -0.55 -0.85 16 19 C -0.05 -0.06 2.37 36.01 0.09 0.02 16 20 O -0.54 -0.97 12.88 -35.23 -0.45 -1.42 16 21 Si 0.68 -0.16 29.91 -169.99 -5.08 -5.24 16 22 C -0.04 0.00 8.65 -39.63 -0.34 -0.34 16 23 C -0.24 -0.09 9.04 -39.41 -0.36 -0.45 16 24 H 0.08 -0.28 8.14 -51.93 -0.42 -0.71 16 25 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 26 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 27 H 0.07 -0.15 7.65 -51.93 -0.40 -0.54 16 28 H 0.06 -0.13 7.67 -51.93 -0.40 -0.53 16 29 H 0.14 0.16 6.30 -52.48 -0.33 -0.17 16 30 H 0.06 -0.03 7.66 -51.93 -0.40 -0.43 16 31 H 0.07 -0.03 7.66 -51.93 -0.40 -0.43 16 32 H 0.07 0.09 7.82 -51.93 -0.41 -0.32 16 33 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 34 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 35 H 0.07 0.08 8.14 -51.93 -0.42 -0.35 16 36 H 0.38 -0.84 9.08 45.56 0.41 -0.43 16 37 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 38 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 39 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 40 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 41 H 0.11 0.28 7.82 -51.93 -0.41 -0.12 16 42 H 0.37 -0.83 8.70 45.56 0.40 -0.43 16 43 H -0.26 -0.55 7.11 56.52 0.40 -0.14 16 44 H -0.25 -0.76 7.11 56.52 0.40 -0.36 16 45 H 0.14 -0.38 5.12 -52.49 -0.27 -0.64 16 46 H 0.13 -0.24 6.29 -52.49 -0.33 -0.57 16 LS Contribution 363.77 15.07 5.48 5.48 Total: 0.00 -7.08 363.77 -9.88 -16.96 By element: Atomic # 1 Polarization: -3.96 SS G_CDS: -6.79 Total: -10.75 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.19 Total: -1.93 kcal Atomic # 8 Polarization: -3.22 SS G_CDS: -1.29 Total: -4.52 kcal Atomic # 14 Polarization: -0.16 SS G_CDS: -5.08 Total: -5.24 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -7.08 -9.88 -16.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34806_16737256.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.908 kcal (2) G-P(sol) polarization free energy of solvation -7.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds