Wall clock time and date at job start Tue Mar 9 2021 14:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.46970 * 2 1 4 4 C 1.35995 * 117.00165 * 179.97438 * 3 2 1 5 5 C 1.39151 * 120.07408 * 180.02562 * 4 3 2 6 6 O 1.35991 * 120.07378 * 359.97438 * 5 4 3 7 7 C 1.42903 * 117.00331 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47551 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.46993 * 305.00650 * 8 7 6 10 10 C 1.52998 * 109.46966 * 65.00305 * 8 7 6 11 11 C 1.53007 * 109.47267 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46730 * 299.99755 * 11 10 8 13 13 H 1.09003 * 109.47541 * 300.00070 * 12 11 10 14 14 O 1.42898 * 109.47454 * 179.97438 * 12 11 10 15 15 C 1.53007 * 109.47131 * 60.00175 * 12 11 10 16 16 C 1.52999 * 109.47204 * 185.00166 * 8 7 6 17 17 C 1.38567 * 119.85390 * 179.97438 * 5 4 3 18 18 C 1.38245 * 119.99870 * 359.72061 * 17 5 4 19 19 C 1.38255 * 120.14566 * 0.55853 * 18 17 5 20 20 C 1.50699 * 119.92682 * 179.72161 * 19 18 17 21 21 O 1.42901 * 109.46830 * 119.72111 * 20 19 18 22 22 Si 1.86298 * 109.46950 * 359.72548 * 20 19 18 23 23 C 1.38241 * 120.14388 * 359.44082 * 19 18 17 24 24 H 1.09004 * 109.47087 * 299.99518 * 1 2 3 25 25 H 1.08995 * 109.47552 * 60.00111 * 1 2 3 26 26 H 1.09006 * 109.47282 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46978 * 240.00093 * 2 1 3 28 28 H 1.09002 * 109.47185 * 119.99804 * 2 1 3 29 29 H 1.09001 * 109.47234 * 300.01041 * 7 6 5 30 30 H 1.08999 * 109.46599 * 60.00357 * 7 6 5 31 31 H 1.09001 * 109.47079 * 300.00077 * 10 8 7 32 32 H 1.08997 * 109.47573 * 59.99970 * 10 8 7 33 33 H 1.08999 * 109.46995 * 180.02562 * 11 10 8 34 34 H 1.08997 * 109.47172 * 59.99327 * 11 10 8 35 35 H 0.96705 * 113.99256 * 59.99419 * 14 12 11 36 36 H 1.09001 * 109.47165 * 179.97438 * 15 12 11 37 37 H 1.08994 * 109.47114 * 59.99772 * 15 12 11 38 38 H 1.08994 * 109.47307 * 300.00144 * 16 8 7 39 39 H 1.08999 * 109.46977 * 60.00563 * 16 8 7 40 40 H 1.08001 * 120.00233 * 179.97438 * 17 5 4 41 41 H 1.08004 * 119.92701 * 180.29323 * 18 17 5 42 42 H 1.08991 * 109.47351 * 239.72258 * 20 19 18 43 43 H 0.96708 * 114.00246 * 299.99864 * 21 20 19 44 44 H 1.48506 * 109.99834 * 180.02562 * 22 20 19 45 45 H 1.48502 * 110.00011 * 301.31529 * 22 20 19 46 46 H 1.07998 * 119.99949 * 180.30308 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 0.0005 5 6 3.8879 2.8107 0.0011 6 8 3.0623 3.8913 0.0006 7 6 3.6800 5.1799 0.0018 8 6 2.5998 6.2634 0.0017 9 1 1.9264 6.1050 -0.8407 10 6 1.8072 6.1934 1.3084 11 6 0.7265 7.2766 1.3081 12 6 1.3837 8.6526 1.1833 13 1 2.0571 8.8114 2.0257 14 8 0.3745 9.6642 1.1824 15 6 2.1764 8.7226 -0.1235 16 6 3.2575 7.6392 -0.1228 17 6 5.2623 2.9871 0.0022 18 6 6.1003 1.8875 0.0086 19 6 5.5703 0.6106 0.0022 20 6 6.4883 -0.5844 0.0028 21 8 6.2433 -1.3726 1.1693 22 14 8.2595 -0.0068 0.0044 23 6 4.2000 0.4277 0.0011 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.2996 5.2850 0.8924 30 1 4.3013 5.2857 -0.8875 31 1 1.3386 5.2133 1.3971 32 1 2.4805 6.3518 2.1508 33 1 0.1621 7.2270 2.2392 34 1 0.0532 7.1178 0.4657 35 1 -0.1685 9.6787 1.9825 36 1 2.6443 9.7030 -0.2126 37 1 1.5031 8.5638 -0.9658 38 1 3.9309 7.7976 0.7195 39 1 3.8222 7.6891 -1.0538 40 1 5.6790 3.9835 0.0022 41 1 7.1713 2.0264 0.0142 42 1 6.3030 -1.1855 -0.8873 43 1 6.3888 -0.9006 2.0007 44 1 9.1750 -1.1761 0.0044 45 1 8.5186 0.8403 -1.1874 46 1 3.7885 -0.5708 0.0011 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_34834_16737256.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:31:01 Heat of formation + Delta-G solvation = -144.753512 kcal Electronic energy + Delta-G solvation = -26103.076387 eV Core-core repulsion = 22345.357021 eV Total energy + Delta-G solvation = -3757.719366 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.171 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.73902 -40.36175 -39.37026 -38.91303 -37.13000 -36.55039 -33.03964 -32.08440 -31.81627 -31.46196 -30.61998 -27.21721 -26.01054 -24.90072 -23.77400 -22.99864 -22.59699 -21.80579 -20.87960 -19.60203 -18.47253 -18.18539 -18.08359 -17.35576 -17.20341 -16.80320 -16.27793 -16.11846 -15.95181 -15.70432 -15.47468 -15.31636 -14.81854 -14.64638 -14.38804 -14.15567 -14.01151 -13.65915 -13.55921 -13.45610 -13.24634 -13.17153 -13.00703 -12.53586 -12.51691 -12.36545 -12.13560 -12.08087 -11.89296 -11.76018 -11.71308 -11.54779 -11.53150 -11.08289 -10.71515 -10.45352 -9.78349 -8.86944 -4.99195 0.17950 0.28074 1.31799 1.64498 1.96751 2.14020 2.18708 2.57054 3.23518 3.47798 3.62727 3.65965 3.69675 3.74262 3.88453 3.91308 3.97592 4.03880 4.10591 4.15718 4.22265 4.27700 4.29273 4.33312 4.37668 4.38639 4.47800 4.48860 4.54510 4.58083 4.65854 4.79155 4.83078 4.86636 4.98045 5.00531 5.06823 5.09360 5.13984 5.15840 5.16977 5.19630 5.33792 5.37072 5.43976 5.61626 6.08885 6.56976 6.75866 6.85516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.327 6.327 4 C 0.079 3.921 5 C 0.091 3.909 6 O -0.321 6.321 7 C 0.057 3.943 8 C -0.083 4.083 9 H 0.067 0.933 10 C -0.107 4.107 11 C -0.147 4.147 12 C 0.102 3.898 13 H 0.066 0.934 14 O -0.591 6.591 15 C -0.114 4.114 16 C -0.102 4.102 17 C -0.166 4.166 18 C -0.112 4.112 19 C -0.121 4.121 20 C -0.073 4.073 21 O -0.556 6.556 22 Si 0.783 3.217 23 C -0.153 4.153 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.393 0.607 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.163 0.837 41 H 0.154 0.846 42 H 0.104 0.896 43 H 0.395 0.605 44 H -0.300 1.300 45 H -0.282 1.282 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.611 1.346 3.361 4.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 O -0.242 6.242 4 C 0.034 3.966 5 C 0.045 3.955 6 O -0.236 6.236 7 C -0.017 4.017 8 C -0.102 4.102 9 H 0.086 0.914 10 C -0.144 4.144 11 C -0.185 4.185 12 C 0.043 3.957 13 H 0.084 0.916 14 O -0.399 6.399 15 C -0.152 4.152 16 C -0.139 4.139 17 C -0.184 4.184 18 C -0.130 4.130 19 C -0.122 4.122 20 C -0.183 4.183 21 O -0.364 6.364 22 Si 0.688 3.312 23 C -0.172 4.172 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.242 0.758 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.181 0.819 41 H 0.171 0.829 42 H 0.122 0.878 43 H 0.245 0.755 44 H -0.229 1.229 45 H -0.209 1.209 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.097 1.182 1.923 3.832 hybrid contribution -0.916 -0.669 -0.009 1.134 sum 2.181 0.513 1.913 2.946 Atomic orbital electron populations 1.21787 0.91771 1.04001 1.03057 1.22985 0.96745 0.81015 1.01898 1.86154 1.18387 1.30586 1.89074 1.18549 0.83397 0.91870 1.02787 1.18528 0.89902 0.85269 1.01799 1.86148 1.35011 1.13619 1.88795 1.23093 0.96255 0.79562 1.02803 1.21166 0.96552 0.93469 0.99019 0.91419 1.21453 0.97412 0.98283 0.97265 1.22223 0.98604 0.95212 1.02468 1.21919 0.89086 0.86197 0.98473 0.91582 1.86482 1.50169 1.56388 1.46909 1.21484 0.97397 0.99688 0.96601 1.21437 0.97268 0.91180 1.04020 1.21316 0.90199 1.01606 1.05311 1.20970 1.00330 0.90940 1.00748 1.20154 0.93769 0.95437 1.02833 1.25203 1.09123 0.92901 0.91057 1.86457 1.92503 1.41130 1.16334 0.93633 0.71827 0.79128 0.86575 1.20994 0.93535 0.97570 1.05126 0.91904 0.92138 0.88367 0.91678 0.91262 0.90132 0.90677 0.92434 0.90713 0.90828 0.92526 0.75758 0.90952 0.92379 0.89790 0.89841 0.81937 0.82927 0.87811 0.75484 1.22870 1.20908 0.84308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.01 10.28 71.98 0.74 0.75 16 2 C 0.05 0.12 5.46 71.98 0.39 0.51 16 3 O -0.33 -2.93 9.92 -79.63 -0.79 -3.72 16 4 C 0.08 0.59 6.70 22.57 0.15 0.74 16 5 C 0.09 0.51 6.70 22.57 0.15 0.66 16 6 O -0.32 -1.95 9.46 -79.58 -0.75 -2.70 16 7 C 0.06 -0.09 4.12 71.98 0.30 0.21 16 8 C -0.08 0.11 2.43 -10.80 -0.03 0.08 16 9 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 10 C -0.11 0.05 5.10 30.60 0.16 0.20 16 11 C -0.15 0.04 5.55 30.60 0.17 0.21 16 12 C 0.10 -0.02 3.47 30.60 0.11 0.09 16 13 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 14 O -0.59 -1.61 13.32 -148.98 -1.98 -3.59 16 15 C -0.11 0.04 5.57 30.61 0.17 0.21 16 16 C -0.10 0.43 5.21 30.61 0.16 0.59 16 17 C -0.17 0.00 9.04 22.35 0.20 0.21 16 18 C -0.11 0.13 8.66 22.28 0.19 0.33 16 19 C -0.12 -0.15 5.39 -19.86 -0.11 -0.25 16 20 C -0.07 0.02 2.82 71.24 0.20 0.22 16 21 O -0.56 -0.14 12.77 -148.98 -1.90 -2.05 16 22 Si 0.78 -2.24 29.78 68.60 2.04 -0.19 16 23 C -0.15 -0.65 8.60 22.35 0.19 -0.45 16 24 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 25 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.10 -0.41 8.14 -2.38 -0.02 -0.43 16 27 H 0.06 0.06 7.66 -2.39 -0.02 0.04 16 28 H 0.07 0.04 7.66 -2.39 -0.02 0.02 16 29 H 0.08 -0.40 7.66 -2.39 -0.02 -0.42 16 30 H 0.08 -0.30 7.66 -2.39 -0.02 -0.32 16 31 H 0.06 0.20 7.82 -2.39 -0.02 0.18 16 32 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.39 -1.99 9.08 -74.05 -0.67 -2.66 16 36 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 40 H 0.16 -0.93 6.30 -2.91 -0.02 -0.95 16 41 H 0.15 -0.97 4.87 -2.91 -0.01 -0.99 16 42 H 0.10 0.11 7.96 -2.39 -0.02 0.10 16 43 H 0.40 -3.04 8.70 -74.05 -0.64 -3.69 16 44 H -0.30 -1.44 7.11 99.48 0.71 -0.74 16 45 H -0.28 -0.37 7.11 99.48 0.71 0.33 16 46 H 0.14 0.41 6.30 -2.91 -0.02 0.39 16 Total: 0.00 -17.73 363.94 -0.53 -18.27 By element: Atomic # 1 Polarization: -10.02 SS G_CDS: -0.30 Total: -10.31 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 3.15 Total: 4.30 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -5.43 Total: -12.06 kcal Atomic # 14 Polarization: -2.24 SS G_CDS: 2.04 Total: -0.19 kcal Total: -17.73 -0.53 -18.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34834_16737256.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.487 kcal (2) G-P(sol) polarization free energy of solvation -17.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds