Wall clock time and date at job start Tue Mar 9 2021 14:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.47515 * 2 1 4 4 C 1.35993 * 116.99994 * 179.97438 * 3 2 1 5 5 C 1.39151 * 120.06912 * 180.02562 * 4 3 2 6 6 O 1.35993 * 120.07506 * 0.02562 * 5 4 3 7 7 C 1.42899 * 116.99903 * 179.72435 * 6 5 4 8 8 C 1.53004 * 109.46971 * 179.97438 * 7 6 5 9 9 H 1.08998 * 112.84447 * 43.81346 * 8 7 6 10 10 C 1.53785 * 113.61259 * 175.00021 * 8 7 6 11 11 C 1.53781 * 87.08072 * 89.12037 * 10 8 7 12 12 O 1.42898 * 113.61210 * 270.88217 * 11 10 8 13 13 C 1.42899 * 114.00176 * 294.90478 * 12 11 10 14 14 C 1.52995 * 113.61364 * 139.97782 * 11 10 8 15 15 F 1.39901 * 109.47034 * 54.63196 * 14 11 10 16 16 F 1.39904 * 109.47035 * 174.62513 * 14 11 10 17 17 F 1.39898 * 109.47197 * 294.62776 * 14 11 10 18 18 C 1.53772 * 113.61719 * 272.49852 * 8 7 6 19 19 C 1.38572 * 119.85069 * 179.72809 * 5 4 3 20 20 C 1.38240 * 120.00060 * 0.27811 * 19 5 4 21 21 C 1.38251 * 120.14527 * 359.97438 * 20 19 5 22 22 C 1.50702 * 119.92527 * 180.02562 * 21 20 19 23 23 O 1.42902 * 109.46796 * 120.00215 * 22 21 20 24 24 Si 1.86298 * 109.47247 * 0.02562 * 22 21 20 25 25 C 1.38241 * 120.14962 * 0.02562 * 21 20 19 26 26 H 1.08999 * 109.47333 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46781 * 299.99632 * 1 2 3 28 28 H 1.08998 * 109.46645 * 59.99529 * 1 2 3 29 29 H 1.09006 * 109.47110 * 240.00010 * 2 1 3 30 30 H 1.08996 * 109.47490 * 120.00800 * 2 1 3 31 31 H 1.09008 * 109.47141 * 60.00488 * 7 6 5 32 32 H 1.08999 * 109.47669 * 300.00584 * 7 6 5 33 33 H 1.08998 * 113.61556 * 334.56841 * 10 8 7 34 34 H 1.09000 * 113.69122 * 203.67979 * 10 8 7 35 35 H 1.09001 * 109.46934 * 302.58094 * 13 12 11 36 36 H 1.09002 * 109.46811 * 62.58405 * 13 12 11 37 37 H 1.09005 * 109.46893 * 182.58140 * 13 12 11 38 38 H 1.09006 * 113.61577 * 156.33823 * 18 8 7 39 39 H 1.09003 * 113.61352 * 25.43613 * 18 8 7 40 40 H 1.07998 * 119.99670 * 180.25437 * 19 5 4 41 41 H 1.07997 * 119.92564 * 179.97438 * 20 19 5 42 42 H 1.08997 * 109.47048 * 239.99951 * 22 21 20 43 43 H 0.96699 * 114.00026 * 299.99946 * 23 22 21 44 44 H 1.48495 * 110.00235 * 180.02562 * 24 22 21 45 45 H 1.48507 * 109.99899 * 301.31725 * 24 22 21 46 46 H 1.07999 * 120.00539 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3547 1.5254 0.0005 5 6 3.8882 2.8105 0.0011 6 8 3.0625 3.8912 0.0017 7 6 3.6804 5.1796 0.0084 8 6 2.6002 6.2632 0.0073 9 1 1.7853 6.0490 0.6986 10 6 3.1590 7.6901 0.1370 11 6 3.2536 7.7082 -1.3978 12 8 4.4966 7.2140 -1.9005 13 6 5.6257 8.0167 -1.5500 14 6 2.8485 9.0454 -2.0211 15 9 3.6037 10.0745 -1.4487 16 9 3.0822 9.0070 -3.4000 17 9 1.4892 9.2773 -1.7847 18 6 2.1277 6.6607 -1.4010 19 6 5.2626 2.9868 0.0074 20 6 6.1005 1.8872 0.0072 21 6 5.5704 0.6104 0.0014 22 6 6.4884 -0.5848 0.0018 23 8 6.2393 -1.3762 1.1653 24 14 8.2596 -0.0074 0.0116 25 6 4.2001 0.4275 -0.0049 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 4.3042 5.2881 -0.8790 32 1 4.2976 5.2821 0.9009 33 1 4.1276 7.7362 0.6348 34 1 2.4422 8.4063 0.5387 35 1 5.4736 9.0344 -1.9096 36 1 5.7413 8.0277 -0.4662 37 1 6.5235 7.6002 -2.0069 38 1 1.1279 7.0945 -1.4199 39 1 2.2637 5.8757 -2.1449 40 1 5.6792 3.9832 0.0120 41 1 7.1715 2.0260 0.0117 42 1 6.3059 -1.1834 -0.8906 43 1 6.3820 -0.9065 1.9984 44 1 9.1750 -1.1766 0.0115 45 1 8.5231 0.8434 -1.1767 46 1 3.7885 -0.5710 -0.0099 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_34834_17321602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:44:34 Heat of formation + Delta-G solvation = -233.130515 kcal Electronic energy + Delta-G solvation = -34222.917938 eV Core-core repulsion = 29053.004331 eV Total energy + Delta-G solvation = -5169.913607 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.26456 -48.79817 -48.73469 -41.86640 -41.27459 -39.46899 -38.91050 -37.22767 -36.77079 -32.96980 -31.78266 -30.99418 -30.26245 -28.18831 -27.56853 -26.76846 -26.17871 -24.97764 -23.49288 -22.76802 -22.25010 -20.60793 -19.90581 -19.56677 -19.45463 -19.23497 -18.42711 -18.04949 -17.36910 -17.21600 -17.09656 -16.57631 -16.43749 -16.15474 -16.01659 -15.71416 -15.68659 -15.65449 -15.57630 -15.35165 -15.18113 -14.95505 -14.90301 -14.67279 -14.41443 -14.28075 -14.09754 -13.82551 -13.62140 -13.48498 -13.40981 -13.18192 -12.88428 -12.74202 -12.53964 -12.36792 -12.30908 -12.07986 -11.89274 -11.75227 -11.73308 -11.68111 -11.55251 -10.78697 -10.44098 -9.76492 -8.85164 -4.98644 0.19708 0.29900 1.32761 1.53032 1.65394 1.97651 2.04536 2.11621 2.20601 2.56171 2.58837 2.63123 2.90250 3.31679 3.39334 3.48738 3.50478 3.63959 3.72493 3.91373 3.93552 4.00446 4.07084 4.24493 4.27076 4.29210 4.30331 4.34390 4.34733 4.41180 4.48812 4.50607 4.53385 4.62024 4.69371 4.72444 4.81692 4.82167 4.84667 4.89770 5.01261 5.05993 5.16989 5.19971 5.38648 5.62754 5.73155 6.09586 6.57726 6.77335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.326 6.326 4 C 0.081 3.919 5 C 0.092 3.908 6 O -0.320 6.320 7 C 0.065 3.935 8 C -0.093 4.093 9 H 0.109 0.891 10 C -0.130 4.130 11 C 0.038 3.962 12 O -0.346 6.346 13 C 0.002 3.998 14 C 0.432 3.568 15 F -0.183 7.183 16 F -0.189 7.189 17 F -0.177 7.177 18 C -0.117 4.117 19 C -0.164 4.164 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.073 4.073 23 O -0.556 6.556 24 Si 0.782 3.218 25 C -0.154 4.154 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.161 0.839 41 H 0.153 0.847 42 H 0.104 0.896 43 H 0.395 0.605 44 H -0.300 1.300 45 H -0.283 1.283 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.349 0.996 4.849 5.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.241 6.241 4 C 0.035 3.965 5 C 0.046 3.954 6 O -0.234 6.234 7 C -0.009 4.009 8 C -0.112 4.112 9 H 0.127 0.873 10 C -0.168 4.168 11 C -0.004 4.004 12 O -0.264 6.264 13 C -0.093 4.093 14 C 0.378 3.622 15 F -0.164 7.164 16 F -0.170 7.170 17 F -0.159 7.159 18 C -0.154 4.154 19 C -0.183 4.183 20 C -0.130 4.130 21 C -0.122 4.122 22 C -0.183 4.183 23 O -0.364 6.364 24 Si 0.688 3.312 25 C -0.172 4.172 26 H 0.115 0.885 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.103 0.897 40 H 0.178 0.822 41 H 0.170 0.830 42 H 0.122 0.878 43 H 0.245 0.755 44 H -0.229 1.229 45 H -0.210 1.210 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.604 0.578 3.860 4.692 hybrid contribution -0.476 0.230 -0.814 0.971 sum 2.127 0.808 3.046 3.802 Atomic orbital electron populations 1.21785 0.91722 1.03972 1.03131 1.22988 0.96779 0.81013 1.01879 1.86152 1.18299 1.30572 1.89048 1.18527 0.83435 0.91789 1.02700 1.18487 0.89834 0.85175 1.01870 1.86108 1.34942 1.13485 1.88869 1.22908 0.95464 0.79183 1.03353 1.22016 0.98907 0.92743 0.97500 0.87268 1.23614 1.05344 0.96929 0.90873 1.24145 0.89978 0.89440 0.96875 1.88079 1.13304 1.49153 1.75820 1.23322 0.88122 0.95458 1.02385 1.21545 0.75112 0.88830 0.76751 1.93178 1.75836 1.62978 1.84444 1.93187 1.94199 1.96811 1.32849 1.93170 1.33188 1.95357 1.94151 1.23320 0.96533 0.96664 0.98844 1.21288 0.90262 1.01498 1.05248 1.20955 1.00304 0.90949 1.00811 1.20146 0.93795 0.95393 1.02818 1.25195 1.09077 0.92867 0.91124 1.86456 1.92489 1.41086 1.16369 0.93654 0.71868 0.79073 0.86602 1.20994 0.93511 0.97595 1.05134 0.88460 0.91804 0.92078 0.91740 0.91258 0.90101 0.89708 0.87031 0.85967 0.93754 0.90687 0.86903 0.86039 0.89664 0.82151 0.82993 0.87823 0.75479 1.22861 1.20969 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.10 10.28 71.98 0.74 0.84 16 2 C 0.05 0.09 5.46 71.98 0.39 0.49 16 3 O -0.33 -2.71 9.92 -79.61 -0.79 -3.50 16 4 C 0.08 0.56 6.70 22.57 0.15 0.71 16 5 C 0.09 0.49 6.70 22.57 0.15 0.64 16 6 O -0.32 -1.71 9.92 -79.61 -0.79 -2.50 16 7 C 0.07 -0.13 4.33 71.98 0.31 0.18 16 8 C -0.09 0.34 4.20 -10.27 -0.04 0.30 16 9 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16 10 C -0.13 0.82 6.52 31.12 0.20 1.02 16 11 C 0.04 -0.05 0.85 -10.27 -0.01 -0.06 16 12 O -0.35 0.12 8.35 -148.98 -1.24 -1.12 16 13 C 0.00 -0.01 10.44 113.37 1.18 1.17 16 14 C 0.43 1.03 2.52 71.98 0.18 1.21 16 15 F -0.18 -0.42 15.26 44.97 0.69 0.26 16 16 F -0.19 -1.27 17.09 44.97 0.77 -0.50 16 17 F -0.18 -0.49 15.82 44.97 0.71 0.22 16 18 C -0.12 0.16 6.89 31.12 0.21 0.37 16 19 C -0.16 0.01 9.04 22.35 0.20 0.21 16 20 C -0.11 0.14 8.66 22.27 0.19 0.33 16 21 C -0.12 -0.13 5.39 -19.86 -0.11 -0.23 16 22 C -0.07 0.03 2.82 71.24 0.20 0.23 16 23 O -0.56 -0.04 12.76 -148.98 -1.90 -1.94 16 24 Si 0.78 -2.26 29.78 68.60 2.04 -0.22 16 25 C -0.15 -0.60 8.60 22.35 0.19 -0.41 16 26 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.06 0.04 7.65 -2.38 -0.02 0.02 16 30 H 0.07 0.01 7.67 -2.39 -0.02 -0.01 16 31 H 0.08 -0.13 5.64 -2.38 -0.01 -0.14 16 32 H 0.08 -0.50 7.66 -2.39 -0.02 -0.52 16 33 H 0.11 -1.06 6.69 -2.39 -0.02 -1.08 16 34 H 0.12 -0.97 8.07 -2.39 -0.02 -0.99 16 35 H 0.04 -0.11 6.26 -2.39 -0.01 -0.13 16 36 H 0.07 -0.67 6.75 -2.39 -0.02 -0.69 16 37 H 0.11 -0.83 8.14 -2.38 -0.02 -0.85 16 38 H 0.12 -0.35 7.00 -2.38 -0.02 -0.36 16 39 H 0.08 0.12 8.10 -2.39 -0.02 0.10 16 40 H 0.16 -0.86 6.30 -2.91 -0.02 -0.88 16 41 H 0.15 -0.96 4.87 -2.91 -0.01 -0.98 16 42 H 0.10 0.11 7.96 -2.39 -0.02 0.09 16 43 H 0.40 -3.14 8.70 -74.06 -0.64 -3.78 16 44 H -0.30 -1.42 7.11 99.48 0.71 -0.72 16 45 H -0.28 -0.40 7.11 99.48 0.71 0.31 16 46 H 0.14 0.36 6.30 -2.91 -0.02 0.35 16 Total: 0.00 -17.52 378.84 4.07 -13.45 By element: Atomic # 1 Polarization: -11.59 SS G_CDS: 0.43 Total: -11.16 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 4.16 Total: 7.00 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -4.73 Total: -9.05 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 2.17 Total: -0.01 kcal Atomic # 14 Polarization: -2.26 SS G_CDS: 2.04 Total: -0.22 kcal Total: -17.52 4.07 -13.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34834_17321602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -219.685 kcal (2) G-P(sol) polarization free energy of solvation -17.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds