Wall clock time and date at job start Tue Mar 9 2021 14:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35998 * 117.00068 * 2 1 4 4 C 1.39152 * 120.07347 * 180.02562 * 3 2 1 5 5 O 1.35998 * 120.07124 * 0.02562 * 4 3 2 6 6 C 1.42904 * 116.99852 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47002 * 179.97438 * 6 5 4 8 8 H 1.09002 * 112.90771 * 316.24756 * 7 6 5 9 9 C 1.53779 * 113.61529 * 87.50160 * 7 6 5 10 10 C 1.53779 * 87.08402 * 139.98073 * 9 7 6 11 11 H 1.08998 * 113.69354 * 89.12517 * 10 9 7 12 12 O 1.42901 * 113.61423 * 220.02249 * 10 9 7 13 13 C 1.53784 * 113.61233 * 184.99747 * 7 6 5 14 14 C 1.38560 * 119.85126 * 180.30198 * 4 3 2 15 15 C 1.38241 * 120.00049 * 359.46055 * 14 4 3 16 16 C 1.50703 * 119.92535 * 180.25608 * 15 14 4 17 17 O 1.42892 * 109.47104 * 65.26081 * 16 15 14 18 18 Si 1.86303 * 109.47017 * 185.26030 * 16 15 14 19 19 C 1.38246 * 120.14735 * 0.51928 * 15 14 4 20 20 C 1.38248 * 120.14642 * 359.76188 * 19 15 14 21 21 H 1.09002 * 109.47031 * 299.99638 * 1 2 3 22 22 H 1.08998 * 109.47285 * 59.99704 * 1 2 3 23 23 H 1.09000 * 109.47000 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46883 * 59.99670 * 6 5 4 25 25 H 1.09001 * 109.46611 * 300.00094 * 6 5 4 26 26 H 1.09006 * 113.61307 * 25.43275 * 9 7 6 27 27 H 1.09007 * 113.61642 * 254.53032 * 9 7 6 28 28 H 0.96703 * 113.99623 * 277.49399 * 12 10 9 29 29 H 1.09004 * 113.61451 * 105.47254 * 13 7 6 30 30 H 1.08994 * 113.61477 * 334.56556 * 13 7 6 31 31 H 1.08002 * 119.99505 * 179.70328 * 14 4 3 32 32 H 1.09000 * 109.47262 * 305.25860 * 16 15 14 33 33 H 0.96704 * 114.00372 * 59.99689 * 17 16 15 34 34 H 1.48498 * 109.99976 * 58.67996 * 18 16 15 35 35 H 1.48498 * 110.00106 * 180.02562 * 18 16 15 36 36 H 1.07998 * 119.92974 * 179.73824 * 19 15 14 37 37 H 1.07993 * 120.00037 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1796 0.1476 -0.0016 6 6 5.6004 0.3006 -0.0015 7 6 6.2618 -1.0790 -0.0021 8 1 5.7913 -1.7754 0.6919 9 6 6.4728 -1.6604 -1.4101 10 6 7.8361 -2.1673 -0.9110 11 1 7.7975 -3.1613 -0.4654 12 8 8.8845 -2.0305 -1.8724 13 6 7.7939 -1.0276 0.1206 14 6 4.0603 2.5233 0.0058 15 6 3.3029 3.6798 0.0014 16 6 3.9837 5.0243 0.0024 17 8 4.7067 5.1931 -1.2185 18 14 2.7032 6.3686 0.1567 19 6 1.9225 3.6057 0.0014 20 6 1.2932 2.3748 0.0010 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 5.9066 0.8496 0.8889 25 1 5.9065 0.8512 -0.8911 26 1 6.5476 -0.9016 -2.1891 27 1 5.7752 -2.4594 -1.6616 28 1 8.9162 -2.7444 -2.5240 29 1 8.1630 -1.3158 1.1050 30 1 8.2298 -0.0959 -0.2399 31 1 5.1386 2.5839 0.0102 32 1 4.6738 5.0815 0.8443 33 1 4.1546 5.1534 -2.0114 34 1 1.9230 6.1859 1.4070 35 1 3.3617 7.6996 0.1584 36 1 1.3342 4.5115 0.0022 37 1 0.2147 2.3196 0.0015 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_34849_11354860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:58:17 Heat of formation + Delta-G solvation = -97.979104 kcal Electronic energy + Delta-G solvation = -20441.663165 eV Core-core repulsion = 17152.584947 eV Total energy + Delta-G solvation = -3289.078218 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 267.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.68175 -40.50209 -39.25408 -38.77879 -36.92843 -35.99259 -31.90822 -31.43285 -29.24465 -28.54293 -26.76857 -26.15107 -24.26031 -22.75933 -22.34880 -20.61739 -19.49432 -18.61381 -18.39964 -17.97782 -17.23169 -17.12647 -16.53726 -16.21071 -16.09408 -15.88878 -15.79651 -15.46756 -14.85286 -14.48330 -14.47033 -13.91357 -13.56555 -13.48379 -13.27499 -13.10466 -12.68370 -12.38622 -12.30912 -12.25685 -12.06896 -11.97901 -11.71205 -11.70783 -11.24361 -10.77452 -10.44142 -9.74441 -8.80271 -5.04277 0.22873 0.33579 1.28639 1.63300 1.96483 2.12931 2.29091 2.61636 3.21311 3.42479 3.45357 3.53336 3.65468 3.72937 3.80290 3.88072 3.93508 4.11523 4.18180 4.22298 4.23163 4.28552 4.36614 4.42108 4.50710 4.57679 4.61208 4.67371 4.74122 4.74583 4.94609 5.03926 5.09408 5.16989 5.33346 5.41045 5.61449 6.08973 6.56565 6.59955 6.68365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.105 3.895 4 C 0.104 3.896 5 O -0.301 6.301 6 C 0.070 3.930 7 C -0.108 4.108 8 H 0.106 0.894 9 C -0.163 4.163 10 C 0.076 3.924 11 H 0.085 0.915 12 O -0.560 6.560 13 C -0.120 4.120 14 C -0.148 4.148 15 C -0.117 4.117 16 C -0.065 4.065 17 O -0.540 6.540 18 Si 0.688 3.312 19 C -0.113 4.113 20 C -0.168 4.168 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.102 0.898 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.380 0.620 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.138 0.862 32 H 0.112 0.888 33 H 0.379 0.621 34 H -0.257 1.257 35 H -0.255 1.255 36 H 0.131 0.869 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.297 -1.008 -1.408 3.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.059 3.941 4 C 0.058 3.942 5 O -0.214 6.214 6 C -0.005 4.005 7 C -0.127 4.127 8 H 0.124 0.876 9 C -0.200 4.200 10 C 0.017 3.983 11 H 0.102 0.898 12 O -0.366 6.366 13 C -0.158 4.158 14 C -0.166 4.166 15 C -0.118 4.118 16 C -0.176 4.176 17 O -0.346 6.346 18 Si 0.590 3.410 19 C -0.130 4.130 20 C -0.187 4.187 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.120 0.880 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.093 0.907 28 H 0.228 0.772 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.155 0.845 32 H 0.130 0.870 33 H 0.226 0.774 34 H -0.182 1.182 35 H -0.180 1.180 36 H 0.148 0.852 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.947 -0.139 -0.165 2.955 hybrid contribution 0.083 -0.661 0.037 0.667 sum -2.864 -0.801 -0.128 2.976 Atomic orbital electron populations 1.23120 0.78227 1.04327 1.01363 1.86200 1.21264 1.25673 1.88715 1.18310 0.89151 0.85400 1.01232 1.18246 0.88261 0.86157 1.01508 1.86177 1.18513 1.28058 1.88698 1.22832 0.78201 0.97856 1.01614 1.22307 0.95142 0.96121 0.99086 0.87624 1.23768 0.97737 1.01696 0.96824 1.23297 0.86409 0.98234 0.90378 0.89755 1.86525 1.53375 1.52100 1.44581 1.23075 0.93891 0.99662 0.99161 1.20919 1.00608 0.90188 1.04933 1.20015 0.93388 0.95484 1.02912 1.25024 1.03039 0.99393 0.90172 1.86501 1.37812 1.95204 1.15048 0.94727 0.81168 0.77303 0.87834 1.20672 0.93422 0.97096 1.01859 1.21031 1.00241 0.91118 1.06312 0.92564 0.92470 0.87989 0.91776 0.91568 0.89063 0.90744 0.77224 0.90148 0.88792 0.84464 0.87030 0.77352 1.18211 1.17957 0.85151 0.84226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 101.05 0.99 0.96 16 2 O -0.31 -0.94 10.28 -34.24 -0.35 -1.29 16 3 C 0.10 0.30 6.70 -39.12 -0.26 0.04 16 4 C 0.10 0.34 6.70 -39.12 -0.26 0.08 16 5 O -0.30 -1.08 9.92 -34.24 -0.34 -1.42 16 6 C 0.07 0.06 4.58 37.15 0.17 0.23 16 7 C -0.11 -0.01 4.01 -89.81 -0.36 -0.37 16 8 H 0.11 0.01 8.14 -51.93 -0.42 -0.42 16 9 C -0.16 -0.01 7.46 -25.92 -0.19 -0.21 16 10 C 0.08 -0.01 5.21 -25.92 -0.14 -0.14 16 11 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 12 O -0.56 -0.60 13.67 -35.23 -0.48 -1.09 16 13 C -0.12 0.02 7.47 -25.91 -0.19 -0.17 16 14 C -0.15 -0.28 8.67 -39.46 -0.34 -0.63 16 15 C -0.12 -0.10 5.35 -104.62 -0.56 -0.66 16 16 C -0.07 -0.01 2.80 36.01 0.10 0.09 16 17 O -0.54 -0.30 12.84 -35.23 -0.45 -0.76 16 18 Si 0.69 -0.60 29.80 -169.99 -5.06 -5.66 16 19 C -0.11 -0.01 8.66 -39.57 -0.34 -0.35 16 20 C -0.17 -0.10 9.04 -39.46 -0.36 -0.45 16 21 H 0.06 -0.12 7.66 -51.93 -0.40 -0.52 16 22 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 23 H 0.10 -0.26 8.14 -51.93 -0.42 -0.68 16 24 H 0.06 0.00 7.65 -51.93 -0.40 -0.39 16 25 H 0.07 0.03 7.38 -51.93 -0.38 -0.35 16 26 H 0.09 0.07 7.90 -51.93 -0.41 -0.34 16 27 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 28 H 0.38 -1.12 9.12 45.56 0.42 -0.70 16 29 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 30 H 0.09 0.03 8.10 -51.93 -0.42 -0.39 16 31 H 0.14 0.15 6.30 -52.49 -0.33 -0.18 16 32 H 0.11 0.06 7.96 -51.93 -0.41 -0.35 16 33 H 0.38 -1.22 8.70 45.56 0.40 -0.82 16 34 H -0.26 -0.37 7.11 56.52 0.40 0.03 16 35 H -0.25 -0.60 7.11 56.52 0.40 -0.20 16 36 H 0.13 -0.29 4.89 -52.49 -0.26 -0.55 16 37 H 0.14 -0.26 6.30 -52.49 -0.33 -0.59 16 LS Contribution 307.52 15.07 4.63 4.63 Total: 0.00 -7.59 307.52 -8.04 -15.63 By element: Atomic # 1 Polarization: -4.23 SS G_CDS: -4.24 Total: -8.46 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.75 Total: -1.59 kcal Atomic # 8 Polarization: -2.92 SS G_CDS: -1.63 Total: -4.55 kcal Atomic # 14 Polarization: -0.60 SS G_CDS: -5.06 Total: -5.66 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -7.59 -8.04 -15.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34849_11354860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.348 kcal (2) G-P(sol) polarization free energy of solvation -7.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds