Wall clock time and date at job start Tue Mar 9 2021 14:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35998 * 117.00068 * 2 1 4 4 C 1.39152 * 120.07347 * 180.02562 * 3 2 1 5 5 O 1.35998 * 120.07124 * 0.02562 * 4 3 2 6 6 C 1.42904 * 116.99852 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47002 * 179.97438 * 6 5 4 8 8 H 1.09002 * 112.90771 * 316.24756 * 7 6 5 9 9 C 1.53779 * 113.61529 * 87.50160 * 7 6 5 10 10 C 1.53779 * 87.08402 * 139.98073 * 9 7 6 11 11 H 1.08998 * 113.69354 * 89.12517 * 10 9 7 12 12 O 1.42901 * 113.61423 * 220.02249 * 10 9 7 13 13 C 1.53784 * 113.61233 * 184.99747 * 7 6 5 14 14 C 1.38560 * 119.85126 * 180.30198 * 4 3 2 15 15 C 1.38241 * 120.00049 * 359.46055 * 14 4 3 16 16 C 1.50703 * 119.92535 * 180.25608 * 15 14 4 17 17 O 1.42892 * 109.47104 * 65.26081 * 16 15 14 18 18 Si 1.86303 * 109.47017 * 185.26030 * 16 15 14 19 19 C 1.38246 * 120.14735 * 0.51928 * 15 14 4 20 20 C 1.38248 * 120.14642 * 359.76188 * 19 15 14 21 21 H 1.09002 * 109.47031 * 299.99638 * 1 2 3 22 22 H 1.08998 * 109.47285 * 59.99704 * 1 2 3 23 23 H 1.09000 * 109.47000 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46883 * 59.99670 * 6 5 4 25 25 H 1.09001 * 109.46611 * 300.00094 * 6 5 4 26 26 H 1.09006 * 113.61307 * 25.43275 * 9 7 6 27 27 H 1.09007 * 113.61642 * 254.53032 * 9 7 6 28 28 H 0.96703 * 113.99623 * 277.49399 * 12 10 9 29 29 H 1.09004 * 113.61451 * 105.47254 * 13 7 6 30 30 H 1.08994 * 113.61477 * 334.56556 * 13 7 6 31 31 H 1.08002 * 119.99505 * 179.70328 * 14 4 3 32 32 H 1.09000 * 109.47262 * 305.25860 * 16 15 14 33 33 H 0.96704 * 114.00372 * 59.99689 * 17 16 15 34 34 H 1.48498 * 109.99976 * 58.67996 * 18 16 15 35 35 H 1.48498 * 110.00106 * 180.02562 * 18 16 15 36 36 H 1.07998 * 119.92974 * 179.73824 * 19 15 14 37 37 H 1.07993 * 120.00037 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1796 0.1476 -0.0016 6 6 5.6004 0.3006 -0.0015 7 6 6.2618 -1.0790 -0.0021 8 1 5.7913 -1.7754 0.6919 9 6 6.4728 -1.6604 -1.4101 10 6 7.8361 -2.1673 -0.9110 11 1 7.7975 -3.1613 -0.4654 12 8 8.8845 -2.0305 -1.8724 13 6 7.7939 -1.0276 0.1206 14 6 4.0603 2.5233 0.0058 15 6 3.3029 3.6798 0.0014 16 6 3.9837 5.0243 0.0024 17 8 4.7067 5.1931 -1.2185 18 14 2.7032 6.3686 0.1567 19 6 1.9225 3.6057 0.0014 20 6 1.2932 2.3748 0.0010 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 5.9066 0.8496 0.8889 25 1 5.9065 0.8512 -0.8911 26 1 6.5476 -0.9016 -2.1891 27 1 5.7752 -2.4594 -1.6616 28 1 8.9162 -2.7444 -2.5240 29 1 8.1630 -1.3158 1.1050 30 1 8.2298 -0.0959 -0.2399 31 1 5.1386 2.5839 0.0102 32 1 4.6738 5.0815 0.8443 33 1 4.1546 5.1534 -2.0114 34 1 1.9230 6.1859 1.4070 35 1 3.3617 7.6996 0.1584 36 1 1.3342 4.5115 0.0022 37 1 0.2147 2.3196 0.0015 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_34849_11354860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:58:17 Heat of formation + Delta-G solvation = -98.632152 kcal Electronic energy + Delta-G solvation = -20441.691484 eV Core-core repulsion = 17152.584947 eV Total energy + Delta-G solvation = -3289.106536 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 267.124 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.75109 -40.52193 -39.31660 -38.83786 -36.96233 -36.02669 -31.95345 -31.48785 -29.30527 -28.47532 -26.77264 -26.16933 -24.29090 -22.81880 -22.38913 -20.63195 -19.55282 -18.64404 -18.43181 -18.02591 -17.28748 -17.20224 -16.54436 -16.22495 -16.12664 -15.92649 -15.81550 -15.49070 -14.86578 -14.52346 -14.47785 -13.97944 -13.58302 -13.50440 -13.28801 -13.10157 -12.69224 -12.41929 -12.33268 -12.26778 -12.10413 -11.97780 -11.75262 -11.74110 -11.25109 -10.77646 -10.45543 -9.80866 -8.90120 -4.99704 0.15788 0.26205 1.30842 1.64880 1.96350 2.06797 2.30492 2.54821 3.26278 3.41512 3.47536 3.53800 3.65948 3.73033 3.81109 3.90069 3.94354 4.10846 4.19248 4.25220 4.26484 4.37149 4.40167 4.40894 4.47457 4.61116 4.66720 4.71574 4.74836 4.75663 4.94243 4.99327 5.09025 5.13877 5.32797 5.35654 5.59148 6.04154 6.53417 6.75060 6.84968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.086 3.914 4 C 0.079 3.921 5 O -0.320 6.320 6 C 0.070 3.930 7 C -0.105 4.105 8 H 0.106 0.894 9 C -0.162 4.162 10 C 0.077 3.923 11 H 0.101 0.899 12 O -0.581 6.581 13 C -0.121 4.121 14 C -0.155 4.155 15 C -0.121 4.121 16 C -0.075 4.075 17 O -0.556 6.556 18 Si 0.783 3.217 19 C -0.111 4.111 20 C -0.165 4.165 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.112 0.888 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.395 0.605 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.104 0.896 33 H 0.395 0.605 34 H -0.283 1.283 35 H -0.300 1.300 36 H 0.157 0.843 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.238 -0.761 -1.512 4.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.247 6.247 3 C 0.040 3.960 4 C 0.034 3.966 5 O -0.235 6.235 6 C -0.005 4.005 7 C -0.124 4.124 8 H 0.125 0.875 9 C -0.200 4.200 10 C 0.018 3.982 11 H 0.118 0.882 12 O -0.389 6.389 13 C -0.158 4.158 14 C -0.174 4.174 15 C -0.122 4.122 16 C -0.184 4.184 17 O -0.364 6.364 18 Si 0.688 3.312 19 C -0.128 4.128 20 C -0.183 4.183 21 H 0.086 0.914 22 H 0.089 0.911 23 H 0.130 0.870 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.246 0.754 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.155 0.845 32 H 0.121 0.879 33 H 0.245 0.755 34 H -0.210 1.210 35 H -0.228 1.228 36 H 0.174 0.826 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.890 0.074 -0.299 3.902 hybrid contribution 0.384 -0.718 0.063 0.817 sum -3.505 -0.644 -0.237 3.572 Atomic orbital electron populations 1.23371 0.76371 1.05483 1.02562 1.86155 1.23365 1.26221 1.88934 1.18606 0.89297 0.86130 1.01952 1.18548 0.88866 0.86404 1.02780 1.86137 1.19501 1.28795 1.89044 1.22908 0.77399 0.98463 1.01757 1.22287 0.95300 0.95672 0.99109 0.87550 1.23732 0.98184 1.01485 0.96560 1.23381 0.85784 0.98915 0.90140 0.88178 1.86480 1.53708 1.53389 1.45334 1.23078 0.93486 0.99494 0.99752 1.21004 1.00809 0.90335 1.05224 1.20166 0.93939 0.95338 1.02734 1.25232 1.03429 0.99734 0.90004 1.86464 1.38929 1.95177 1.15879 0.93656 0.78688 0.73295 0.85531 1.20972 0.93204 0.97977 1.00652 1.21348 1.01462 0.90441 1.05083 0.91426 0.91088 0.87014 0.91338 0.91681 0.90026 0.90615 0.75444 0.89180 0.89525 0.84499 0.87860 0.75496 1.20951 1.22778 0.82633 0.81697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.07 16 2 O -0.33 -2.28 10.28 -79.67 -0.82 -3.10 16 3 C 0.09 0.54 6.70 22.57 0.15 0.69 16 4 C 0.08 0.63 6.70 22.57 0.15 0.78 16 5 O -0.32 -2.89 9.92 -79.66 -0.79 -3.68 16 6 C 0.07 0.24 4.58 71.98 0.33 0.57 16 7 C -0.11 -0.13 4.01 -10.27 -0.04 -0.17 16 8 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 9 C -0.16 -0.19 7.46 31.12 0.23 0.04 16 10 C 0.08 0.00 5.21 31.12 0.16 0.17 16 11 H 0.10 -0.33 8.14 -2.39 -0.02 -0.34 16 12 O -0.58 -1.42 13.67 -148.98 -2.04 -3.45 16 13 C -0.12 -0.03 7.47 31.12 0.23 0.20 16 14 C -0.15 -0.77 8.67 22.35 0.19 -0.58 16 15 C -0.12 -0.22 5.35 -19.86 -0.11 -0.33 16 16 C -0.07 -0.03 2.80 71.24 0.20 0.17 16 17 O -0.56 -0.64 12.84 -148.98 -1.91 -2.55 16 18 Si 0.78 -1.91 29.80 68.60 2.04 0.14 16 19 C -0.11 0.10 8.66 22.27 0.19 0.29 16 20 C -0.16 -0.07 9.04 22.35 0.20 0.14 16 21 H 0.07 -0.36 7.66 -2.39 -0.02 -0.38 16 22 H 0.07 -0.41 7.66 -2.39 -0.02 -0.43 16 23 H 0.11 -0.59 8.14 -2.39 -0.02 -0.61 16 24 H 0.07 0.13 7.65 -2.39 -0.02 0.11 16 25 H 0.06 0.20 7.38 -2.39 -0.02 0.18 16 26 H 0.08 0.25 7.90 -2.38 -0.02 0.23 16 27 H 0.08 0.05 8.14 -2.38 -0.02 0.03 16 28 H 0.40 -2.27 9.12 -74.05 -0.68 -2.94 16 29 H 0.09 -0.17 8.14 -2.39 -0.02 -0.18 16 30 H 0.09 0.15 8.10 -2.39 -0.02 0.13 16 31 H 0.14 0.54 6.30 -2.91 -0.02 0.52 16 32 H 0.10 0.18 7.96 -2.39 -0.02 0.16 16 33 H 0.40 -2.72 8.70 -74.05 -0.64 -3.37 16 34 H -0.28 -0.54 7.11 99.48 0.71 0.17 16 35 H -0.30 -1.54 7.11 99.48 0.71 -0.84 16 36 H 0.16 -1.03 4.89 -2.91 -0.01 -1.04 16 37 H 0.17 -0.92 6.30 -2.91 -0.02 -0.94 16 Total: 0.00 -18.36 307.52 -0.69 -19.05 By element: Atomic # 1 Polarization: -9.27 SS G_CDS: -0.18 Total: -9.45 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 3.01 Total: 3.05 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -5.56 Total: -12.79 kcal Atomic # 14 Polarization: -1.91 SS G_CDS: 2.04 Total: 0.14 kcal Total: -18.36 -0.69 -19.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34849_11354860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.583 kcal (2) G-P(sol) polarization free energy of solvation -18.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds