Wall clock time and date at job start Tue Mar 9 2021 14:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35992 * 117.00309 * 2 1 4 4 C 1.39159 * 120.07622 * 179.97438 * 3 2 1 5 5 O 1.35992 * 120.07189 * 0.02601 * 4 3 2 6 6 C 1.42899 * 117.00222 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47457 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46832 * 304.99973 * 7 6 5 9 9 C 1.53006 * 109.47127 * 64.99652 * 7 6 5 10 10 C 1.52997 * 109.47127 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47060 * 300.00449 * 10 9 7 12 12 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 13 13 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 14 14 C 1.52996 * 109.47328 * 60.00126 * 11 10 9 15 15 C 1.52997 * 109.47232 * 184.99774 * 7 6 5 16 16 C 1.38564 * 119.85459 * 180.29760 * 4 3 2 17 17 C 1.38244 * 119.99947 * 359.46814 * 16 4 3 18 18 C 1.50696 * 119.92995 * 180.25709 * 17 16 4 19 19 O 1.42911 * 109.46648 * 300.25710 * 18 17 16 20 20 Si 1.86297 * 109.47439 * 180.25958 * 18 17 16 21 21 C 1.38257 * 120.14693 * 0.51218 * 17 16 4 22 22 C 1.38248 * 120.14364 * 359.76420 * 21 17 16 23 23 H 1.09006 * 109.46865 * 299.99923 * 1 2 3 24 24 H 1.08993 * 109.47089 * 59.99685 * 1 2 3 25 25 H 1.08993 * 109.47340 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47043 * 59.99452 * 6 5 4 27 27 H 1.09002 * 109.46902 * 300.00043 * 6 5 4 28 28 H 1.08998 * 109.46505 * 59.99871 * 9 7 6 29 29 H 1.08996 * 109.46884 * 300.00752 * 9 7 6 30 30 H 1.09002 * 109.47153 * 180.02562 * 10 9 7 31 31 H 1.09001 * 109.46832 * 60.00321 * 10 9 7 32 32 H 0.96700 * 113.99509 * 179.97438 * 13 11 10 33 33 H 1.08992 * 109.47554 * 59.99639 * 14 11 10 34 34 H 1.09004 * 109.47108 * 179.97438 * 14 11 10 35 35 H 1.09002 * 109.47045 * 59.99942 * 15 7 6 36 36 H 1.09001 * 109.47375 * 299.99867 * 15 7 6 37 37 H 1.07995 * 120.00015 * 179.70804 * 16 4 3 38 38 H 1.09000 * 109.46936 * 60.25162 * 18 17 16 39 39 H 0.96703 * 113.99070 * 180.02562 * 19 18 17 40 40 H 1.48505 * 109.99474 * 298.67742 * 20 18 17 41 41 H 1.48497 * 110.00444 * 59.99590 * 20 18 17 42 42 H 1.07990 * 119.93095 * 179.73990 * 21 17 16 43 43 H 1.07999 * 119.99535 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 0.0005 5 8 4.1796 0.1476 0.0005 6 6 5.6003 0.3005 0.0005 7 6 6.2618 -1.0790 0.0012 8 1 5.8874 -1.6611 0.8432 9 6 5.9326 -1.8031 -1.3059 10 6 6.5947 -3.1825 -1.3055 11 6 8.1109 -3.0204 -1.1801 12 1 8.4849 -2.4381 -2.0222 13 8 8.7292 -4.3087 -1.1804 14 6 8.4400 -2.2964 0.1269 15 6 7.7781 -0.9176 0.1268 16 6 4.0604 2.5233 0.0068 17 6 3.3031 3.6798 0.0013 18 6 3.9837 5.0243 0.0023 19 8 4.7992 5.1444 1.1698 20 14 2.6973 6.3718 0.0020 21 6 1.9225 3.6058 0.0004 22 6 1.2933 2.3748 -0.0001 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 5.9066 0.8504 0.8905 27 1 5.9066 0.8503 -0.8895 28 1 6.3070 -1.2210 -2.1479 29 1 4.8524 -1.9180 -1.3954 30 1 6.3605 -3.6981 -2.2369 31 1 6.2206 -3.7647 -0.4634 32 1 9.6928 -4.2824 -1.1039 33 1 8.0660 -2.8786 0.9690 34 1 9.5203 -2.1814 0.2165 35 1 8.0126 -0.4017 1.0580 36 1 8.1526 -0.3355 -0.7152 37 1 5.1386 2.5839 0.0120 38 1 4.6069 5.1166 -0.8872 39 1 5.2683 5.9874 1.2366 40 1 1.8630 6.2771 -1.2229 41 1 1.8411 6.2569 1.2098 42 1 1.3343 4.5114 0.0004 43 1 0.2147 2.3197 -0.0004 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_34849_16737256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:59:43 Heat of formation + Delta-G solvation = -138.682142 kcal Electronic energy + Delta-G solvation = -24304.314206 eV Core-core repulsion = 20702.395734 eV Total energy + Delta-G solvation = -3601.918472 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.155 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.83040 -40.38018 -39.39542 -38.83431 -37.14506 -36.64803 -32.46809 -31.90901 -31.86893 -30.97315 -28.67070 -26.87739 -26.05169 -23.98054 -23.47847 -22.56063 -22.00150 -20.88486 -19.60367 -18.50840 -18.25921 -18.21493 -17.83677 -17.26786 -16.68200 -16.38679 -16.16221 -15.96114 -15.63054 -15.51168 -15.34780 -14.80969 -14.65710 -14.20146 -14.08207 -13.87605 -13.74131 -13.57111 -13.29944 -13.16986 -12.94510 -12.56249 -12.31420 -12.24620 -12.18483 -12.15310 -12.05017 -11.89480 -11.66894 -11.54689 -11.13213 -10.72773 -10.33999 -9.89145 -8.99710 -4.94198 0.04797 0.10410 1.29877 1.64625 1.96907 2.04752 2.19409 2.40738 3.20972 3.35611 3.53899 3.57116 3.66102 3.68060 3.80582 3.88141 3.96708 4.05990 4.15276 4.15777 4.25900 4.28020 4.28606 4.31973 4.35803 4.42392 4.45444 4.49241 4.52603 4.54449 4.63110 4.79373 4.86039 4.95203 4.96056 5.02721 5.06510 5.12070 5.15992 5.22476 5.29318 5.39961 5.45319 5.96690 6.44409 6.86493 6.91020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.084 3.916 4 C 0.090 3.910 5 O -0.317 6.317 6 C 0.059 3.941 7 C -0.082 4.082 8 H 0.070 0.930 9 C -0.104 4.104 10 C -0.114 4.114 11 C 0.102 3.898 12 H 0.065 0.935 13 O -0.591 6.591 14 C -0.145 4.145 15 C -0.105 4.105 16 C -0.147 4.147 17 C -0.086 4.086 18 C -0.076 4.076 19 O -0.563 6.563 20 Si 0.776 3.224 21 C -0.138 4.138 22 C -0.167 4.167 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.116 0.884 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.394 0.606 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.154 0.846 38 H 0.097 0.903 39 H 0.404 0.596 40 H -0.287 1.287 41 H -0.298 1.298 42 H 0.126 0.874 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 5.791 -1.163 6.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.039 3.961 4 C 0.044 3.956 5 O -0.232 6.232 6 C -0.016 4.016 7 C -0.101 4.101 8 H 0.089 0.911 9 C -0.142 4.142 10 C -0.152 4.152 11 C 0.044 3.956 12 H 0.083 0.917 13 O -0.400 6.400 14 C -0.183 4.183 15 C -0.142 4.142 16 C -0.166 4.166 17 C -0.087 4.087 18 C -0.185 4.185 19 O -0.373 6.373 20 Si 0.682 3.318 21 C -0.156 4.156 22 C -0.186 4.186 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.135 0.865 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.244 0.756 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.172 0.828 38 H 0.115 0.885 39 H 0.255 0.745 40 H -0.214 1.214 41 H -0.226 1.226 42 H 0.143 0.857 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.360 4.794 -1.119 5.107 hybrid contribution 0.198 -0.356 0.066 0.413 sum 1.559 4.438 -1.052 4.820 Atomic orbital electron populations 1.23361 0.76522 1.05628 1.02253 1.86157 1.23213 1.25856 1.88938 1.18530 0.89632 0.85750 1.02237 1.18501 0.88579 0.86672 1.01803 1.86146 1.19983 1.28272 1.88771 1.23088 0.77015 0.99054 1.02433 1.21178 0.95957 0.93942 0.99000 0.91126 1.21449 1.00417 0.94980 0.97320 1.21474 0.93921 0.97542 1.02236 1.21889 0.93107 0.83665 0.96989 0.91662 1.86491 1.26428 1.30061 1.96986 1.22186 1.01775 0.96290 0.98042 1.21429 0.91904 0.97164 1.03749 1.21062 1.01380 0.89616 1.04514 1.19464 0.92839 0.95009 1.01348 1.24795 1.02567 0.99456 0.91732 1.86443 1.64615 1.44183 1.42108 0.94451 0.77086 0.83942 0.76276 1.20760 0.94133 0.97313 1.03388 1.21201 1.01213 0.90585 1.05551 0.91726 0.91494 0.86531 0.91081 0.90627 0.90797 0.92082 0.91835 0.92473 0.75616 0.92089 0.89691 0.90193 0.90046 0.82829 0.88529 0.74451 1.21439 1.22563 0.85691 0.82434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.81 113.37 1.11 1.12 16 2 O -0.33 -3.18 10.28 -79.60 -0.82 -4.00 16 3 C 0.08 0.83 6.70 22.57 0.15 0.98 16 4 C 0.09 0.87 6.70 22.57 0.15 1.02 16 5 O -0.32 -2.93 9.46 -79.59 -0.75 -3.68 16 6 C 0.06 0.11 4.12 71.98 0.30 0.40 16 7 C -0.08 -0.06 2.43 -10.79 -0.03 -0.09 16 8 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 9 C -0.10 -0.22 5.10 30.60 0.16 -0.06 16 10 C -0.11 -0.39 5.57 30.59 0.17 -0.22 16 11 C 0.10 0.07 3.47 30.59 0.11 0.18 16 12 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 13 O -0.59 -1.91 13.32 -148.98 -1.98 -3.89 16 14 C -0.15 0.31 5.54 30.58 0.17 0.48 16 15 C -0.10 0.35 5.20 30.58 0.16 0.51 16 16 C -0.15 -0.94 8.59 22.35 0.19 -0.75 16 17 C -0.09 -0.52 5.43 -19.86 -0.11 -0.62 16 18 C -0.08 0.05 2.81 71.23 0.20 0.25 16 19 O -0.56 0.47 12.74 -148.98 -1.90 -1.43 16 20 Si 0.78 -1.70 29.78 68.60 2.04 0.34 16 21 C -0.14 -0.94 8.66 22.28 0.19 -0.75 16 22 C -0.17 -1.08 9.04 22.35 0.20 -0.88 16 23 H 0.06 -0.10 7.66 -2.38 -0.02 -0.11 16 24 H 0.07 -0.13 7.66 -2.39 -0.02 -0.15 16 25 H 0.12 -0.32 8.14 -2.39 -0.02 -0.34 16 26 H 0.07 0.02 7.65 -2.39 -0.02 0.01 16 27 H 0.08 -0.07 7.68 -2.39 -0.02 -0.09 16 28 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.06 0.35 7.82 -2.39 -0.02 0.33 16 30 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.39 -2.09 9.08 -74.06 -0.67 -2.77 16 33 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.08 -0.44 8.14 -2.38 -0.02 -0.46 16 35 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 36 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.15 0.37 6.30 -2.91 -0.02 0.35 16 38 H 0.10 -0.49 7.96 -2.39 -0.02 -0.51 16 39 H 0.40 -4.70 8.74 -74.06 -0.65 -5.35 16 40 H -0.29 -0.86 7.11 99.48 0.71 -0.15 16 41 H -0.30 -1.66 7.11 99.48 0.71 -0.96 16 42 H 0.13 0.63 4.87 -2.92 -0.01 0.61 16 43 H 0.16 0.18 6.30 -2.91 -0.02 0.16 16 Total: 0.00 -20.09 342.12 -0.55 -20.63 By element: Atomic # 1 Polarization: -9.29 SS G_CDS: -0.26 Total: -9.55 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 3.13 Total: 1.58 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -5.45 Total: -13.00 kcal Atomic # 14 Polarization: -1.70 SS G_CDS: 2.04 Total: 0.34 kcal Total: -20.09 -0.55 -20.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34849_16737256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.050 kcal (2) G-P(sol) polarization free energy of solvation -20.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds