Wall clock time and date at job start Tue Mar 9 2021 15:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35994 * 117.00043 * 2 1 4 4 C 1.39149 * 120.07657 * 179.97438 * 3 2 1 5 5 O 1.35993 * 120.07098 * 0.02562 * 4 3 2 6 6 C 1.42901 * 117.00042 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47024 * 180.02562 * 6 5 4 8 8 H 1.09002 * 112.85199 * 45.32775 * 7 6 5 9 9 C 1.53783 * 113.61317 * 176.53369 * 7 6 5 10 10 C 1.53772 * 87.08367 * 89.11337 * 9 7 6 11 11 O 1.42900 * 113.61439 * 270.79655 * 10 9 7 12 12 C 1.42899 * 114.00343 * 294.79821 * 11 10 9 13 13 C 1.53002 * 113.61400 * 139.98320 * 10 9 7 14 14 F 1.39896 * 109.47385 * 54.71555 * 13 10 9 15 15 F 1.39903 * 109.46995 * 174.71925 * 13 10 9 16 16 F 1.39900 * 109.47010 * 294.71511 * 13 10 9 17 17 C 1.53785 * 113.61290 * 274.13624 * 7 6 5 18 18 C 1.38564 * 119.85916 * 179.74861 * 4 3 2 19 19 C 1.38244 * 119.99335 * 0.52834 * 18 4 3 20 20 C 1.50702 * 119.92496 * 179.77231 * 19 18 4 21 21 O 1.42901 * 109.47596 * 64.71640 * 20 19 18 22 22 Si 1.86303 * 109.47010 * 184.72201 * 20 19 18 23 23 C 1.38251 * 120.15184 * 359.48833 * 19 18 4 24 24 C 1.38240 * 120.14000 * 0.23627 * 23 19 18 25 25 H 1.09002 * 109.46876 * 59.99573 * 1 2 3 26 26 H 1.09000 * 109.46716 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46799 * 299.99891 * 1 2 3 28 28 H 1.08998 * 109.47179 * 300.00083 * 6 5 4 29 29 H 1.08996 * 109.46920 * 60.00304 * 6 5 4 30 30 H 1.08997 * 113.61001 * 203.66447 * 9 7 6 31 31 H 1.09000 * 113.60953 * 334.56047 * 9 7 6 32 32 H 1.08999 * 109.47356 * 182.53034 * 12 11 10 33 33 H 1.09003 * 109.46683 * 302.52797 * 12 11 10 34 34 H 1.09000 * 109.47424 * 62.52357 * 12 11 10 35 35 H 1.08998 * 113.61307 * 25.43023 * 17 7 6 36 36 H 1.08999 * 113.61447 * 156.33520 * 17 7 6 37 37 H 1.08002 * 120.00768 * 180.27373 * 18 4 3 38 38 H 1.08998 * 109.46849 * 304.71747 * 20 19 18 39 39 H 0.96706 * 113.99558 * 60.00493 * 21 20 19 40 40 H 1.48501 * 110.00171 * 58.68114 * 22 20 19 41 41 H 1.48503 * 109.99731 * 179.97438 * 22 20 19 42 42 H 1.07994 * 119.93034 * 180.25559 * 23 19 18 43 43 H 1.08005 * 119.99977 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2864 0.0005 5 8 4.1796 0.1478 0.0005 6 6 5.6004 0.3008 0.0017 7 6 6.2619 -1.0789 0.0009 8 1 5.8086 -1.7652 -0.7144 9 6 7.7965 -1.0261 -0.0832 10 6 7.8002 -0.9664 1.4533 11 8 7.7357 0.3626 1.9747 12 6 8.8808 1.1620 1.6718 13 6 8.9075 -1.8037 2.0966 14 9 10.1458 -1.4251 1.5672 15 9 8.9075 -1.5933 3.4797 16 9 8.6815 -3.1586 1.8311 17 6 6.4356 -1.6796 1.4058 18 6 4.0604 2.5234 -0.0047 19 6 3.3029 3.6798 0.0005 20 6 3.9837 5.0244 0.0000 21 8 4.7070 5.1916 -1.2210 22 14 2.7030 6.3688 0.1524 23 6 1.9224 3.6058 0.0004 24 6 1.2933 2.3748 -0.0001 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 5.9073 0.8510 -0.8878 29 1 5.9059 0.8500 0.8922 30 1 8.2431 -1.9352 -0.4859 31 1 8.1769 -0.1209 -0.5564 32 1 8.7748 2.1407 2.1399 33 1 9.7769 0.6722 2.0527 34 1 8.9641 1.2830 0.5917 35 1 5.7181 -1.3014 2.1341 36 1 6.5108 -2.7670 1.4095 37 1 5.1387 2.5841 -0.0088 38 1 4.6735 5.0826 0.8418 39 1 4.1549 5.1511 -2.0140 40 1 1.9227 6.1877 1.4028 41 1 3.3617 7.6998 0.1536 42 1 1.3342 4.5115 0.0003 43 1 0.2147 2.3196 -0.0007 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_34849_17321602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:04:01 Heat of formation + Delta-G solvation = -231.792657 kcal Electronic energy + Delta-G solvation = -32437.813438 eV Core-core repulsion = 27423.495464 eV Total energy + Delta-G solvation = -5014.317974 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.15922 -48.70643 -48.58906 -41.87779 -41.27888 -39.36085 -38.86138 -37.23086 -36.80801 -31.97784 -31.53252 -30.27428 -28.61193 -28.29714 -27.35562 -26.87517 -26.10748 -23.86963 -22.95385 -22.40363 -20.63590 -19.83991 -19.49152 -19.41167 -19.20628 -18.40459 -18.04135 -17.37626 -17.26547 -17.00589 -16.55819 -16.36262 -16.13609 -15.96241 -15.83011 -15.68572 -15.54445 -15.47919 -15.41954 -15.07790 -14.84561 -14.77817 -14.60235 -14.48628 -14.27374 -14.02534 -13.83023 -13.37760 -13.34336 -13.21929 -13.00574 -12.77050 -12.47036 -12.32689 -12.11933 -12.02192 -11.96897 -11.82566 -11.76910 -11.64680 -10.85652 -10.45706 -9.74428 -8.80567 -5.05179 0.22806 0.33265 1.27825 1.56544 1.62598 1.95574 1.98281 2.05310 2.28986 2.55498 2.61416 2.63746 2.86853 3.27188 3.36088 3.43122 3.47357 3.61780 3.67379 3.81295 3.93197 4.08645 4.11937 4.14311 4.18788 4.22895 4.25321 4.27594 4.33900 4.36893 4.41088 4.47968 4.53074 4.58247 4.59502 4.62423 4.68701 4.75201 4.93913 5.03931 5.16806 5.40489 5.60807 5.61886 6.07622 6.54545 6.58845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.106 3.894 4 C 0.106 3.894 5 O -0.300 6.300 6 C 0.068 3.932 7 C -0.097 4.097 8 H 0.106 0.894 9 C -0.143 4.143 10 C 0.038 3.962 11 O -0.332 6.332 12 C 0.009 3.991 13 C 0.437 3.563 14 F -0.182 7.182 15 F -0.174 7.174 16 F -0.174 7.174 17 C -0.111 4.111 18 C -0.146 4.146 19 C -0.118 4.118 20 C -0.065 4.065 21 O -0.541 6.541 22 Si 0.687 3.313 23 C -0.112 4.112 24 C -0.168 4.168 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.138 0.862 38 H 0.112 0.888 39 H 0.379 0.621 40 H -0.257 1.257 41 H -0.255 1.255 42 H 0.131 0.869 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.366 1.168 -3.652 5.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.060 3.940 4 C 0.060 3.940 5 O -0.214 6.214 6 C -0.007 4.007 7 C -0.115 4.115 8 H 0.125 0.875 9 C -0.180 4.180 10 C -0.004 4.004 11 O -0.250 6.250 12 C -0.087 4.087 13 C 0.382 3.618 14 F -0.163 7.163 15 F -0.155 7.155 16 F -0.156 7.156 17 C -0.148 4.148 18 C -0.164 4.164 19 C -0.118 4.118 20 C -0.176 4.176 21 O -0.346 6.346 22 Si 0.589 3.411 23 C -0.130 4.130 24 C -0.187 4.187 25 H 0.075 0.925 26 H 0.120 0.880 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.131 0.869 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.130 0.870 39 H 0.226 0.774 40 H -0.182 1.182 41 H -0.180 1.180 42 H 0.148 0.852 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.261 1.559 -2.626 4.467 hybrid contribution 0.899 -0.312 0.407 1.035 sum -2.362 1.246 -2.219 3.472 Atomic orbital electron populations 1.23122 0.78215 1.04340 1.01357 1.86199 1.21268 1.25644 1.88698 1.18301 0.89128 0.85410 1.01177 1.18198 0.88170 0.86036 1.01612 1.86126 1.18277 1.28153 1.88803 1.22745 0.78381 0.96849 1.02694 1.22052 0.94368 0.96766 0.98332 0.87527 1.23589 0.96523 1.05505 0.92389 1.24115 0.95375 0.85687 0.95238 1.88087 1.41379 1.19431 1.76110 1.23159 0.88215 0.95968 1.01352 1.21184 0.83394 0.79646 0.77533 1.93184 1.46096 1.90812 1.86222 1.93221 1.96583 1.94591 1.31149 1.93181 1.94410 1.34313 1.93683 1.23306 0.92167 1.00996 0.98317 1.20904 1.00583 0.90159 1.04800 1.20007 0.93379 0.95470 1.02987 1.25011 1.03012 0.99407 0.90123 1.86496 1.37826 1.95232 1.15050 0.94752 0.81176 0.77306 0.87887 1.20671 0.93432 0.97095 1.01817 1.21029 1.00247 0.91117 1.06324 0.92481 0.87976 0.92563 0.91539 0.89933 0.86909 0.88708 0.88016 0.92665 0.92620 0.88259 0.86526 0.84467 0.87019 0.77363 1.18194 1.17986 0.85180 0.84236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 101.05 0.99 0.96 16 2 O -0.30 -0.81 10.28 -34.23 -0.35 -1.16 16 3 C 0.11 0.25 6.70 -39.12 -0.26 -0.01 16 4 C 0.11 0.28 6.70 -39.12 -0.26 0.02 16 5 O -0.30 -0.84 9.92 -34.22 -0.34 -1.18 16 6 C 0.07 0.01 4.34 37.16 0.16 0.17 16 7 C -0.10 0.11 4.19 -89.80 -0.38 -0.27 16 8 H 0.11 -0.16 8.14 -51.93 -0.42 -0.58 16 9 C -0.14 0.28 6.52 -25.92 -0.17 0.11 16 10 C 0.04 0.00 0.85 -89.67 -0.08 -0.08 16 11 O -0.33 -0.22 8.34 -35.23 -0.29 -0.52 16 12 C 0.01 -0.01 10.43 101.05 1.05 1.04 16 13 C 0.44 0.63 2.51 37.16 0.09 0.73 16 14 F -0.18 -0.30 15.24 2.25 0.03 -0.26 16 15 F -0.17 -0.56 17.09 2.25 0.04 -0.52 16 16 F -0.17 -0.26 15.82 2.25 0.04 -0.23 16 17 C -0.11 0.06 6.92 -25.77 -0.18 -0.12 16 18 C -0.15 -0.20 8.67 -39.46 -0.34 -0.55 16 19 C -0.12 -0.06 5.35 -104.61 -0.56 -0.62 16 20 C -0.06 0.02 2.80 36.01 0.10 0.12 16 21 O -0.54 0.02 12.83 -35.23 -0.45 -0.43 16 22 Si 0.69 -0.77 29.80 -169.99 -5.06 -5.84 16 23 C -0.11 0.03 8.66 -39.58 -0.34 -0.31 16 24 C -0.17 -0.04 9.04 -39.46 -0.36 -0.40 16 25 H 0.06 -0.15 7.66 -51.93 -0.40 -0.55 16 26 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 27 H 0.06 -0.13 7.66 -51.93 -0.40 -0.53 16 28 H 0.07 -0.06 7.65 -51.93 -0.40 -0.46 16 29 H 0.08 0.04 5.63 -51.93 -0.29 -0.26 16 30 H 0.11 -0.32 8.06 -51.93 -0.42 -0.74 16 31 H 0.09 -0.27 6.70 -51.93 -0.35 -0.61 16 32 H 0.10 -0.22 8.14 -51.93 -0.42 -0.65 16 33 H 0.05 -0.03 6.25 -51.93 -0.32 -0.35 16 34 H 0.06 -0.14 6.76 -51.93 -0.35 -0.49 16 35 H 0.10 0.03 8.10 -51.93 -0.42 -0.39 16 36 H 0.12 -0.17 7.01 -51.93 -0.36 -0.54 16 37 H 0.14 0.08 6.30 -52.49 -0.33 -0.25 16 38 H 0.11 0.02 7.96 -51.93 -0.41 -0.39 16 39 H 0.38 -1.43 8.70 45.56 0.40 -1.03 16 40 H -0.26 -0.33 7.11 56.52 0.40 0.07 16 41 H -0.25 -0.53 7.11 56.52 0.40 -0.13 16 42 H 0.13 -0.32 4.89 -52.49 -0.26 -0.58 16 43 H 0.14 -0.29 6.30 -52.48 -0.33 -0.62 16 LS Contribution 357.09 15.07 5.38 5.38 Total: 0.00 -7.11 357.09 -6.65 -13.76 By element: Atomic # 1 Polarization: -4.68 SS G_CDS: -5.11 Total: -9.79 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -0.52 Total: 0.79 kcal Atomic # 8 Polarization: -1.85 SS G_CDS: -1.44 Total: -3.28 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.11 Total: -1.02 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: -5.06 Total: -5.84 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -7.11 -6.65 -13.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34849_17321602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.037 kcal (2) G-P(sol) polarization free energy of solvation -7.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds