Wall clock time and date at job start Tue Mar 9 2021 15:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99996 * 2 1 4 4 C 1.53006 * 112.84717 * 294.01323 * 3 2 1 5 5 F 1.39899 * 109.47109 * 195.91789 * 4 3 2 6 6 F 1.39904 * 109.46929 * 315.92044 * 4 3 2 7 7 F 1.39904 * 109.46847 * 75.91716 * 4 3 2 8 8 C 1.54053 * 113.69103 * 162.74421 * 3 2 1 9 9 C 1.53788 * 86.98201 * 270.87277 * 8 3 2 10 10 H 1.08996 * 113.61136 * 219.98218 * 9 8 3 11 11 C 1.52995 * 113.61633 * 89.15857 * 9 8 3 12 12 O 1.42903 * 109.46680 * 85.86707 * 11 9 8 13 13 C 1.35920 * 116.99959 * 180.02562 * 12 11 9 14 14 C 1.38706 * 120.04751 * 180.02562 * 13 12 11 15 15 C 1.38157 * 119.95576 * 179.97438 * 14 13 12 16 16 C 1.50698 * 119.97903 * 179.97438 * 15 14 13 17 17 O 1.42897 * 109.46780 * 15.79963 * 16 15 14 18 18 Si 1.86296 * 109.47375 * 255.79897 * 16 15 14 19 19 C 1.38323 * 120.04278 * 0.02562 * 15 14 13 20 20 Br 1.89107 * 119.95187 * 180.27087 * 19 15 14 21 21 C 1.38359 * 120.09417 * 359.97438 * 19 15 14 22 22 C 1.38121 * 120.04875 * 0.02562 * 21 19 15 23 23 C 1.53775 * 113.61668 * 65.20961 * 3 2 1 24 24 H 1.09001 * 109.47722 * 305.01894 * 1 2 3 25 25 H 1.09001 * 109.47407 * 65.02322 * 1 2 3 26 26 H 1.09010 * 109.47132 * 185.01903 * 1 2 3 27 27 H 1.08992 * 113.61513 * 156.36997 * 8 3 2 28 28 H 1.08994 * 113.69492 * 25.38399 * 8 3 2 29 29 H 1.08995 * 109.47458 * 325.86371 * 11 9 8 30 30 H 1.09000 * 109.47310 * 205.86277 * 11 9 8 31 31 H 1.08002 * 120.01776 * 359.97438 * 14 13 12 32 32 H 1.09007 * 109.46885 * 135.79582 * 16 15 14 33 33 H 0.96701 * 114.00239 * 179.97438 * 17 16 15 34 34 H 1.48496 * 110.00236 * 65.09551 * 18 16 15 35 35 H 1.48500 * 109.99816 * 186.41284 * 18 16 15 36 36 H 1.08005 * 119.98089 * 179.97438 * 21 19 15 37 37 H 1.07996 * 120.02660 * 180.02562 * 22 21 19 38 38 H 1.09004 * 113.61127 * 334.65089 * 23 3 2 39 39 H 1.09002 * 113.61722 * 203.75269 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7276 2.0816 -1.2880 5 9 2.6019 3.1700 -1.3779 6 9 1.9153 1.2403 -2.3900 7 9 0.4072 2.5439 -1.2737 8 6 3.4927 1.3230 0.4185 9 6 2.9981 1.4841 1.8657 10 1 3.5936 2.1809 2.4555 11 6 2.7566 0.1542 2.5825 12 8 3.9805 -0.3046 3.1601 13 6 3.9398 -1.4821 3.8378 14 6 5.0913 -1.9862 4.4241 15 6 5.0475 -3.1830 5.1130 16 6 6.2984 -3.7315 5.7497 17 8 7.2837 -2.6997 5.8300 18 14 6.9546 -5.1379 4.7191 19 6 3.8565 -3.8786 5.2178 20 35 3.7979 -5.5126 6.1679 21 6 2.7068 -3.3775 4.6337 22 6 2.7461 -2.1814 3.9441 23 6 1.7210 2.1085 1.2791 24 1 -0.3634 0.5897 0.8416 25 1 -0.3634 0.4339 -0.9315 26 1 -0.3634 -1.0238 0.0899 27 1 4.0414 2.1878 0.0458 28 1 4.0104 0.3813 0.2363 29 1 2.3934 -0.5835 1.8671 30 1 2.0143 0.2945 3.3683 31 1 6.0214 -1.4435 4.3421 32 1 6.0677 -4.0923 6.7521 33 1 8.1173 -2.9820 6.2308 34 1 7.3878 -4.6351 3.3907 35 1 8.0956 -5.7870 5.4133 36 1 1.7779 -3.9224 4.7163 37 1 1.8483 -1.7904 3.4887 38 1 0.8094 1.8006 1.7913 39 1 1.7863 3.1878 1.1412 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_7425986_17321602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:12:05 Heat of formation + Delta-G solvation = -192.623010 kcal Electronic energy + Delta-G solvation = -29691.009410 eV Core-core repulsion = 24812.791768 eV Total energy + Delta-G solvation = -4878.217642 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.022 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.26294 -48.79863 -48.73681 -41.77660 -40.98511 -39.13025 -37.61697 -37.00156 -33.11927 -32.68955 -30.90664 -29.58966 -28.16279 -27.45133 -26.77867 -26.74060 -23.66288 -23.42397 -22.09993 -20.59382 -19.83514 -19.55726 -19.23081 -19.02250 -18.59993 -17.31491 -17.07639 -16.88873 -16.82191 -16.45721 -16.25304 -15.85234 -15.76480 -15.66222 -15.58614 -15.24556 -15.15965 -14.92298 -14.87828 -14.80788 -14.48805 -14.21768 -14.03336 -13.87937 -13.51654 -13.21941 -13.15442 -12.77304 -12.74911 -12.60748 -12.34038 -12.09872 -12.04261 -11.85260 -11.60200 -11.34014 -11.18255 -11.02077 -10.79822 -9.74565 -9.18363 -5.00253 -0.02047 0.16953 0.60961 1.18665 1.48490 1.52556 1.84111 1.97675 2.09056 2.52835 2.55875 2.62196 2.88351 3.00983 3.30218 3.36767 3.46601 3.56273 3.71641 3.79761 4.08010 4.18035 4.21173 4.25655 4.27674 4.32625 4.38590 4.40515 4.48976 4.50498 4.66020 4.70306 4.80584 4.82693 4.87703 4.92242 5.04572 5.15458 5.22423 5.48113 5.71827 6.30481 6.51823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.345 6.345 3 C 0.037 3.963 4 C 0.432 3.568 5 F -0.177 7.177 6 F -0.189 7.189 7 F -0.184 7.184 8 C -0.116 4.116 9 C -0.095 4.095 10 H 0.111 0.889 11 C 0.064 3.936 12 O -0.323 6.323 13 C 0.143 3.857 14 C -0.152 4.152 15 C -0.019 4.019 16 C -0.077 4.077 17 O -0.550 6.550 18 Si 0.719 3.281 19 C -0.138 4.138 20 Br -0.019 7.019 21 C -0.040 4.040 22 C -0.204 4.204 23 C -0.131 4.131 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.400 0.600 34 H -0.294 1.294 35 H -0.257 1.257 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.111 0.889 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.985 -0.752 3.030 5.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.263 6.263 3 C -0.005 4.005 4 C 0.377 3.623 5 F -0.159 7.159 6 F -0.170 7.170 7 F -0.165 7.165 8 C -0.153 4.153 9 C -0.113 4.113 10 H 0.130 0.870 11 C -0.010 4.010 12 O -0.236 6.236 13 C 0.097 3.903 14 C -0.171 4.171 15 C -0.021 4.021 16 C -0.186 4.186 17 O -0.360 6.360 18 Si 0.620 3.380 19 C -0.218 4.218 20 Br 0.066 6.934 21 C -0.059 4.059 22 C -0.223 4.223 23 C -0.168 4.168 24 H 0.092 0.908 25 H 0.060 0.940 26 H 0.134 0.866 27 H 0.140 0.860 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.148 0.852 32 H 0.120 0.880 33 H 0.251 0.749 34 H -0.221 1.221 35 H -0.181 1.181 36 H 0.180 0.820 37 H 0.178 0.822 38 H 0.129 0.871 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.541 -1.374 2.620 4.614 hybrid contribution 0.640 1.387 -0.328 1.563 sum -2.901 0.014 2.292 3.697 Atomic orbital electron populations 1.23312 0.78595 1.05515 1.01782 1.88076 1.22170 1.22192 1.93818 1.24220 1.00350 0.86393 0.89567 1.21557 0.74143 0.78699 0.87894 1.93171 1.69418 1.56664 1.96639 1.93188 1.94880 1.71290 1.57676 1.93185 1.36761 1.89711 1.96854 1.23374 0.90733 1.05491 0.95728 1.22041 0.98000 0.96279 0.94985 0.87043 1.22966 0.84648 0.95861 0.97541 1.86042 1.36618 1.34853 1.66123 1.19150 0.94210 0.85660 0.91320 1.20150 0.98014 0.97089 1.01883 1.18993 0.93074 0.93722 0.96319 1.24905 0.89489 0.98249 1.05921 1.86467 1.27740 1.36594 1.85163 0.93828 0.86254 0.80956 0.76917 1.21400 0.95790 0.96723 1.07865 1.96681 1.97537 1.25763 1.73425 1.21155 0.97463 0.94438 0.92871 1.21518 0.97893 0.97424 1.05493 1.23614 0.99774 1.01410 0.92049 0.90838 0.93956 0.86636 0.85992 0.89411 0.89632 0.89632 0.85151 0.87988 0.74947 1.22097 1.18111 0.81968 0.82233 0.87071 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 10.29 113.37 1.17 1.15 16 2 O -0.34 0.38 8.35 -148.98 -1.24 -0.87 16 3 C 0.04 -0.07 0.85 -10.17 -0.01 -0.08 16 4 C 0.43 0.85 2.52 71.98 0.18 1.03 16 5 F -0.18 -0.42 15.81 44.97 0.71 0.29 16 6 F -0.19 -1.20 17.10 44.97 0.77 -0.43 16 7 F -0.18 -0.38 15.40 44.97 0.69 0.31 16 8 C -0.12 0.29 6.92 31.22 0.22 0.50 16 9 C -0.09 0.46 4.19 -10.27 -0.04 0.42 16 10 H 0.11 -0.62 8.14 -2.39 -0.02 -0.64 16 11 C 0.06 -0.21 4.34 71.98 0.31 0.10 16 12 O -0.32 -1.04 10.14 -92.65 -0.94 -1.98 16 13 C 0.14 0.56 6.69 22.50 0.15 0.71 16 14 C -0.15 -1.00 9.30 22.36 0.21 -0.79 16 15 C -0.02 -0.08 4.50 -19.86 -0.09 -0.17 16 16 C -0.08 -0.15 2.43 71.24 0.17 0.02 16 17 O -0.55 -1.56 11.50 -148.98 -1.71 -3.27 16 18 Si 0.72 1.48 30.94 68.60 2.12 3.60 16 19 C -0.14 -0.18 5.95 22.32 0.13 -0.05 16 20 Br -0.02 0.02 30.33 -20.37 -0.62 -0.60 16 21 C -0.04 0.05 9.78 22.27 0.22 0.27 16 22 C -0.20 0.14 9.04 22.36 0.20 0.35 16 23 C -0.13 0.91 6.51 31.12 0.20 1.11 16 24 H 0.07 -0.66 6.54 -2.39 -0.02 -0.68 16 25 H 0.04 -0.11 6.70 -2.39 -0.02 -0.13 16 26 H 0.12 -0.95 8.14 -2.38 -0.02 -0.97 16 27 H 0.12 -0.48 7.02 -2.39 -0.02 -0.49 16 28 H 0.09 0.00 8.10 -2.39 -0.02 -0.02 16 29 H 0.09 -0.26 5.61 -2.39 -0.01 -0.27 16 30 H 0.09 -0.58 7.66 -2.39 -0.02 -0.60 16 31 H 0.13 1.15 7.15 -2.91 -0.02 1.13 16 32 H 0.10 -0.10 7.17 -2.38 -0.02 -0.12 16 33 H 0.40 -2.19 8.74 -74.06 -0.65 -2.84 16 34 H -0.29 -2.92 7.11 99.48 0.71 -2.21 16 35 H -0.26 -0.92 7.11 99.48 0.71 -0.22 16 36 H 0.16 -1.00 8.06 -2.91 -0.02 -1.02 16 37 H 0.16 -0.95 6.30 -2.91 -0.02 -0.96 16 38 H 0.11 -1.11 6.63 -2.38 -0.02 -1.13 16 39 H 0.12 -1.04 8.05 -2.39 -0.02 -1.06 16 Total: 0.00 -13.92 347.10 3.32 -10.60 By element: Atomic # 1 Polarization: -12.73 SS G_CDS: 0.51 Total: -12.22 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 3.02 Total: 4.56 kcal Atomic # 8 Polarization: -2.23 SS G_CDS: -3.90 Total: -6.12 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 2.17 Total: 0.18 kcal Atomic # 14 Polarization: 1.48 SS G_CDS: 2.12 Total: 3.60 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -0.62 Total: -0.60 kcal Total: -13.92 3.32 -10.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_7425986_17321602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.024 kcal (2) G-P(sol) polarization free energy of solvation -13.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds