Wall clock time and date at job start Tue Mar 9 2021 15:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86304 * 109.47094 * 2 1 4 4 C 1.86301 * 109.46883 * 240.00283 * 2 1 3 5 5 C 1.86794 * 109.47058 * 120.00376 * 2 1 3 6 6 C 1.38233 * 120.00436 * 90.00034 * 5 2 1 7 7 C 1.38230 * 120.00214 * 180.02562 * 6 5 2 8 8 C 1.38234 * 120.00398 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00165 * 179.97438 * 8 7 6 10 10 O 1.42904 * 109.47052 * 90.00360 * 9 8 7 11 11 C 1.35911 * 116.99551 * 179.97438 * 10 9 8 12 12 C 1.38704 * 120.04812 * 359.97438 * 11 10 9 13 13 C 1.38166 * 119.95181 * 179.72097 * 12 11 10 14 14 C 1.38313 * 120.05016 * 0.02570 * 13 12 11 15 15 Br 1.89101 * 119.95779 * 179.97438 * 14 13 12 16 16 C 1.38374 * 120.09164 * 359.97438 * 14 13 12 17 17 C 1.50695 * 119.97838 * 180.02562 * 16 14 13 18 18 O 1.42907 * 109.47010 * 196.31631 * 17 16 14 19 19 Si 1.86301 * 109.47061 * 76.31534 * 17 16 14 20 20 H 1.48504 * 109.47045 * 65.41642 * 19 17 16 21 21 H 1.48498 * 109.47093 * 185.41328 * 19 17 16 22 22 H 1.48498 * 109.47147 * 305.41532 * 19 17 16 23 23 C 1.38121 * 120.04366 * 359.95994 * 16 14 13 24 24 C 1.38239 * 119.99554 * 0.25590 * 8 7 6 25 25 C 1.38231 * 120.00001 * 359.49409 * 24 8 7 26 26 H 1.09002 * 109.46902 * 299.99832 * 1 2 3 27 27 H 1.09001 * 109.46749 * 59.99542 * 1 2 3 28 28 H 1.08995 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46923 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47002 * 299.99942 * 3 2 1 31 31 H 1.09002 * 109.47109 * 60.00294 * 3 2 1 32 32 H 1.09002 * 109.46699 * 299.99912 * 4 2 1 33 33 H 1.08996 * 109.47116 * 60.00089 * 4 2 1 34 34 H 1.09004 * 109.46917 * 180.02562 * 4 2 1 35 35 H 1.08004 * 119.99770 * 359.97438 * 6 5 2 36 36 H 1.08006 * 120.00122 * 179.97438 * 7 6 5 37 37 H 1.08994 * 109.47261 * 329.99801 * 9 8 7 38 38 H 1.09005 * 109.46509 * 210.00101 * 9 8 7 39 39 H 1.07997 * 120.02371 * 359.74350 * 12 11 10 40 40 H 1.08005 * 119.97317 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.47037 * 316.31494 * 17 16 14 42 42 H 0.96698 * 113.99995 * 180.02562 * 18 17 16 43 43 H 1.07993 * 120.02679 * 180.02562 * 23 16 14 44 44 H 1.07996 * 119.99527 * 179.72243 * 24 8 7 45 45 H 1.08001 * 120.00156 * 180.22826 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8807 1.5251 6 6 2.7161 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4067 -2.1841 3.7827 9 6 3.9079 -2.8948 5.0134 10 8 5.3370 -2.8958 5.0141 11 6 5.9530 -3.5012 6.0635 12 6 5.1975 -4.0817 7.0716 13 6 5.8258 -4.7016 8.1346 14 6 7.2070 -4.7433 8.1942 15 35 8.0642 -5.5919 9.6506 16 6 7.9626 -4.1649 7.1895 17 6 9.4673 -4.2123 7.2568 18 8 10.0150 -3.2524 6.3508 19 14 10.0565 -5.9162 6.7873 20 1 9.7271 -6.1789 5.3633 21 1 11.5265 -6.0019 6.9792 22 1 9.3855 -6.9258 7.6450 23 6 7.3385 -3.5453 6.1245 24 6 3.1718 -0.8223 3.8183 25 6 2.7165 -0.1697 2.6880 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.5741 1.7565 0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1207 2.2703 0.8900 32 1 2.1206 -1.9058 -1.5212 33 1 2.1206 -0.3643 -2.4111 34 1 3.5740 -0.8786 -1.5210 35 1 2.5357 -2.7987 0.5824 36 1 3.3560 -3.9596 2.5930 37 1 3.5438 -3.9222 5.0134 38 1 3.5445 -2.3806 5.9032 39 1 4.1190 -4.0493 7.0255 40 1 5.2379 -5.1533 8.9200 41 1 9.7931 -3.9818 8.2711 42 1 10.9816 -3.2277 6.3410 43 1 7.9284 -3.0943 5.3403 44 1 3.3475 -0.2678 4.7282 45 1 2.5364 0.8949 2.7148 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_7425986_9403676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:12:20 Heat of formation + Delta-G solvation = -54.593139 kcal Electronic energy + Delta-G solvation = -24838.347233 eV Core-core repulsion = 21183.811610 eV Total energy + Delta-G solvation = -3654.535624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 394.051 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.50435 -40.12922 -38.99506 -37.45401 -33.55367 -32.87862 -32.44629 -31.89065 -29.93282 -29.40817 -28.30014 -28.27210 -27.51122 -26.67663 -23.61383 -23.49661 -22.70877 -21.65729 -19.19928 -18.62727 -17.81257 -17.14382 -16.92395 -16.79210 -16.44056 -16.00955 -15.73593 -15.58616 -14.89923 -14.80045 -14.59512 -14.34863 -14.10865 -14.06893 -14.04364 -13.84357 -13.73134 -13.48665 -13.20215 -13.14312 -13.12260 -12.97168 -12.86848 -12.73580 -12.69377 -12.22119 -12.15276 -12.01226 -11.86659 -11.32389 -11.09521 -10.92770 -10.79629 -10.78246 -10.76326 -9.81665 -9.76157 -9.70032 -9.24124 -0.09515 0.10233 0.14087 0.51213 0.54281 1.09564 1.39038 1.46142 1.83074 1.89748 1.96227 2.01916 2.25559 2.46609 2.66293 2.99934 3.08883 3.51608 3.67080 3.78272 3.79980 4.02607 4.10448 4.16833 4.22920 4.24083 4.32021 4.35496 4.52311 4.70508 4.81980 4.84354 4.84599 4.88323 4.88901 4.89213 4.89753 4.90534 4.99333 5.08521 5.15083 5.17579 5.38615 5.41668 5.55713 5.58824 5.58908 5.67713 5.70174 6.11214 6.23687 6.72762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.127 2.873 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.373 4.373 6 C -0.104 4.104 7 C -0.122 4.122 8 C -0.105 4.105 9 C 0.096 3.904 10 O -0.320 6.320 11 C 0.140 3.860 12 C -0.205 4.205 13 C -0.043 4.043 14 C -0.144 4.144 15 Br -0.042 7.042 16 C -0.022 4.022 17 C -0.081 4.081 18 O -0.557 6.557 19 Si 0.943 3.057 20 H -0.273 1.273 21 H -0.231 1.231 22 H -0.231 1.231 23 C -0.144 4.144 24 C -0.122 4.122 25 C -0.104 4.104 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.139 0.861 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.100 0.900 42 H 0.403 0.597 43 H 0.139 0.861 44 H 0.128 0.872 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.972 0.511 -0.669 2.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.314 2.686 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.412 4.412 6 C -0.122 4.122 7 C -0.140 4.140 8 C -0.105 4.105 9 C 0.023 3.977 10 O -0.234 6.234 11 C 0.094 3.906 12 C -0.225 4.225 13 C -0.062 4.062 14 C -0.224 4.224 15 Br 0.043 6.957 16 C -0.024 4.024 17 C -0.190 4.190 18 O -0.366 6.366 19 Si 0.761 3.239 20 H -0.198 1.198 21 H -0.153 1.153 22 H -0.154 1.154 23 C -0.163 4.163 24 C -0.140 4.140 25 C -0.122 4.122 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.157 0.843 36 H 0.146 0.854 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.178 0.822 40 H 0.177 0.823 41 H 0.118 0.882 42 H 0.254 0.746 43 H 0.157 0.843 44 H 0.146 0.854 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.884 -0.464 -0.548 2.016 hybrid contribution 0.236 0.409 0.187 0.508 sum -1.647 -0.055 -0.361 1.687 Atomic orbital electron populations 1.26262 1.21342 1.04521 1.04628 0.77172 0.65322 0.64547 0.61555 1.26289 1.06330 1.19485 1.04905 1.26289 1.06327 1.08532 1.15863 1.28068 1.02358 0.99608 1.11195 1.21397 0.97385 0.95235 0.98189 1.21392 0.99139 1.00521 0.92955 1.19625 1.01390 0.94548 0.94924 1.21845 0.77392 1.01470 0.97039 1.86179 1.22395 1.72771 1.42089 1.19232 0.92226 0.91902 0.87244 1.21514 1.01609 1.03943 0.95403 1.21125 0.91794 0.95470 0.97838 1.21480 0.95548 1.08804 0.96540 1.96688 1.79493 1.78345 1.41188 1.19103 0.94762 0.95743 0.92766 1.24817 0.92157 1.04614 0.97443 1.86392 1.27696 1.59505 1.63020 0.85734 0.81995 0.75556 0.80579 1.19812 1.15317 1.15373 1.20205 0.91557 1.04020 1.00523 1.21393 0.99137 0.93777 0.99686 1.21400 0.97390 1.00755 0.92650 0.91325 0.90629 0.91331 0.91465 0.90600 0.90882 0.90889 0.90599 0.91467 0.84281 0.85415 0.89482 0.89508 0.82181 0.82327 0.88198 0.74643 0.84346 0.85416 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.72 8.65 113.37 0.98 2.70 16 2 Si 1.13 -6.09 12.32 68.60 0.85 -5.25 16 3 C -0.46 1.76 8.53 113.37 0.97 2.73 16 4 C -0.46 1.76 8.53 113.37 0.97 2.73 16 5 C -0.37 0.05 4.59 22.27 0.10 0.15 16 6 C -0.10 -0.12 9.29 22.27 0.21 0.09 16 7 C -0.12 -0.35 9.70 22.27 0.22 -0.14 16 8 C -0.10 -0.36 5.51 -19.86 -0.11 -0.47 16 9 C 0.10 0.10 4.87 71.24 0.35 0.45 16 10 O -0.32 -2.14 10.12 -92.55 -0.94 -3.07 16 11 C 0.14 0.82 6.69 22.50 0.15 0.97 16 12 C -0.21 -0.30 9.04 22.36 0.20 -0.10 16 13 C -0.04 -0.06 9.78 22.27 0.22 0.15 16 14 C -0.14 -0.58 5.96 22.32 0.13 -0.45 16 15 Br -0.04 -0.11 29.83 -20.37 -0.61 -0.72 16 16 C -0.02 -0.12 4.49 -19.86 -0.09 -0.21 16 17 C -0.08 -0.16 2.43 71.23 0.17 0.02 16 18 O -0.56 -0.80 11.51 -148.98 -1.71 -2.52 16 19 Si 0.94 1.68 26.65 68.60 1.83 3.51 16 20 H -0.27 -1.73 7.11 99.48 0.71 -1.03 16 21 H -0.23 0.07 7.11 99.48 0.71 0.77 16 22 H -0.23 -0.62 6.27 99.48 0.62 0.00 16 23 C -0.14 -1.09 9.30 22.37 0.21 -0.88 16 24 C -0.12 -0.36 9.70 22.27 0.22 -0.14 16 25 C -0.10 -0.12 9.29 22.27 0.21 0.09 16 26 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 27 H 0.07 -0.33 7.96 -2.39 -0.02 -0.34 16 28 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 29 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 30 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 31 H 0.07 -0.31 7.69 -2.39 -0.02 -0.33 16 32 H 0.07 -0.31 7.69 -2.39 -0.02 -0.33 16 33 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 34 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 35 H 0.14 -0.43 7.43 -2.91 -0.02 -0.45 16 36 H 0.13 0.04 8.06 -2.91 -0.02 0.02 16 37 H 0.09 -0.19 7.61 -2.39 -0.02 -0.21 16 38 H 0.09 -0.18 7.60 -2.38 -0.02 -0.20 16 39 H 0.16 -0.61 6.30 -2.91 -0.02 -0.63 16 40 H 0.16 -0.48 8.06 -2.91 -0.02 -0.50 16 41 H 0.10 -0.07 7.15 -2.39 -0.02 -0.09 16 42 H 0.40 -3.20 8.74 -74.06 -0.65 -3.84 16 43 H 0.14 1.24 7.16 -2.91 -0.02 1.22 16 44 H 0.13 0.05 8.06 -2.91 -0.02 0.03 16 45 H 0.14 -0.43 7.43 -2.91 -0.02 -0.45 16 Total: 0.00 -13.82 391.96 5.52 -8.30 By element: Atomic # 1 Polarization: -8.94 SS G_CDS: 1.01 Total: -7.93 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 5.10 Total: 7.68 kcal Atomic # 8 Polarization: -2.94 SS G_CDS: -2.65 Total: -5.59 kcal Atomic # 14 Polarization: -4.41 SS G_CDS: 2.67 Total: -1.74 kcal Atomic # 35 Polarization: -0.11 SS G_CDS: -0.61 Total: -0.72 kcal Total: -13.82 5.52 -8.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_7425986_9403676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.298 kcal (2) G-P(sol) polarization free energy of solvation -13.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds