Wall clock time and date at job start Tue Mar 9 2021 15:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47177 * 2 1 4 4 C 1.53005 * 109.47024 * 239.99495 * 2 1 3 5 5 Si 1.86295 * 109.46824 * 119.99999 * 2 1 3 6 6 C 1.86303 * 109.47266 * 299.99592 * 5 2 1 7 7 C 1.86298 * 109.47104 * 180.02562 * 5 2 1 8 8 O 1.63105 * 109.47576 * 59.99815 * 5 2 1 9 9 C 1.42901 * 114.00137 * 179.97438 * 8 5 2 10 10 C 1.52996 * 109.46914 * 180.02562 * 9 8 5 11 11 O 1.42898 * 109.47443 * 65.00015 * 10 9 8 12 12 C 1.42899 * 114.00196 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.47054 * 180.02562 * 12 11 10 14 14 O 1.42892 * 109.47066 * 65.00036 * 13 12 11 15 15 C 1.35924 * 117.00005 * 180.02562 * 14 13 12 16 16 C 1.38641 * 120.05203 * 359.97438 * 15 14 13 17 17 C 1.38309 * 119.94781 * 180.02562 * 16 15 14 18 18 Cl 1.73604 * 119.97657 * 179.97438 * 17 16 15 19 19 C 1.38348 * 120.04859 * 359.74713 * 17 16 15 20 20 C 1.50696 * 119.95032 * 180.27838 * 19 17 16 21 21 O 1.42902 * 109.47085 * 196.36426 * 20 19 17 22 22 Si 1.86296 * 109.47325 * 76.36235 * 20 19 17 23 23 H 1.48503 * 109.46825 * 305.22735 * 22 20 19 24 24 H 1.48500 * 109.47273 * 65.22984 * 22 20 19 25 25 H 1.48501 * 109.47025 * 185.22852 * 22 20 19 26 26 C 1.38280 * 120.10222 * 0.50709 * 19 17 16 27 27 C 1.38215 * 120.05760 * 359.49243 * 26 19 17 28 28 Cl 1.73604 * 120.02607 * 180.27620 * 27 26 19 29 29 H 1.08995 * 109.47309 * 300.00447 * 1 2 3 30 30 H 1.08997 * 109.46993 * 60.00196 * 1 2 3 31 31 H 1.08997 * 109.47377 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47250 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47416 * 299.99760 * 3 2 1 34 34 H 1.08995 * 109.47366 * 59.99588 * 3 2 1 35 35 H 1.08994 * 109.47115 * 300.00353 * 4 2 1 36 36 H 1.09003 * 109.46808 * 60.00706 * 4 2 1 37 37 H 1.08995 * 109.47001 * 179.97438 * 4 2 1 38 38 H 1.09003 * 109.47166 * 179.97438 * 6 5 2 39 39 H 1.08993 * 109.47114 * 300.00810 * 6 5 2 40 40 H 1.09005 * 109.46837 * 60.00505 * 6 5 2 41 41 H 1.09004 * 109.46990 * 299.99724 * 7 5 2 42 42 H 1.08994 * 109.47359 * 59.99527 * 7 5 2 43 43 H 1.09003 * 109.47717 * 179.97438 * 7 5 2 44 44 H 1.08997 * 109.46953 * 60.00170 * 9 8 5 45 45 H 1.08997 * 109.47164 * 300.00446 * 9 8 5 46 46 H 1.09000 * 109.47162 * 304.99824 * 10 9 8 47 47 H 1.08998 * 109.47114 * 185.00113 * 10 9 8 48 48 H 1.09003 * 109.47322 * 60.00078 * 12 11 10 49 49 H 1.09000 * 109.47038 * 300.00299 * 12 11 10 50 50 H 1.09002 * 109.46892 * 304.99902 * 13 12 11 51 51 H 1.08994 * 109.46742 * 185.00190 * 13 12 11 52 52 H 1.08006 * 120.02859 * 359.97438 * 16 15 14 53 53 H 1.09001 * 109.46719 * 316.35927 * 20 19 17 54 54 H 0.96709 * 113.99903 * 179.97438 * 21 20 19 55 55 H 1.07999 * 119.96912 * 179.77107 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 14 2.1509 -0.8782 1.5211 6 6 1.5300 0.0001 3.0423 7 6 4.0139 -0.8776 1.5216 8 8 1.6072 -2.4160 1.5212 9 6 2.0293 -3.1817 2.6516 10 6 1.4644 -4.5996 2.5467 11 8 2.0328 -5.2562 1.4118 12 6 1.5687 -6.5942 1.2215 13 6 2.2402 -7.1960 -0.0146 14 8 3.6456 -7.3125 0.2160 15 6 4.3952 -7.8327 -0.7914 16 6 3.7907 -8.2230 -1.9765 17 6 4.5554 -8.7525 -3.0000 18 17 3.7991 -9.2421 -4.4840 19 6 5.9234 -8.8879 -2.8439 20 6 6.7554 -9.4593 -3.9630 21 8 8.0318 -9.8524 -3.4547 22 14 6.9849 -8.1693 -5.2873 23 1 5.6574 -7.6693 -5.7265 24 1 7.7846 -7.0411 -4.7463 25 1 7.6956 -8.7694 -6.4450 26 6 6.5278 -8.5041 -1.6609 27 6 5.7677 -7.9745 -0.6352 28 17 6.5284 -7.4863 0.8470 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2492 36 1 1.6768 -0.2075 -2.1392 37 1 3.1300 -0.7210 -1.2494 38 1 1.8929 -0.5141 3.9323 39 1 1.8933 1.0277 3.0422 40 1 0.4400 0.0001 3.0423 41 1 4.3777 -1.3912 0.6316 42 1 4.3769 0.1501 1.5218 43 1 4.3773 -1.3910 2.4118 44 1 1.6652 -2.7118 3.5651 45 1 3.1182 -3.2255 2.6746 46 1 0.3813 -4.5518 2.4341 47 1 1.7115 -5.1569 3.4502 48 1 0.4877 -6.5874 1.0811 49 1 1.8175 -7.1931 2.0976 50 1 2.0655 -6.5490 -0.8742 51 1 1.8212 -8.1828 -0.2115 52 1 2.7232 -8.1145 -2.1000 53 1 6.2494 -10.3275 -4.3851 54 1 8.6214 -10.2304 -4.1216 55 1 7.5954 -8.6142 -1.5400 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_7874536_16896868.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:14:10 Heat of formation + Delta-G solvation = -198.808992 kcal Electronic energy + Delta-G solvation = -34727.064910 eV Core-core repulsion = 29939.883738 eV Total energy + Delta-G solvation = -4787.181172 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 424.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.54885 -39.68254 -38.95977 -37.85050 -37.71964 -37.38287 -36.93690 -36.82768 -32.64249 -31.95053 -31.34181 -29.74133 -29.20867 -29.06591 -27.84232 -27.38605 -26.62454 -24.88319 -23.44973 -23.26614 -22.36229 -20.41887 -19.70654 -18.72437 -18.13758 -17.94827 -17.52782 -17.14041 -16.77435 -16.59539 -16.39296 -16.18337 -16.06551 -15.73355 -15.47733 -15.15067 -14.97852 -14.86209 -14.77039 -14.69364 -14.45561 -14.29395 -13.96897 -13.80406 -13.66180 -13.53699 -13.38738 -13.25110 -13.18446 -12.96070 -12.94039 -12.91667 -12.70316 -12.60807 -12.42217 -12.40169 -12.38574 -12.19637 -12.04090 -11.89204 -11.78694 -11.73246 -11.68089 -11.66065 -11.49649 -11.18756 -10.61068 -10.54059 -10.30046 -10.05109 -9.97988 -9.15185 -0.30181 -0.06289 0.78498 1.06116 1.14791 1.41297 1.48310 1.54510 1.80112 1.91635 1.96218 2.13457 2.26862 2.49611 2.69783 3.08000 3.46567 3.69517 3.73706 3.91598 4.09074 4.11727 4.12275 4.12551 4.17858 4.24066 4.29585 4.34046 4.41687 4.45126 4.48119 4.49846 4.59623 4.62950 4.67442 4.71205 4.73645 4.74275 4.78432 4.79268 4.81073 4.83181 4.84317 4.99392 5.00056 5.08532 5.09097 5.19915 5.26949 5.33231 5.40386 5.43778 5.53071 5.58649 5.63648 6.07688 6.30377 6.77437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.381 4.381 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.312 2.688 6 C -0.513 4.513 7 C -0.520 4.520 8 O -0.634 6.634 9 C 0.074 3.926 10 C 0.055 3.945 11 O -0.399 6.399 12 C 0.059 3.941 13 C 0.049 3.951 14 O -0.304 6.304 15 C 0.148 3.852 16 C -0.186 4.186 17 C 0.003 3.997 18 Cl -0.044 7.044 19 C -0.108 4.108 20 C -0.066 4.066 21 O -0.556 6.556 22 Si 0.945 3.055 23 H -0.245 1.245 24 H -0.272 1.272 25 H -0.234 1.234 26 C -0.043 4.043 27 C -0.081 4.081 28 Cl -0.054 7.054 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.096 0.904 49 H 0.066 0.934 50 H 0.078 0.922 51 H 0.107 0.893 52 H 0.171 0.829 53 H 0.100 0.900 54 H 0.404 0.596 55 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 -1.759 0.262 3.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.424 4.424 3 C -0.197 4.197 4 C -0.192 4.192 5 Si 1.442 2.558 6 C -0.616 4.616 7 C -0.621 4.621 8 O -0.594 6.594 9 C -0.001 4.001 10 C -0.022 4.022 11 O -0.319 6.319 12 C -0.017 4.017 13 C -0.026 4.026 14 O -0.217 6.217 15 C 0.101 3.899 16 C -0.205 4.205 17 C -0.025 4.025 18 Cl -0.015 7.015 19 C -0.110 4.110 20 C -0.175 4.175 21 O -0.366 6.366 22 Si 0.765 3.235 23 H -0.168 1.168 24 H -0.197 1.197 25 H -0.157 1.157 26 C -0.061 4.061 27 C -0.108 4.108 28 Cl -0.025 7.025 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.114 0.886 49 H 0.084 0.916 50 H 0.096 0.904 51 H 0.124 0.876 52 H 0.188 0.812 53 H 0.118 0.882 54 H 0.256 0.744 55 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.872 -0.951 0.081 3.026 hybrid contribution 0.241 -0.114 -0.079 0.278 sum -2.631 -1.065 0.002 2.838 Atomic orbital electron populations 1.21521 0.93961 1.01763 1.01941 1.25885 1.00613 1.02934 1.12930 1.21599 1.01111 0.94697 1.02341 1.21514 1.00691 0.99950 0.97085 0.76272 0.61977 0.53071 0.64500 1.27032 1.07041 1.09743 1.17736 1.27170 1.26255 1.04625 1.04066 1.85383 1.79164 1.46448 1.48370 1.22299 0.99235 0.90831 0.87705 1.22810 0.98426 0.92001 0.88916 1.87993 1.68553 1.26755 1.48595 1.22679 0.98509 0.83417 0.97100 1.23287 0.77382 1.02264 0.99624 1.86249 1.21387 1.76932 1.37119 1.18570 0.89567 0.93742 0.88062 1.21167 1.02206 1.05432 0.91708 1.20455 0.91754 1.00867 0.89375 1.98393 1.81385 1.89655 1.32054 1.19182 0.91680 1.03640 0.96455 1.24529 0.86547 1.06233 1.00226 1.86358 1.24798 1.84621 1.40799 0.85746 0.82061 0.78404 0.77257 1.16818 1.19670 1.15697 1.20743 1.01390 0.94319 0.89675 1.20449 0.90574 1.08347 0.91444 1.98381 1.81061 1.90218 1.32879 0.91830 0.93319 0.92574 0.92150 0.93054 0.91551 0.92800 0.93209 0.92685 0.90832 0.90373 0.90760 0.91988 0.90469 0.91375 0.88883 0.92140 0.91440 0.90421 0.88611 0.91586 0.90372 0.87558 0.81192 0.88192 0.74444 0.82142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.15 7.85 71.98 0.56 0.41 16 2 C -0.38 -0.43 0.53 -10.79 -0.01 -0.43 16 3 C -0.14 0.00 7.85 71.98 0.56 0.56 16 4 C -0.14 -0.42 7.85 71.98 0.56 0.14 16 5 Si 1.31 -0.67 8.45 68.60 0.58 -0.09 16 6 C -0.51 0.94 8.50 113.37 0.96 1.91 16 7 C -0.52 -0.86 8.50 113.37 0.96 0.11 16 8 O -0.63 -1.60 8.52 -144.34 -1.23 -2.83 16 9 C 0.07 -0.04 5.51 71.98 0.40 0.36 16 10 C 0.05 -0.05 6.32 71.98 0.45 0.40 16 11 O -0.40 -1.58 10.27 -135.05 -1.39 -2.96 16 12 C 0.06 -0.12 6.32 71.98 0.45 0.33 16 13 C 0.05 -0.08 5.12 71.98 0.37 0.29 16 14 O -0.30 -1.54 9.56 -88.06 -0.84 -2.38 16 15 C 0.15 0.76 6.68 22.52 0.15 0.91 16 16 C -0.19 -0.32 8.82 22.38 0.20 -0.13 16 17 C 0.00 0.01 6.04 22.31 0.13 0.14 16 18 Cl -0.04 -0.04 25.77 -2.72 -0.07 -0.11 16 19 C -0.11 -0.36 4.50 -19.83 -0.09 -0.45 16 20 C -0.07 0.05 2.44 71.23 0.17 0.22 16 21 O -0.56 0.95 11.50 -148.98 -1.71 -0.76 16 22 Si 0.94 0.20 26.86 68.60 1.84 2.04 16 23 H -0.25 -0.43 6.54 99.48 0.65 0.22 16 24 H -0.27 -1.29 7.11 99.48 0.71 -0.58 16 25 H -0.23 0.37 7.11 99.48 0.71 1.07 16 26 C -0.04 -0.22 9.14 22.27 0.20 -0.01 16 27 C -0.08 -0.55 6.33 22.41 0.14 -0.40 16 28 Cl -0.05 -0.42 28.50 -2.72 -0.08 -0.50 16 29 H 0.06 -0.06 7.79 -2.39 -0.02 -0.07 16 30 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.06 0.10 7.97 -2.39 -0.02 0.08 16 32 H 0.06 -0.05 7.79 -2.38 -0.02 -0.07 16 33 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.07 -0.14 7.79 -2.39 -0.02 -0.15 16 35 H 0.05 0.23 7.96 -2.39 -0.02 0.22 16 36 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.05 0.15 7.79 -2.39 -0.02 0.13 16 38 H 0.07 -0.23 7.48 -2.39 -0.02 -0.24 16 39 H 0.08 -0.18 7.79 -2.39 -0.02 -0.20 16 40 H 0.07 -0.14 7.79 -2.38 -0.02 -0.15 16 41 H 0.06 0.25 7.79 -2.38 -0.02 0.23 16 42 H 0.08 0.03 7.79 -2.39 -0.02 0.01 16 43 H 0.07 0.08 7.48 -2.39 -0.02 0.06 16 44 H 0.09 -0.55 7.21 -2.39 -0.02 -0.57 16 45 H 0.06 -0.01 7.21 -2.39 -0.02 -0.03 16 46 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 47 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 48 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 49 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 50 H 0.08 -0.16 7.66 -2.39 -0.02 -0.17 16 51 H 0.11 -0.75 7.66 -2.39 -0.02 -0.77 16 52 H 0.17 -0.55 6.30 -2.91 -0.02 -0.57 16 53 H 0.10 -0.38 7.34 -2.39 -0.02 -0.40 16 54 H 0.40 -4.33 8.74 -74.05 -0.65 -4.98 16 55 H 0.16 0.67 7.15 -2.91 -0.02 0.65 16 Total: 0.00 -15.02 467.98 4.24 -10.79 By element: Atomic # 1 Polarization: -8.48 SS G_CDS: 0.93 Total: -7.55 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 6.20 Total: 4.36 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -5.17 Total: -8.94 kcal Atomic # 14 Polarization: -0.47 SS G_CDS: 2.42 Total: 1.95 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.15 Total: -0.61 kcal Total: -15.02 4.24 -10.79 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_7874536_16896868.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.021 kcal (2) G-P(sol) polarization free energy of solvation -15.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds