Wall clock time and date at job start Tue Mar 9 2021 15:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00016 * 2 1 4 4 H 1.09002 * 112.90854 * 341.25072 * 3 2 1 5 5 C 1.53780 * 113.61369 * 112.50531 * 3 2 1 6 6 C 1.53779 * 87.08028 * 139.97893 * 5 3 2 7 7 H 1.08996 * 113.61326 * 89.12099 * 6 5 3 8 8 N 1.46504 * 113.61083 * 220.01652 * 6 5 3 9 9 C 1.46493 * 120.00282 * 43.46899 * 8 6 5 10 10 S 1.65603 * 119.99754 * 223.45975 * 8 6 5 11 11 O 1.42100 * 106.40312 * 203.54116 * 10 8 6 12 12 O 1.42103 * 106.40416 * 336.46658 * 10 8 6 13 13 C 1.76207 * 107.21571 * 90.00544 * 10 8 6 14 14 C 1.33390 * 122.53698 * 269.70831 * 13 10 8 15 15 S 1.75881 * 109.58938 * 179.90448 * 14 13 10 16 16 C 1.75885 * 90.97250 * 0.30164 * 15 14 13 17 17 C 1.50698 * 125.20145 * 179.79507 * 16 15 14 18 18 O 1.42907 * 109.46948 * 245.04217 * 17 16 15 19 19 Si 1.86302 * 109.47281 * 5.03946 * 17 16 15 20 20 C 1.33385 * 109.59046 * 359.83110 * 16 15 14 21 21 C 1.53772 * 87.08271 * 334.56746 * 6 5 3 22 22 H 1.09003 * 109.47352 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47246 * 299.99725 * 1 2 3 24 24 H 1.09000 * 109.47482 * 60.00048 * 1 2 3 25 25 H 1.08999 * 113.61320 * 254.52547 * 5 3 2 26 26 H 1.09000 * 113.61513 * 25.42955 * 5 3 2 27 27 H 1.08996 * 109.47443 * 92.20702 * 9 8 6 28 28 H 1.08998 * 109.47389 * 212.21640 * 9 8 6 29 29 H 1.09007 * 109.46794 * 332.20913 * 9 8 6 30 30 H 1.08001 * 125.20501 * 0.02681 * 14 13 10 31 31 H 1.08993 * 109.47329 * 125.04328 * 17 16 15 32 32 H 0.96701 * 114.00249 * 60.00166 * 18 17 16 33 33 H 1.48495 * 110.00002 * 58.68206 * 19 17 16 34 34 H 1.48507 * 109.99870 * 180.02562 * 19 17 16 35 35 H 1.07999 * 122.53612 * 179.97438 * 20 16 15 36 36 H 1.09007 * 113.61781 * 270.88403 * 21 6 5 37 37 H 1.08997 * 113.61970 * 139.98080 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3142 2.0797 -0.3227 5 6 2.7535 1.6488 1.3017 6 6 3.8227 2.3180 0.4221 7 1 3.6223 3.3691 0.2150 8 7 5.1935 2.0784 0.8803 9 6 5.5973 0.7386 1.3138 10 16 6.2866 3.3221 0.9079 11 8 7.5748 2.7257 0.8442 12 8 5.8268 4.2815 -0.0342 13 6 6.1691 4.0846 2.4921 14 6 5.3390 5.0987 2.7405 15 16 5.4969 5.5920 4.4213 16 6 6.7242 4.3628 4.6980 17 6 7.4295 4.1186 6.0072 18 8 8.8196 4.4163 5.8620 19 14 6.6940 5.2138 7.3226 20 6 6.9356 3.6804 3.5716 21 6 3.3755 1.3718 -0.7045 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 2.2141 2.3476 1.9411 26 1 3.1167 0.7739 1.8410 27 1 6.0157 0.1936 0.4677 28 1 6.3481 0.8218 2.0996 29 1 4.7284 0.2034 1.6969 30 1 4.6705 5.5469 2.0203 31 1 7.3097 3.0743 6.2951 32 1 9.0014 5.3310 5.6063 33 1 5.2417 4.9363 7.4609 34 1 7.3814 4.9829 8.6185 35 1 7.6509 2.8739 3.5066 36 1 3.9088 0.4211 -0.7139 37 1 3.3383 1.8470 -1.6848 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10122446_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:36:49 Heat of formation + Delta-G solvation = -69.060876 kcal Electronic energy + Delta-G solvation = -23351.723979 eV Core-core repulsion = 19737.476953 eV Total energy + Delta-G solvation = -3614.247026 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.063 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.85420 -39.52210 -38.28380 -37.85651 -37.58657 -36.84649 -34.74111 -31.87755 -28.36318 -27.53135 -27.24357 -26.79954 -25.00881 -24.43633 -21.38678 -20.70963 -19.93352 -19.27954 -18.76781 -17.98063 -17.76642 -17.67939 -17.04099 -16.43004 -16.26605 -16.18296 -15.59727 -15.43489 -15.24617 -15.00158 -14.81341 -14.33914 -14.16647 -13.99324 -13.86645 -13.65149 -13.23250 -13.17061 -13.13098 -12.92462 -12.78987 -12.74026 -12.52698 -12.25123 -12.18907 -11.90885 -11.85098 -11.64871 -10.73773 -10.53367 -10.27617 -10.10224 -9.90243 -5.29607 -0.80737 -0.51328 0.26799 0.52989 0.95290 1.09316 1.45923 1.77061 1.90931 2.69235 2.80002 3.16301 3.29685 3.34037 3.40468 3.55934 3.67367 3.70351 3.76756 3.82682 4.12060 4.16520 4.29302 4.34052 4.39115 4.42465 4.53306 4.56477 4.62174 4.70637 4.71712 4.79641 4.85653 4.91159 4.92651 5.02654 5.22768 5.43290 6.17872 6.37538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.063 3.937 4 H 0.093 0.907 5 C -0.168 4.168 6 C 0.124 3.876 7 H 0.126 0.874 8 N -0.983 5.983 9 C 0.086 3.914 10 S 2.704 3.296 11 O -0.945 6.945 12 O -0.951 6.951 13 C -0.687 4.687 14 C -0.084 4.084 15 S 0.156 5.844 16 C -0.228 4.228 17 C -0.027 4.027 18 O -0.532 6.532 19 Si 0.657 3.343 20 C -0.043 4.043 21 C -0.145 4.145 22 H 0.087 0.913 23 H 0.042 0.958 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.185 0.815 31 H 0.126 0.874 32 H 0.382 0.618 33 H -0.238 1.238 34 H -0.231 1.231 35 H 0.156 0.844 36 H 0.100 0.900 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 1.796 2.139 5.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.293 6.293 3 C 0.004 3.996 4 H 0.111 0.889 5 C -0.207 4.207 6 C 0.017 3.983 7 H 0.144 0.856 8 N -0.821 5.821 9 C -0.059 4.059 10 S 2.792 3.208 11 O -0.935 6.935 12 O -0.942 6.942 13 C -0.786 4.786 14 C -0.223 4.223 15 S 0.420 5.580 16 C -0.346 4.346 17 C -0.140 4.140 18 O -0.338 6.338 19 Si 0.556 3.444 20 C -0.072 4.072 21 C -0.184 4.184 22 H 0.105 0.895 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.120 0.880 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.202 0.798 31 H 0.143 0.857 32 H 0.229 0.771 33 H -0.162 1.162 34 H -0.154 1.154 35 H 0.174 0.826 36 H 0.119 0.881 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.181 2.388 3.383 6.633 hybrid contribution 0.095 -1.200 -0.455 1.287 sum -5.086 1.188 2.929 5.988 Atomic orbital electron populations 1.22827 0.80808 1.03064 1.00084 1.87953 1.19933 1.26840 1.94538 1.23484 0.93911 0.85864 0.96347 0.88920 1.24007 0.96970 1.01869 0.97886 1.22199 0.79770 1.00449 0.95835 0.85605 1.57382 1.23395 1.22187 1.79093 1.21594 1.01111 0.82676 1.00492 1.01880 0.73015 0.72638 0.73275 1.93608 1.37131 1.76614 1.86128 1.93592 1.81694 1.60791 1.58077 1.30145 1.10062 1.13240 1.25147 1.25880 0.99377 0.97035 1.00036 1.84316 1.35620 1.33455 1.04646 1.25066 1.05233 1.03089 1.01224 1.24455 0.85373 1.06753 0.97447 1.86550 1.20562 1.34767 1.91894 0.95039 0.80693 0.88146 0.80558 1.19607 0.97906 1.00187 0.89491 1.23675 0.95161 1.01011 0.98600 0.89494 0.93936 0.93781 0.90516 0.88032 0.91607 0.90776 0.90029 0.79808 0.85708 0.77054 1.16246 1.15375 0.82644 0.88137 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.85 101.05 1.10 1.06 16 2 O -0.37 -0.31 10.71 -35.23 -0.38 -0.69 16 3 C 0.06 -0.07 4.31 -25.92 -0.11 -0.18 16 4 H 0.09 -0.24 7.87 -51.93 -0.41 -0.65 16 5 C -0.17 0.32 7.41 -25.92 -0.19 0.12 16 6 C 0.12 -0.16 4.19 -67.12 -0.28 -0.44 16 7 H 0.13 -0.28 7.28 -51.93 -0.38 -0.66 16 8 N -0.98 0.41 3.40 -113.75 -0.39 0.02 16 9 C 0.09 -0.12 9.28 59.84 0.56 0.43 16 10 S 2.70 4.75 5.71 -107.50 -0.61 4.14 16 11 O -0.94 -4.47 16.75 -57.17 -0.96 -5.42 16 12 O -0.95 -3.58 16.37 -57.17 -0.94 -4.51 16 13 C -0.69 -0.39 5.89 -41.21 -0.24 -0.64 16 14 C -0.08 0.07 10.70 29.04 0.31 0.38 16 15 S 0.16 -0.21 20.60 -107.50 -2.21 -2.43 16 16 C -0.23 0.04 5.70 -36.01 -0.21 -0.16 16 17 C -0.03 0.02 2.96 36.00 0.11 0.13 16 18 O -0.53 0.03 12.88 -35.23 -0.45 -0.43 16 19 Si 0.66 -1.04 30.98 -169.99 -5.27 -6.30 16 20 C -0.04 -0.03 9.59 -41.21 -0.40 -0.43 16 21 C -0.14 0.13 7.50 -25.92 -0.19 -0.06 16 22 H 0.09 -0.17 8.14 -51.93 -0.42 -0.60 16 23 H 0.04 -0.09 8.14 -51.93 -0.42 -0.52 16 24 H 0.04 -0.09 8.14 -51.93 -0.42 -0.52 16 25 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 26 H 0.10 -0.16 5.96 -51.93 -0.31 -0.47 16 27 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 28 H 0.07 -0.15 7.87 -51.93 -0.41 -0.56 16 29 H 0.08 -0.21 5.78 -51.92 -0.30 -0.51 16 30 H 0.18 -0.54 8.00 -52.49 -0.42 -0.96 16 31 H 0.13 -0.11 7.96 -51.93 -0.41 -0.53 16 32 H 0.38 -1.44 8.70 45.56 0.40 -1.05 16 33 H -0.24 -0.07 7.11 56.52 0.40 0.33 16 34 H -0.23 -0.25 7.11 56.52 0.40 0.15 16 35 H 0.16 0.10 7.96 -52.49 -0.42 -0.31 16 36 H 0.10 -0.04 7.47 -51.92 -0.39 -0.43 16 37 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 LS Contribution 333.71 15.07 5.03 5.03 Total: 0.00 -8.85 333.71 -10.51 -19.36 By element: Atomic # 1 Polarization: -4.19 SS G_CDS: -4.78 Total: -8.97 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 0.45 Total: 0.20 kcal Atomic # 7 Polarization: 0.41 SS G_CDS: -0.39 Total: 0.02 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -2.73 Total: -11.05 kcal Atomic # 14 Polarization: -1.04 SS G_CDS: -5.27 Total: -6.30 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -2.83 Total: 1.71 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -8.85 -10.51 -19.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10122446_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.699 kcal (2) G-P(sol) polarization free energy of solvation -8.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds