Wall clock time and date at job start Tue Mar 9 2021 15:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.47010 * 2 1 4 4 C 1.50703 * 109.47424 * 120.00195 * 2 1 3 5 5 C 1.33385 * 125.20459 * 65.28377 * 4 2 1 6 6 C 1.38426 * 114.92449 * 180.21035 * 5 4 2 7 7 S 1.76199 * 122.54285 * 179.76269 * 6 5 4 8 8 O 1.42101 * 106.40207 * 23.27645 * 7 6 5 9 9 O 1.42094 * 106.39983 * 156.19709 * 7 6 5 10 10 N 1.65598 * 107.21633 * 269.73973 * 7 6 5 11 11 C 1.46495 * 120.00593 * 64.99862 * 10 7 6 12 12 H 1.09005 * 112.84780 * 344.66461 * 11 10 7 13 13 C 1.53777 * 113.61657 * 115.86308 * 11 10 7 14 14 C 1.54049 * 86.98589 * 89.16459 * 13 11 10 15 15 H 1.09001 * 113.60792 * 270.88189 * 14 13 11 16 16 C 1.50701 * 113.69442 * 139.99432 * 14 13 11 17 17 C 1.38215 * 119.97173 * 142.46922 * 16 14 13 18 18 C 1.38239 * 120.05174 * 179.97438 * 17 16 14 19 19 C 1.38407 * 119.98482 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.02682 * 179.97438 * 19 18 17 21 21 C 1.38587 * 119.94005 * 359.97438 * 19 18 17 22 22 Cl 1.73603 * 120.02525 * 180.02562 * 21 19 18 23 23 C 1.38269 * 119.96723 * 322.18462 * 16 14 13 24 24 C 1.53776 * 87.07529 * 25.43415 * 14 13 11 25 25 C 1.33388 * 114.91713 * 359.49564 * 6 5 4 26 26 S 1.75885 * 109.59465 * 0.26814 * 25 6 5 27 27 H 0.96702 * 113.99856 * 299.99567 * 1 2 3 28 28 H 1.09002 * 109.46980 * 240.00394 * 2 1 3 29 29 H 1.48497 * 109.99942 * 178.68048 * 3 2 1 30 30 H 1.48492 * 110.00096 * 300.00179 * 3 2 1 31 31 H 1.08005 * 122.54122 * 359.97438 * 5 4 2 32 32 H 0.97004 * 119.99509 * 244.99913 * 10 7 6 33 33 H 1.09007 * 113.61809 * 203.67204 * 13 11 10 34 34 H 1.09002 * 113.61241 * 334.56654 * 13 11 10 35 35 H 1.08002 * 119.97530 * 359.97438 * 17 16 14 36 36 H 1.08001 * 120.00909 * 180.02562 * 18 17 16 37 37 H 1.07997 * 119.99018 * 0.03224 * 23 16 14 38 38 H 1.09007 * 113.60949 * 220.02302 * 24 14 13 39 39 H 1.09000 * 113.69295 * 89.13438 * 24 14 13 40 40 H 1.07996 * 125.20310 * 180.29185 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7581 -2.0063 1.4948 6 6 2.3057 -2.4359 2.6914 7 16 2.1895 -4.1057 3.2415 8 8 1.9844 -4.8977 2.0796 9 8 3.2721 -4.3086 4.1393 10 7 0.8054 -4.2299 4.1423 11 6 -0.5010 -4.0362 3.5084 12 1 -0.4303 -3.5627 2.5291 13 6 -1.3848 -5.2946 3.5218 14 6 -1.9146 -4.8090 4.8844 15 1 -1.3289 -5.1644 5.7323 16 6 -3.3957 -5.0177 5.0677 17 6 -3.8933 -5.3880 6.3029 18 6 -5.2518 -5.5794 6.4730 19 6 -6.1145 -5.4007 5.4055 20 9 -7.4422 -5.5880 5.5706 21 6 -5.6151 -5.0294 4.1672 22 17 -6.6952 -4.8041 2.8270 23 6 -4.2564 -4.8329 4.0014 24 6 -1.5441 -3.3865 4.4328 25 6 2.9327 -1.4910 3.3938 26 16 2.8425 0.0407 2.5340 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5138 -0.8900 29 1 3.5345 1.7703 0.0321 30 1 1.5614 2.4679 -1.2084 31 1 1.2274 -2.6694 0.8276 32 1 0.8598 -4.4308 5.0897 33 1 -2.1418 -5.3049 2.7376 34 1 -0.8193 -6.2247 3.5779 35 1 -3.2202 -5.5278 7.1359 36 1 -5.6398 -5.8683 7.4385 37 1 -3.8668 -4.5396 3.0378 38 1 -1.1071 -2.7771 5.2240 39 1 -2.3438 -2.8748 3.8973 40 1 3.4213 -1.6434 4.3447 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10156538_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:37:07 Heat of formation + Delta-G solvation = -62.671763 kcal Electronic energy + Delta-G solvation = -30411.496334 eV Core-core repulsion = 25774.050223 eV Total energy + Delta-G solvation = -4637.446111 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.015 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.02041 -41.22880 -39.47185 -39.22187 -38.35221 -37.56258 -37.50252 -37.01231 -34.19171 -31.96993 -31.79622 -31.17763 -27.19440 -26.57996 -26.01178 -24.91112 -24.22295 -22.83068 -21.43852 -20.66114 -20.03766 -19.19461 -18.95353 -18.60771 -17.81585 -17.69194 -17.57464 -17.11104 -16.88505 -16.82996 -16.32514 -16.00076 -15.82009 -15.42831 -15.12667 -14.91354 -14.78867 -14.51651 -14.29609 -14.26665 -14.13411 -14.08767 -13.93362 -13.76536 -13.36463 -13.32576 -13.23093 -13.14994 -12.92025 -12.61131 -12.52778 -12.52225 -12.19455 -12.06866 -11.80488 -11.71237 -11.56249 -11.16741 -10.64071 -10.46628 -10.15726 -10.00542 -9.80488 -9.54657 -5.19678 -0.77628 -0.43943 -0.08921 0.05111 0.36429 0.61319 0.96745 1.00640 1.18113 1.54556 1.85882 2.06047 2.36875 2.69697 3.06742 3.22123 3.44408 3.49158 3.62165 3.66320 3.68630 3.74638 3.93466 3.98584 4.07928 4.13794 4.15003 4.26739 4.29595 4.40059 4.50673 4.66114 4.76027 4.86869 4.89453 4.92717 4.93759 4.98192 5.06950 5.09904 5.13632 5.18189 5.41404 5.58087 5.69518 6.09585 6.68531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.030 4.030 3 Si 0.732 3.268 4 C -0.234 4.234 5 C -0.057 4.057 6 C -0.693 4.693 7 S 2.727 3.273 8 O -0.984 6.984 9 O -0.985 6.985 10 N -1.082 6.082 11 C 0.121 3.879 12 H 0.108 0.892 13 C -0.153 4.153 14 C -0.069 4.069 15 H 0.123 0.877 16 C -0.063 4.063 17 C -0.077 4.077 18 C -0.141 4.141 19 C 0.076 3.924 20 F -0.144 7.144 21 C -0.086 4.086 22 Cl -0.064 7.064 23 C -0.083 4.083 24 C -0.125 4.125 25 C -0.083 4.083 26 S 0.187 5.813 27 H 0.397 0.603 28 H 0.120 0.880 29 H -0.267 1.267 30 H -0.272 1.272 31 H 0.153 0.847 32 H 0.431 0.569 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.168 0.832 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.910 5.399 5.767 7.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.143 4.143 3 Si 0.635 3.365 4 C -0.352 4.352 5 C -0.086 4.086 6 C -0.794 4.794 7 S 2.815 3.185 8 O -0.973 6.973 9 O -0.975 6.975 10 N -0.844 5.844 11 C 0.013 3.987 12 H 0.126 0.874 13 C -0.193 4.193 14 C -0.087 4.087 15 H 0.141 0.859 16 C -0.064 4.064 17 C -0.095 4.095 18 C -0.159 4.159 19 C 0.056 3.944 20 F -0.123 7.123 21 C -0.113 4.113 22 Cl -0.035 7.035 23 C -0.101 4.101 24 C -0.164 4.164 25 C -0.222 4.222 26 S 0.451 5.549 27 H 0.248 0.752 28 H 0.137 0.863 29 H -0.193 1.193 30 H -0.197 1.197 31 H 0.170 0.830 32 H 0.269 0.731 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.185 0.815 36 H 0.177 0.823 37 H 0.175 0.825 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.438 6.569 4.576 8.369 hybrid contribution -1.202 -1.596 -0.498 2.059 sum 1.236 4.973 4.079 6.549 Atomic orbital electron populations 1.86519 1.16274 1.82050 1.50424 1.24507 0.85574 1.09380 0.94807 0.94316 0.79225 0.75140 0.87836 1.25151 1.08786 0.98366 1.02888 1.19678 0.98759 0.95235 0.94933 1.29807 1.16849 1.25893 1.06856 1.00784 0.72088 0.73081 0.72515 1.93577 1.85766 1.66859 1.51143 1.93575 1.52811 1.85705 1.65409 1.55027 1.18984 1.86976 1.23430 1.21757 0.81777 0.97774 0.97360 0.87360 1.23729 0.99407 0.98717 0.97425 1.21733 0.89720 0.98065 0.99226 0.85928 1.19932 0.96091 0.97892 0.92437 1.21408 0.94072 0.95842 0.98173 1.21436 0.93897 1.02118 0.98480 1.17841 0.78169 1.04190 0.94240 1.91510 1.31751 1.92930 1.96086 1.21196 0.93168 1.08492 0.88484 1.98402 1.64596 1.95604 1.44913 1.21042 0.89027 0.98735 1.01346 1.23437 0.97932 0.95417 0.99648 1.26219 0.97138 0.95610 1.03278 1.84287 1.49463 1.09746 1.11388 0.75215 0.86315 1.19333 1.19697 0.82965 0.73122 0.88083 0.90606 0.81472 0.82334 0.82538 0.88615 0.87768 0.77912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.94 12.88 -148.98 -1.92 0.02 16 2 C -0.03 0.10 2.96 71.24 0.21 0.31 16 3 Si 0.73 -3.05 30.98 68.60 2.13 -0.92 16 4 C -0.23 0.66 5.70 24.59 0.14 0.80 16 5 C -0.06 0.06 9.49 21.22 0.20 0.26 16 6 C -0.69 1.30 5.86 21.22 0.12 1.42 16 7 S 2.73 0.31 5.74 -56.49 -0.32 -0.01 16 8 O -0.98 -7.37 17.39 -128.00 -2.23 -9.60 16 9 O -0.98 -5.50 17.64 -128.00 -2.26 -7.76 16 10 N -1.08 8.12 5.73 -167.21 -0.96 7.16 16 11 C 0.12 -1.03 4.42 45.52 0.20 -0.83 16 12 H 0.11 -0.94 7.96 -2.38 -0.02 -0.96 16 13 C -0.15 1.14 7.27 31.21 0.23 1.36 16 14 C -0.07 0.70 3.81 -10.92 -0.04 0.66 16 15 H 0.12 -1.62 8.08 -2.39 -0.02 -1.64 16 16 C -0.06 0.40 5.29 -19.86 -0.11 0.30 16 17 C -0.08 0.52 9.70 22.26 0.22 0.73 16 18 C -0.14 0.37 10.03 22.31 0.22 0.59 16 19 C 0.08 0.22 7.28 22.39 0.16 0.39 16 20 F -0.14 -1.04 16.84 44.97 0.76 -0.28 16 21 C -0.09 -0.17 6.33 22.36 0.14 -0.03 16 22 Cl -0.06 -0.28 28.62 -2.72 -0.08 -0.35 16 23 C -0.08 0.27 8.38 22.29 0.19 0.46 16 24 C -0.13 1.45 7.32 31.12 0.23 1.68 16 25 C -0.08 0.38 10.70 66.72 0.71 1.09 16 26 S 0.19 -1.02 20.60 -56.49 -1.16 -2.18 16 27 H 0.40 -4.79 8.70 -74.06 -0.64 -5.44 16 28 H 0.12 -0.23 7.96 -2.39 -0.02 -0.25 16 29 H -0.27 -0.16 7.11 99.48 0.71 0.55 16 30 H -0.27 -0.66 7.11 99.48 0.71 0.04 16 31 H 0.15 -0.12 7.96 -2.91 -0.02 -0.14 16 32 H 0.43 -5.09 8.81 -96.74 -0.85 -5.94 16 33 H 0.10 -0.79 6.34 -2.38 -0.02 -0.81 16 34 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.17 -2.08 8.05 -2.91 -0.02 -2.10 16 36 H 0.16 -0.95 8.06 -2.91 -0.02 -0.97 16 37 H 0.16 -1.00 6.68 -2.91 -0.02 -1.02 16 38 H 0.10 -1.29 8.14 -2.38 -0.02 -1.31 16 39 H 0.10 -1.24 7.72 -2.39 -0.02 -1.26 16 40 H 0.20 -1.77 8.00 -2.91 -0.02 -1.79 16 Total: 0.00 -24.65 385.78 -3.54 -28.18 By element: Atomic # 1 Polarization: -23.14 SS G_CDS: -0.32 Total: -23.46 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 2.83 Total: 9.20 kcal Atomic # 7 Polarization: 8.12 SS G_CDS: -0.96 Total: 7.16 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -6.40 Total: -17.34 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.76 Total: -0.28 kcal Atomic # 14 Polarization: -3.05 SS G_CDS: 2.13 Total: -0.92 kcal Atomic # 16 Polarization: -0.71 SS G_CDS: -1.49 Total: -2.19 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.35 kcal Total: -24.65 -3.54 -28.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10156538_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.488 kcal (2) G-P(sol) polarization free energy of solvation -24.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds