Wall clock time and date at job start Tue Mar 9 2021 12:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86301 * 109.46963 * 2 1 4 4 C 1.50695 * 109.47650 * 120.00290 * 2 1 3 5 5 C 1.33393 * 125.19954 * 64.99736 * 4 2 1 6 6 C 1.38427 * 114.92011 * 179.97438 * 5 4 2 7 7 S 1.76199 * 122.54029 * 179.97438 * 6 5 4 8 8 O 1.42100 * 106.40198 * 203.54343 * 7 6 5 9 9 O 1.42096 * 106.39959 * 336.46408 * 7 6 5 10 10 N 1.65599 * 107.21658 * 90.00399 * 7 6 5 11 11 C 1.46501 * 120.00418 * 65.00023 * 10 7 6 12 12 H 1.09003 * 112.84245 * 344.66299 * 11 10 7 13 13 C 1.53778 * 113.61717 * 115.86208 * 11 10 7 14 14 C 1.53953 * 87.01984 * 139.95306 * 13 11 10 15 15 H 1.08994 * 113.53537 * 89.18972 * 14 13 11 16 16 C 1.53000 * 113.74272 * 220.05676 * 14 13 11 17 17 O 1.42906 * 109.47066 * 272.59877 * 16 14 13 18 18 C 1.53777 * 113.61556 * 213.47130 * 11 10 7 19 19 C 1.33392 * 114.91626 * 0.25028 * 6 5 4 20 20 S 1.75884 * 109.59877 * 359.63459 * 19 6 5 21 21 H 0.96700 * 113.99761 * 299.99154 * 1 2 3 22 22 H 1.09005 * 109.47157 * 240.00483 * 2 1 3 23 23 H 1.48496 * 110.00203 * 300.00551 * 3 2 1 24 24 H 1.48506 * 109.99818 * 61.32648 * 3 2 1 25 25 H 1.07993 * 122.54323 * 359.94958 * 5 4 2 26 26 H 0.97001 * 119.99869 * 244.99817 * 10 7 6 27 27 H 1.08997 * 113.61492 * 254.53467 * 13 11 10 28 28 H 1.08997 * 113.61289 * 25.43405 * 13 11 10 29 29 H 1.09001 * 109.47290 * 32.59526 * 16 14 13 30 30 H 1.08994 * 109.47314 * 152.59599 * 16 14 13 31 31 H 0.96699 * 113.99978 * 179.97438 * 17 16 14 32 32 H 1.08998 * 113.61605 * 334.56444 * 18 11 10 33 33 H 1.09004 * 113.61788 * 105.38225 * 18 11 10 34 34 H 1.08005 * 125.19581 * 179.75726 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2303 5 6 1.7535 -2.0052 1.4972 6 6 2.3065 -2.4362 2.6907 7 16 2.1904 -4.1061 3.2408 8 8 2.3437 -4.0749 4.6532 9 8 1.0542 -4.6632 2.5945 10 7 3.5090 -4.9113 2.6450 11 6 4.8549 -4.5456 3.0934 12 1 4.8849 -3.5802 3.5986 13 6 5.5736 -5.6663 3.8629 14 6 6.8515 -5.2542 3.1097 15 1 7.4283 -4.4832 3.6205 16 6 7.7099 -6.4379 2.6594 17 8 8.6093 -6.8008 3.7090 18 6 5.9311 -4.7058 2.0066 19 6 2.9291 -1.4902 3.3956 20 16 2.8427 0.0407 2.5338 21 1 -0.3933 0.4416 0.7651 22 1 1.7924 -0.5138 -0.8901 23 1 1.5613 2.4680 -1.2084 24 1 1.5879 2.4585 1.2244 25 1 1.2181 -2.6671 0.8326 26 1 3.3903 -5.6251 1.9990 27 1 5.6247 -5.4944 4.9381 28 1 5.2205 -6.6658 3.6095 29 1 7.0658 -7.2851 2.4238 30 1 8.2796 -6.1574 1.7735 31 1 9.1857 -7.5465 3.4928 32 1 5.6760 -5.4423 1.2447 33 1 6.2694 -3.7596 1.5842 34 1 3.4138 -1.6416 4.3488 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_12366700_15065232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:05 Heat of formation + Delta-G solvation = -90.999523 kcal Electronic energy + Delta-G solvation = -21058.352193 eV Core-core repulsion = 17598.691455 eV Total energy + Delta-G solvation = -3459.660738 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.047 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.59354 -39.56259 -38.20994 -37.70335 -37.40989 -36.84582 -34.24565 -31.91511 -28.64959 -27.27788 -26.81278 -24.96696 -23.45148 -21.58903 -20.98806 -20.11233 -19.22778 -18.54154 -18.27740 -17.99197 -17.68721 -17.38882 -16.56641 -16.46237 -15.92420 -15.65557 -15.51837 -15.02555 -14.67890 -14.31589 -14.26951 -13.90802 -13.86583 -13.59661 -13.50224 -13.16380 -13.04672 -12.91592 -12.88459 -12.51210 -12.36213 -11.99196 -11.94265 -11.62758 -11.54481 -10.90735 -10.88077 -10.55269 -10.29654 -9.91142 -5.21291 -0.77057 -0.53530 0.26216 0.52221 0.93053 1.10236 1.41127 1.77734 2.00022 2.70616 3.06179 3.13073 3.28644 3.33528 3.47888 3.58153 3.65103 3.74320 3.77840 4.00196 4.17079 4.28452 4.34215 4.41566 4.49282 4.57799 4.61700 4.64128 4.81141 4.84668 4.94817 5.00888 5.01510 5.37213 5.81867 6.19787 6.62593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.521 6.521 2 C -0.034 4.034 3 Si 0.651 3.349 4 C -0.227 4.227 5 C -0.041 4.041 6 C -0.685 4.685 7 S 2.706 3.294 8 O -0.950 6.950 9 O -0.952 6.952 10 N -1.101 6.101 11 C 0.128 3.872 12 H 0.112 0.888 13 C -0.142 4.142 14 C -0.111 4.111 15 H 0.103 0.897 16 C 0.086 3.914 17 O -0.573 6.573 18 C -0.136 4.136 19 C -0.089 4.089 20 S 0.160 5.840 21 H 0.379 0.621 22 H 0.130 0.870 23 H -0.233 1.233 24 H -0.239 1.239 25 H 0.157 0.843 26 H 0.421 0.579 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.381 0.619 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.177 1.090 -2.778 6.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.328 6.328 2 C -0.146 4.146 3 Si 0.549 3.451 4 C -0.345 4.345 5 C -0.070 4.070 6 C -0.785 4.785 7 S 2.792 3.208 8 O -0.940 6.940 9 O -0.942 6.942 10 N -0.860 5.860 11 C 0.020 3.980 12 H 0.130 0.870 13 C -0.182 4.182 14 C -0.131 4.131 15 H 0.121 0.879 16 C 0.008 3.992 17 O -0.379 6.379 18 C -0.176 4.176 19 C -0.228 4.228 20 S 0.424 5.576 21 H 0.227 0.773 22 H 0.147 0.853 23 H -0.156 1.156 24 H -0.163 1.163 25 H 0.175 0.825 26 H 0.257 0.743 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.228 0.772 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 5.600 3.446 -2.125 6.911 hybrid contribution -0.986 -1.728 -0.667 2.099 sum 4.614 1.718 -2.793 5.661 Atomic orbital electron populations 1.86650 1.16989 1.79889 1.49251 1.24417 0.84017 1.10150 0.96032 0.95317 0.91654 0.74914 0.83206 1.25019 1.08831 0.98282 1.02342 1.19613 0.97541 0.95179 0.94655 1.30073 1.15388 1.26051 1.06954 1.01737 0.72438 0.72811 0.73806 1.93623 1.85809 1.86481 1.28097 1.93617 1.47300 1.76671 1.76639 1.55543 1.20065 1.49688 1.60701 1.22283 0.79929 0.99094 0.96684 0.86990 1.23567 0.94508 0.99267 1.00843 1.22417 0.94603 0.98123 0.97914 0.87902 1.22145 0.91416 0.96107 0.89503 1.86492 1.53849 1.55406 1.42157 1.23385 0.94998 1.02385 0.96811 1.25943 0.98629 0.95892 1.02357 1.84443 1.50266 1.10689 1.12204 0.77328 0.85271 1.15563 1.16326 0.82547 0.74333 0.90100 0.89131 0.93420 0.93405 0.77189 0.88935 0.90092 0.79718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.39 12.88 -35.23 -0.45 -0.85 16 2 C -0.03 0.03 2.96 36.00 0.11 0.14 16 3 Si 0.65 -1.08 30.98 -169.99 -5.27 -6.35 16 4 C -0.23 0.11 5.70 -36.00 -0.21 -0.10 16 5 C -0.04 -0.02 9.59 -41.21 -0.40 -0.41 16 6 C -0.69 -0.06 5.86 -41.21 -0.24 -0.30 16 7 S 2.71 2.87 5.74 -107.50 -0.62 2.25 16 8 O -0.95 -3.63 17.39 -57.17 -0.99 -4.62 16 9 O -0.95 -4.10 17.63 -57.17 -1.01 -5.11 16 10 N -1.10 2.18 5.79 -4.20 -0.02 2.16 16 11 C 0.13 -0.32 4.34 -67.12 -0.29 -0.61 16 12 H 0.11 -0.40 7.92 -51.93 -0.41 -0.81 16 13 C -0.14 0.21 7.45 -25.83 -0.19 0.02 16 14 C -0.11 0.24 4.01 -89.72 -0.36 -0.12 16 15 H 0.10 -0.17 8.14 -51.93 -0.42 -0.60 16 16 C 0.09 -0.17 6.89 37.16 0.26 0.09 16 17 O -0.57 0.10 13.66 -35.23 -0.48 -0.39 16 18 C -0.14 0.49 7.42 -25.92 -0.19 0.30 16 19 C -0.09 0.10 10.56 29.04 0.31 0.41 16 20 S 0.16 -0.24 20.60 -107.50 -2.21 -2.46 16 21 H 0.38 -0.75 8.70 45.56 0.40 -0.36 16 22 H 0.13 -0.28 7.96 -51.93 -0.41 -0.69 16 23 H -0.23 -0.27 7.11 56.52 0.40 0.14 16 24 H -0.24 -0.02 7.11 56.52 0.40 0.38 16 25 H 0.16 0.06 7.96 -52.49 -0.42 -0.36 16 26 H 0.42 -1.55 8.93 -34.47 -0.31 -1.86 16 27 H 0.08 -0.04 8.14 -51.93 -0.42 -0.47 16 28 H 0.09 -0.15 7.91 -51.93 -0.41 -0.56 16 29 H 0.05 -0.13 7.86 -51.93 -0.41 -0.54 16 30 H 0.05 -0.14 8.14 -51.93 -0.42 -0.56 16 31 H 0.38 -1.59 9.12 45.56 0.42 -1.17 16 32 H 0.09 -0.40 8.10 -51.93 -0.42 -0.82 16 33 H 0.08 -0.34 8.14 -51.93 -0.42 -0.77 16 34 H 0.19 -0.58 8.00 -52.48 -0.42 -1.00 16 LS Contribution 318.71 15.07 4.80 4.80 Total: 0.00 -10.45 318.71 -10.75 -21.20 By element: Atomic # 1 Polarization: -6.76 SS G_CDS: -3.29 Total: -10.04 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.21 Total: -0.59 kcal Atomic # 7 Polarization: 2.18 SS G_CDS: -0.02 Total: 2.16 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -2.94 Total: -10.97 kcal Atomic # 14 Polarization: -1.08 SS G_CDS: -5.27 Total: -6.35 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.83 Total: -0.21 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -10.45 -10.75 -21.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_12366700_15065232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.802 kcal (2) G-P(sol) polarization free energy of solvation -10.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds