Wall clock time and date at job start Tue Mar 9 2021 12:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86301 * 109.46963 * 2 1 4 4 C 1.50695 * 109.47650 * 120.00290 * 2 1 3 5 5 C 1.33393 * 125.19954 * 64.99736 * 4 2 1 6 6 C 1.38427 * 114.92011 * 179.97438 * 5 4 2 7 7 S 1.76199 * 122.54029 * 179.97438 * 6 5 4 8 8 O 1.42100 * 106.40198 * 203.54343 * 7 6 5 9 9 O 1.42096 * 106.39959 * 336.46408 * 7 6 5 10 10 N 1.65599 * 107.21658 * 90.00399 * 7 6 5 11 11 C 1.46501 * 120.00418 * 65.00023 * 10 7 6 12 12 H 1.09003 * 112.84245 * 344.66299 * 11 10 7 13 13 C 1.53778 * 113.61717 * 115.86208 * 11 10 7 14 14 C 1.53953 * 87.01984 * 139.95306 * 13 11 10 15 15 H 1.08994 * 113.53537 * 89.18972 * 14 13 11 16 16 C 1.53000 * 113.74272 * 220.05676 * 14 13 11 17 17 O 1.42906 * 109.47066 * 272.59877 * 16 14 13 18 18 C 1.53777 * 113.61556 * 213.47130 * 11 10 7 19 19 C 1.33392 * 114.91626 * 0.25028 * 6 5 4 20 20 S 1.75884 * 109.59877 * 359.63459 * 19 6 5 21 21 H 0.96700 * 113.99761 * 299.99154 * 1 2 3 22 22 H 1.09005 * 109.47157 * 240.00483 * 2 1 3 23 23 H 1.48496 * 110.00203 * 300.00551 * 3 2 1 24 24 H 1.48506 * 109.99818 * 61.32648 * 3 2 1 25 25 H 1.07993 * 122.54323 * 359.94958 * 5 4 2 26 26 H 0.97001 * 119.99869 * 244.99817 * 10 7 6 27 27 H 1.08997 * 113.61492 * 254.53467 * 13 11 10 28 28 H 1.08997 * 113.61289 * 25.43405 * 13 11 10 29 29 H 1.09001 * 109.47290 * 32.59526 * 16 14 13 30 30 H 1.08994 * 109.47314 * 152.59599 * 16 14 13 31 31 H 0.96699 * 113.99978 * 179.97438 * 17 16 14 32 32 H 1.08998 * 113.61605 * 334.56444 * 18 11 10 33 33 H 1.09004 * 113.61788 * 105.38225 * 18 11 10 34 34 H 1.08005 * 125.19581 * 179.75726 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2303 5 6 1.7535 -2.0052 1.4972 6 6 2.3065 -2.4362 2.6907 7 16 2.1904 -4.1061 3.2408 8 8 2.3437 -4.0749 4.6532 9 8 1.0542 -4.6632 2.5945 10 7 3.5090 -4.9113 2.6450 11 6 4.8549 -4.5456 3.0934 12 1 4.8849 -3.5802 3.5986 13 6 5.5736 -5.6663 3.8629 14 6 6.8515 -5.2542 3.1097 15 1 7.4283 -4.4832 3.6205 16 6 7.7099 -6.4379 2.6594 17 8 8.6093 -6.8008 3.7090 18 6 5.9311 -4.7058 2.0066 19 6 2.9291 -1.4902 3.3956 20 16 2.8427 0.0407 2.5338 21 1 -0.3933 0.4416 0.7651 22 1 1.7924 -0.5138 -0.8901 23 1 1.5613 2.4680 -1.2084 24 1 1.5879 2.4585 1.2244 25 1 1.2181 -2.6671 0.8326 26 1 3.3903 -5.6251 1.9990 27 1 5.6247 -5.4944 4.9381 28 1 5.2205 -6.6658 3.6095 29 1 7.0658 -7.2851 2.4238 30 1 8.2796 -6.1574 1.7735 31 1 9.1857 -7.5465 3.4928 32 1 5.6760 -5.4423 1.2447 33 1 6.2694 -3.7596 1.5842 34 1 3.4138 -1.6416 4.3488 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_12366700_15065232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:04 Heat of formation + Delta-G solvation = -98.094401 kcal Electronic energy + Delta-G solvation = -21058.659850 eV Core-core repulsion = 17598.691455 eV Total energy + Delta-G solvation = -3459.968395 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.047 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.40772 -39.51978 -38.39941 -37.68355 -37.29070 -37.04707 -34.13799 -31.86681 -28.48637 -27.21672 -26.59827 -24.93527 -23.28955 -21.55780 -20.83674 -20.08596 -19.16996 -18.57684 -18.16141 -17.96187 -17.69123 -17.29477 -16.43891 -16.37445 -15.98084 -15.61254 -15.37781 -14.98355 -14.54847 -14.27045 -14.21605 -13.86737 -13.80637 -13.55928 -13.36477 -13.34189 -13.25323 -12.95145 -12.72395 -12.53184 -12.34596 -11.84671 -11.76849 -11.56596 -11.38335 -10.82864 -10.73748 -10.41827 -10.23128 -9.82803 -5.10132 -0.79935 -0.49217 0.34259 0.58754 0.95280 1.18534 1.49482 1.85193 2.02791 2.65738 3.19201 3.29234 3.31944 3.53878 3.60702 3.71590 3.83978 3.89177 3.99258 4.15870 4.24360 4.46405 4.48991 4.60148 4.64908 4.71252 4.84401 4.89809 4.91546 4.98280 5.03718 5.14114 5.17144 5.57045 6.02638 6.33984 6.92842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.043 4.043 3 Si 0.726 3.274 4 C -0.231 4.231 5 C -0.055 4.055 6 C -0.691 4.691 7 S 2.721 3.279 8 O -0.982 6.982 9 O -0.990 6.990 10 N -1.090 6.090 11 C 0.122 3.878 12 H 0.123 0.877 13 C -0.151 4.151 14 C -0.113 4.113 15 H 0.097 0.903 16 C 0.082 3.918 17 O -0.599 6.599 18 C -0.124 4.124 19 C -0.090 4.090 20 S 0.192 5.808 21 H 0.388 0.612 22 H 0.140 0.860 23 H -0.273 1.273 24 H -0.260 1.260 25 H 0.151 0.849 26 H 0.430 0.570 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.395 0.605 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.198 1.667 -3.208 8.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.155 4.155 3 Si 0.627 3.373 4 C -0.349 4.349 5 C -0.084 4.084 6 C -0.792 4.792 7 S 2.810 3.190 8 O -0.972 6.972 9 O -0.980 6.980 10 N -0.851 5.851 11 C 0.015 3.985 12 H 0.141 0.859 13 C -0.191 4.191 14 C -0.133 4.133 15 H 0.115 0.885 16 C 0.004 3.996 17 O -0.407 6.407 18 C -0.163 4.163 19 C -0.229 4.229 20 S 0.456 5.544 21 H 0.237 0.763 22 H 0.158 0.842 23 H -0.199 1.199 24 H -0.185 1.185 25 H 0.169 0.831 26 H 0.267 0.733 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.245 0.755 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 6.628 3.973 -2.547 8.136 hybrid contribution -1.277 -1.871 -0.537 2.328 sum 5.351 2.102 -3.084 6.524 Atomic orbital electron populations 1.86620 1.18044 1.80315 1.50070 1.24678 0.83325 1.11021 0.96441 0.94481 0.90402 0.72653 0.79743 1.25107 1.08855 0.98140 1.02806 1.19652 0.98142 0.95650 0.94950 1.29790 1.16650 1.25403 1.07334 1.00907 0.72172 0.72983 0.72905 1.93579 1.86319 1.87117 1.30181 1.93561 1.49594 1.77786 1.77104 1.55266 1.19514 1.49630 1.60709 1.22488 0.79480 0.99235 0.97315 0.85897 1.23633 0.95535 0.99735 1.00211 1.22421 0.94333 0.98080 0.98427 0.88467 1.22268 0.91485 0.96391 0.89451 1.86448 1.54550 1.56386 1.43340 1.23347 0.93445 1.03215 0.96282 1.26261 0.97894 0.95900 1.02858 1.84347 1.49220 1.09727 1.11105 0.76263 0.84221 1.19899 1.18549 0.83144 0.73286 0.91539 0.89140 0.92773 0.92305 0.75547 0.87894 0.88773 0.77893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.94 12.88 -148.98 -1.92 -2.86 16 2 C -0.04 0.10 2.96 71.23 0.21 0.31 16 3 Si 0.73 -2.70 30.98 68.60 2.13 -0.58 16 4 C -0.23 0.32 5.70 24.59 0.14 0.46 16 5 C -0.06 -0.06 9.59 21.22 0.20 0.15 16 6 C -0.69 -0.14 5.86 21.22 0.12 -0.01 16 7 S 2.72 7.97 5.74 -56.49 -0.32 7.64 16 8 O -0.98 -8.41 17.39 -128.00 -2.23 -10.64 16 9 O -0.99 -9.95 17.63 -128.00 -2.26 -12.21 16 10 N -1.09 4.17 5.79 -167.20 -0.97 3.20 16 11 C 0.12 -0.65 4.34 45.51 0.20 -0.45 16 12 H 0.12 -0.95 7.92 -2.39 -0.02 -0.97 16 13 C -0.15 0.39 7.45 31.18 0.23 0.63 16 14 C -0.11 0.52 4.01 -10.21 -0.04 0.48 16 15 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 16 C 0.08 -0.35 6.89 71.98 0.50 0.14 16 17 O -0.60 0.14 13.66 -148.98 -2.04 -1.89 16 18 C -0.12 1.04 7.42 31.12 0.23 1.27 16 19 C -0.09 0.27 10.56 66.72 0.70 0.98 16 20 S 0.19 -0.80 20.60 -56.49 -1.16 -1.97 16 21 H 0.39 -1.43 8.70 -74.06 -0.64 -2.07 16 22 H 0.14 -0.66 7.96 -2.38 -0.02 -0.68 16 23 H -0.27 -0.82 7.11 99.48 0.71 -0.11 16 24 H -0.26 0.10 7.11 99.48 0.71 0.81 16 25 H 0.15 0.26 7.96 -2.91 -0.02 0.23 16 26 H 0.43 -3.12 8.93 -96.74 -0.86 -3.98 16 27 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.09 -0.26 7.91 -2.39 -0.02 -0.28 16 29 H 0.05 -0.32 7.86 -2.39 -0.02 -0.34 16 30 H 0.06 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H 0.39 -3.26 9.12 -74.06 -0.68 -3.93 16 32 H 0.10 -1.06 8.10 -2.39 -0.02 -1.08 16 33 H 0.09 -0.99 8.14 -2.38 -0.02 -1.01 16 34 H 0.20 -1.49 8.00 -2.91 -0.02 -1.51 16 Total: 0.00 -23.80 318.71 -7.26 -31.06 By element: Atomic # 1 Polarization: -14.71 SS G_CDS: -0.99 Total: -15.70 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 2.50 Total: 3.95 kcal Atomic # 7 Polarization: 4.17 SS G_CDS: -0.97 Total: 3.20 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -8.44 Total: -27.60 kcal Atomic # 14 Polarization: -2.70 SS G_CDS: 2.13 Total: -0.58 kcal Atomic # 16 Polarization: 7.17 SS G_CDS: -1.49 Total: 5.68 kcal Total: -23.80 -7.26 -31.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_12366700_15065232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.039 kcal (2) G-P(sol) polarization free energy of solvation -23.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds