Wall clock time and date at job start Tue Mar 9 2021 12:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86306 * 109.47086 * 2 1 4 4 C 1.50692 * 109.47384 * 120.00079 * 2 1 3 5 5 C 1.33393 * 125.20208 * 65.29001 * 4 2 1 6 6 C 1.38423 * 114.91945 * 180.20858 * 5 4 2 7 7 S 1.76205 * 122.53879 * 179.76081 * 6 5 4 8 8 O 1.42094 * 106.40048 * 156.19493 * 7 6 5 9 9 O 1.42098 * 106.40429 * 23.27026 * 7 6 5 10 10 N 1.65604 * 107.21449 * 269.73095 * 7 6 5 11 11 C 1.46500 * 119.99632 * 65.00196 * 10 7 6 12 12 H 1.08996 * 109.47738 * 24.99945 * 11 10 7 13 13 C 1.53002 * 109.47089 * 144.99602 * 11 10 7 14 14 C 1.52997 * 109.47415 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47164 * 300.00027 * 14 13 11 16 16 H 1.09000 * 109.47050 * 300.00004 * 15 14 13 17 17 O 1.42895 * 109.47000 * 179.97438 * 15 14 13 18 18 C 1.35702 * 116.99512 * 149.99992 * 17 15 14 19 19 N 1.32225 * 119.69378 * 359.73167 * 18 17 15 20 20 C 1.31981 * 121.65834 * 179.70955 * 19 18 17 21 21 C 1.38033 * 120.86013 * 0.56272 * 20 19 18 22 22 C 1.38835 * 119.29922 * 359.72616 * 21 20 19 23 23 C 1.38459 * 118.47298 * 359.97438 * 22 21 20 24 24 Cl 1.73605 * 120.45429 * 180.02562 * 23 22 21 25 25 C 1.52999 * 109.46626 * 59.99702 * 15 14 13 26 26 C 1.52996 * 109.47249 * 264.99476 * 11 10 7 27 27 C 1.33390 * 114.92341 * 359.48880 * 6 5 4 28 28 S 1.75883 * 125.20409 * 244.97520 * 4 2 1 29 29 H 0.96702 * 113.99653 * 299.99439 * 1 2 3 30 30 H 1.09000 * 109.46798 * 240.00746 * 2 1 3 31 31 H 1.48493 * 110.00091 * 178.68370 * 3 2 1 32 32 H 1.48498 * 109.99952 * 300.00414 * 3 2 1 33 33 H 1.07998 * 122.54038 * 359.96119 * 5 4 2 34 34 H 0.96993 * 120.00354 * 244.99790 * 10 7 6 35 35 H 1.09000 * 109.46986 * 59.99786 * 13 11 10 36 36 H 1.09001 * 109.47601 * 300.00509 * 13 11 10 37 37 H 1.09001 * 109.46922 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.47140 * 59.99976 * 14 13 11 39 39 H 1.07998 * 119.57210 * 180.28768 * 20 19 18 40 40 H 1.08004 * 120.35083 * 179.74847 * 21 20 19 41 41 H 1.07994 * 120.76113 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.47160 * 60.00369 * 25 15 14 43 43 H 1.09002 * 109.46719 * 180.02562 * 25 15 14 44 44 H 1.09000 * 109.47054 * 300.00354 * 26 11 10 45 45 H 1.09001 * 109.46997 * 60.00087 * 26 11 10 46 46 H 1.07997 * 125.20363 * 180.25084 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7582 -2.0063 1.4946 6 6 2.3057 -2.4358 2.6913 7 16 2.1896 -4.1058 3.2414 8 8 3.2722 -4.3087 4.1391 9 8 1.9844 -4.8977 2.0795 10 7 0.8056 -4.2299 4.1423 11 6 -0.5008 -4.0362 3.5083 12 1 -0.4255 -4.2611 2.4445 13 6 -1.5253 -4.9703 4.1556 14 6 -2.8898 -4.7676 3.4940 15 6 -3.3355 -3.3156 3.6785 16 1 -3.4107 -3.0910 4.7425 17 8 -4.6097 -3.1262 3.0601 18 6 -5.4260 -2.1894 3.6055 19 7 -5.0247 -1.5078 4.6652 20 6 -5.7845 -0.5843 5.2233 21 6 -7.0399 -0.3031 4.7232 22 6 -7.5016 -1.0003 3.6149 23 6 -6.6786 -1.9587 3.0481 24 17 -7.2039 -2.8604 1.6607 25 6 -2.3110 -2.3816 3.0312 26 6 -0.9468 -2.5843 3.6923 27 6 2.9328 -1.4910 3.3937 28 16 2.8426 0.0407 2.5339 29 1 -0.3933 0.4416 0.7651 30 1 1.7923 -0.5137 -0.8901 31 1 3.5346 1.7704 0.0321 32 1 1.5615 2.4679 -1.2084 33 1 1.2274 -2.6694 0.8276 34 1 0.8599 -4.4309 5.0896 35 1 -1.6007 -4.7454 5.2195 36 1 -1.2076 -6.0047 4.0246 37 1 -3.6197 -5.4328 3.9554 38 1 -2.8147 -4.9922 2.4300 39 1 -5.4211 -0.0446 6.0853 40 1 -7.6565 0.4516 5.1889 41 1 -8.4798 -0.7991 3.2039 42 1 -2.2359 -2.6061 1.9673 43 1 -2.6283 -1.3471 3.1631 44 1 -1.0222 -2.3594 4.7562 45 1 -0.2169 -1.9188 3.2312 46 1 3.4209 -1.6432 4.3449 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_12496454_15065232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:29 Heat of formation + Delta-G solvation = -75.302310 kcal Electronic energy + Delta-G solvation = -35834.104888 eV Core-core repulsion = 30970.381709 eV Total energy + Delta-G solvation = -4863.723178 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 431.051 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.80218 -40.18864 -39.48462 -38.54442 -38.23329 -37.56631 -37.52764 -37.04861 -34.76902 -33.36220 -31.89737 -31.78436 -31.37366 -29.13275 -27.19849 -25.04848 -24.96248 -24.40808 -23.67821 -22.91027 -21.42740 -21.19629 -20.13557 -19.54963 -19.18751 -18.60075 -18.14321 -17.91839 -17.71695 -17.33123 -17.25251 -16.73883 -16.35775 -16.17617 -15.88905 -15.71405 -15.40290 -15.16157 -14.96901 -14.83457 -14.45186 -14.38615 -14.32090 -14.17759 -13.97705 -13.95044 -13.54557 -13.38116 -13.33784 -13.25693 -13.22188 -13.09176 -12.98098 -12.92171 -12.55107 -12.41276 -12.23923 -12.19223 -12.12962 -11.98978 -11.69159 -11.49890 -11.26144 -10.74858 -10.67740 -10.65651 -10.46848 -10.17063 -9.80488 -9.41916 -5.21996 -0.79337 -0.45773 -0.06079 0.17080 0.34748 0.59278 0.98669 1.08966 1.15919 1.52363 1.83485 1.86510 2.06134 2.64135 2.67214 3.19253 3.27455 3.41724 3.59032 3.63127 3.64946 3.75416 3.91443 3.93706 3.97668 4.00058 4.09317 4.17052 4.21940 4.27284 4.33891 4.37485 4.39809 4.47861 4.49492 4.65064 4.77850 4.84659 4.87438 4.91367 5.00752 5.04296 5.07082 5.08481 5.13177 5.15666 5.29525 5.36523 5.46445 6.06571 6.19314 6.63118 6.71489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.032 4.032 3 Si 0.732 3.268 4 C -0.234 4.234 5 C -0.054 4.054 6 C -0.693 4.693 7 S 2.724 3.276 8 O -0.984 6.984 9 O -0.987 6.987 10 N -1.096 6.096 11 C 0.144 3.856 12 H 0.087 0.913 13 C -0.113 4.113 14 C -0.115 4.115 15 C 0.088 3.912 16 H 0.093 0.907 17 O -0.305 6.305 18 C 0.319 3.681 19 N -0.537 5.537 20 C 0.139 3.861 21 C -0.192 4.192 22 C -0.036 4.036 23 C -0.135 4.135 24 Cl -0.058 7.058 25 C -0.124 4.124 26 C -0.127 4.127 27 C -0.081 4.081 28 S 0.191 5.809 29 H 0.395 0.605 30 H 0.119 0.881 31 H -0.265 1.265 32 H -0.271 1.271 33 H 0.148 0.852 34 H 0.431 0.569 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.196 0.804 40 H 0.178 0.822 41 H 0.168 0.832 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.029 7.415 7.141 11.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.144 4.144 3 Si 0.635 3.365 4 C -0.352 4.352 5 C -0.083 4.083 6 C -0.794 4.794 7 S 2.813 3.187 8 O -0.974 6.974 9 O -0.977 6.977 10 N -0.858 5.858 11 C 0.037 3.963 12 H 0.105 0.895 13 C -0.152 4.152 14 C -0.153 4.153 15 C 0.032 3.968 16 H 0.111 0.889 17 O -0.212 6.212 18 C 0.140 3.860 19 N -0.262 5.262 20 C -0.016 4.016 21 C -0.212 4.212 22 C -0.062 4.062 23 C -0.164 4.164 24 Cl -0.030 7.030 25 C -0.162 4.162 26 C -0.166 4.166 27 C -0.220 4.220 28 S 0.455 5.545 29 H 0.245 0.755 30 H 0.136 0.864 31 H -0.191 1.191 32 H -0.196 1.196 33 H 0.166 0.834 34 H 0.269 0.731 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.213 0.787 40 H 0.195 0.805 41 H 0.185 0.815 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.097 0.903 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -1.577 8.092 6.052 10.227 hybrid contribution -1.298 -1.429 -0.879 2.121 sum -2.875 6.663 5.173 8.912 Atomic orbital electron populations 1.86532 1.16407 1.82032 1.50223 1.24544 0.85481 1.09559 0.94838 0.94323 0.79293 0.75052 0.87851 1.25128 1.08829 0.98281 1.02950 1.19606 0.98595 0.95236 0.94857 1.29768 1.16928 1.25832 1.06916 1.00807 0.72161 0.73231 0.72543 1.93571 1.52833 1.85726 1.65282 1.93565 1.85860 1.67052 1.51208 1.55257 1.19396 1.87477 1.23653 1.21011 0.81766 0.95841 0.97672 0.89470 1.21718 0.91967 1.00289 1.01188 1.21588 0.97150 0.93960 1.02606 1.22588 0.79238 0.96302 0.98646 0.88926 1.86360 1.28687 1.51945 1.54242 1.19673 0.87904 0.89028 0.89430 1.67503 1.37525 1.10945 1.10202 1.23197 0.90184 0.90625 0.97630 1.22409 0.98209 1.03114 0.97457 1.21793 0.99686 0.90662 0.94033 1.21179 0.95351 1.03133 0.96781 1.98386 1.89951 1.74040 1.40587 1.21802 0.94280 0.99706 1.00447 1.21984 0.95930 0.95780 1.02936 1.26205 0.97012 0.95577 1.03222 1.84246 1.49400 1.09595 1.11224 0.75494 0.86378 1.19067 1.19621 0.83433 0.73088 0.89076 0.89643 0.90388 0.90983 0.78691 0.80485 0.81482 0.91573 0.91201 0.89422 0.90282 0.77886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.79 12.88 -148.98 -1.92 -1.13 16 2 C -0.03 0.05 2.96 71.23 0.21 0.26 16 3 Si 0.73 -2.27 30.98 68.60 2.13 -0.14 16 4 C -0.23 0.32 5.70 24.59 0.14 0.46 16 5 C -0.05 -0.05 8.69 21.22 0.18 0.14 16 6 C -0.69 0.01 4.96 21.22 0.11 0.11 16 7 S 2.72 7.12 5.78 -56.49 -0.33 6.79 16 8 O -0.98 -7.51 17.64 -128.00 -2.26 -9.76 16 9 O -0.99 -9.90 16.97 -128.00 -2.17 -12.07 16 10 N -1.10 4.64 5.47 -169.39 -0.93 3.72 16 11 C 0.14 -0.57 2.79 44.99 0.13 -0.45 16 12 H 0.09 -0.14 7.50 -2.39 -0.02 -0.15 16 13 C -0.11 0.59 5.45 30.59 0.17 0.75 16 14 C -0.11 0.25 5.57 30.60 0.17 0.42 16 15 C 0.09 -0.03 2.38 30.60 0.07 0.04 16 16 H 0.09 -0.04 6.98 -2.39 -0.02 -0.06 16 17 O -0.31 -1.45 9.24 -90.22 -0.83 -2.28 16 18 C 0.32 1.27 7.45 84.82 0.63 1.90 16 19 N -0.54 -0.48 8.64 -308.86 -2.67 -3.15 16 20 C 0.14 -0.66 11.17 84.62 0.95 0.29 16 21 C -0.19 1.22 10.10 22.36 0.23 1.45 16 22 C -0.04 0.09 9.97 22.47 0.22 0.32 16 23 C -0.13 -0.41 6.36 22.51 0.14 -0.26 16 24 Cl -0.06 -0.29 28.54 -2.72 -0.08 -0.37 16 25 C -0.12 0.28 5.54 30.58 0.17 0.45 16 26 C -0.13 0.70 5.52 30.58 0.17 0.87 16 27 C -0.08 0.26 10.70 66.72 0.71 0.97 16 28 S 0.19 -0.85 20.60 -56.49 -1.16 -2.01 16 29 H 0.40 -3.71 8.70 -74.06 -0.64 -4.35 16 30 H 0.12 -0.04 7.96 -2.39 -0.02 -0.06 16 31 H -0.26 -0.35 7.11 99.48 0.71 0.36 16 32 H -0.27 -0.92 7.11 99.48 0.71 -0.21 16 33 H 0.15 0.30 7.96 -2.91 -0.02 0.28 16 34 H 0.43 -3.74 8.84 -96.75 -0.85 -4.60 16 35 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 36 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.20 -2.23 8.06 -2.91 -0.02 -2.26 16 40 H 0.18 -2.25 8.06 -2.91 -0.02 -2.28 16 41 H 0.17 -1.12 8.06 -2.91 -0.02 -1.15 16 42 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 43 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 45 H 0.08 -0.46 6.20 -2.39 -0.01 -0.48 16 46 H 0.20 -1.51 8.00 -2.91 -0.02 -1.53 16 Total: 0.00 -25.19 419.60 -6.23 -31.41 By element: Atomic # 1 Polarization: -18.32 SS G_CDS: -0.41 Total: -18.73 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 4.40 Total: 7.72 kcal Atomic # 7 Polarization: 4.16 SS G_CDS: -3.60 Total: 0.56 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -7.18 Total: -25.25 kcal Atomic # 14 Polarization: -2.27 SS G_CDS: 2.13 Total: -0.14 kcal Atomic # 16 Polarization: 6.27 SS G_CDS: -1.49 Total: 4.78 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.37 kcal Total: -25.19 -6.23 -31.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_12496454_15065232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.888 kcal (2) G-P(sol) polarization free energy of solvation -25.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds