Wall clock time and date at job start Tue Mar 9 2021 12:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47349 * 2 1 4 4 C 1.52994 * 109.47400 * 239.99734 * 2 1 3 5 5 O 1.45202 * 109.46865 * 119.99693 * 2 1 3 6 6 C 1.34638 * 117.00086 * 60.00375 * 5 2 1 7 7 O 1.21511 * 119.99780 * 359.97438 * 6 5 2 8 8 N 1.34769 * 120.00268 * 180.02562 * 6 5 2 9 9 C 1.46494 * 120.00384 * 179.97438 * 8 6 5 10 10 H 1.09000 * 112.84646 * 336.19166 * 9 8 6 11 11 C 1.53782 * 113.61944 * 107.49869 * 9 8 6 12 12 C 1.53778 * 87.08360 * 139.98078 * 11 9 8 13 13 H 1.09007 * 113.68678 * 89.12768 * 12 11 9 14 14 C 1.52998 * 113.61487 * 220.01895 * 12 11 9 15 15 N 1.46503 * 109.47011 * 272.49510 * 14 12 11 16 16 S 1.65605 * 119.99534 * 162.53800 * 15 14 12 17 17 O 1.42100 * 106.40444 * 314.76343 * 16 15 14 18 18 O 1.42100 * 106.39888 * 181.84017 * 16 15 14 19 19 C 1.76200 * 107.21633 * 68.30561 * 16 15 14 20 20 C 1.33390 * 122.53852 * 166.41167 * 19 16 15 21 21 C 1.50699 * 125.20161 * 359.74360 * 20 19 16 22 22 O 1.42903 * 109.47001 * 38.88862 * 21 20 19 23 23 Si 1.86306 * 109.46789 * 158.88371 * 21 20 19 24 24 S 1.75887 * 109.59140 * 179.72923 * 20 19 16 25 25 C 1.75879 * 90.97239 * 359.97438 * 24 20 19 26 26 C 1.33393 * 109.59451 * 359.97438 * 25 24 20 27 27 C 1.53779 * 87.08282 * 334.57070 * 12 11 9 28 28 H 1.09000 * 109.46697 * 300.00772 * 1 2 3 29 29 H 1.09005 * 109.46723 * 59.99947 * 1 2 3 30 30 H 1.08994 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47187 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.46993 * 299.99790 * 3 2 1 33 33 H 1.09005 * 109.47171 * 59.99754 * 3 2 1 34 34 H 1.08999 * 109.47286 * 300.00303 * 4 2 1 35 35 H 1.08996 * 109.47001 * 60.00174 * 4 2 1 36 36 H 1.08998 * 109.47492 * 180.02562 * 4 2 1 37 37 H 0.97003 * 120.00205 * 359.97438 * 8 6 5 38 38 H 1.09007 * 113.61134 * 25.43559 * 11 9 8 39 39 H 1.09002 * 113.61348 * 254.53435 * 11 9 8 40 40 H 1.09001 * 109.46654 * 152.50252 * 14 12 11 41 41 H 1.08994 * 109.46901 * 32.49995 * 14 12 11 42 42 H 0.96996 * 120.00616 * 342.54881 * 15 14 12 43 43 H 1.08990 * 109.47402 * 278.88541 * 21 20 19 44 44 H 0.96695 * 114.00125 * 65.35038 * 22 21 20 45 45 H 1.48503 * 109.99782 * 58.68426 * 23 21 20 46 46 H 1.48499 * 109.99875 * 179.97438 * 23 21 20 47 47 H 1.07995 * 125.20589 * 180.02562 * 25 24 20 48 48 H 1.07998 * 122.53998 * 180.02562 * 26 25 24 49 49 H 1.09000 * 113.61439 * 139.97822 * 27 12 11 50 50 H 1.09000 * 113.61537 * 270.79769 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9509 -2.5094 0.5041 8 7 2.0671 -2.6653 2.4172 9 6 1.6731 -4.0664 2.5838 10 1 0.7587 -4.3158 2.0454 11 6 2.8210 -5.0617 2.3462 12 6 2.2720 -5.8593 3.5409 13 1 1.5220 -6.6006 3.2650 14 6 3.3623 -6.4276 4.4514 15 7 3.7827 -7.7385 3.9504 16 16 5.2167 -8.3963 4.4538 17 8 6.1818 -7.3556 4.3848 18 8 5.3551 -9.6316 3.7652 19 6 5.0366 -8.7956 6.1605 20 6 5.9014 -9.5765 6.8098 21 6 7.1203 -10.2185 6.1988 22 8 7.7322 -9.3057 5.2854 23 14 8.3320 -10.6562 7.5446 24 16 5.4017 -9.7420 8.4880 25 6 4.0057 -8.7102 8.2054 26 6 3.9911 -8.3166 6.9309 27 6 1.6734 -4.5366 4.0480 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6768 -0.2075 -2.1391 36 1 3.1300 -0.7217 -1.2489 37 1 2.6266 -2.2365 3.0835 38 1 3.8098 -4.6378 2.5216 39 1 2.7492 -5.5925 1.3968 40 1 2.9716 -6.5337 5.4635 41 1 4.2168 -5.7510 4.4609 42 1 3.2213 -8.2211 3.3237 43 1 6.8263 -11.1230 5.6664 44 1 8.0927 -8.5123 5.7044 45 1 7.6973 -11.5802 8.5186 46 1 9.5383 -11.2907 6.9552 47 1 3.2729 -8.4365 8.9499 48 1 3.2214 -7.6735 6.5303 49 1 0.6752 -4.6435 4.4725 50 1 2.3479 -3.9698 4.6898 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_12628480_14772022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:20 Heat of formation + Delta-G solvation = -118.060893 kcal Electronic energy + Delta-G solvation = -34495.766944 eV Core-core repulsion = 29744.910398 eV Total energy + Delta-G solvation = -4750.856546 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.120 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -41.78574 -40.54844 -39.69708 -38.09311 -37.88368 -37.71260 -36.58551 -36.10578 -35.13817 -33.85078 -31.86294 -28.49663 -28.29903 -28.25940 -27.59329 -26.87500 -24.78132 -24.41599 -22.51463 -21.72562 -21.44449 -20.78835 -20.00410 -19.36613 -18.99883 -18.42292 -17.98684 -17.70267 -17.28456 -17.19943 -17.01630 -16.58396 -16.48325 -16.27092 -15.72348 -15.59660 -15.48540 -15.34624 -15.16555 -15.05243 -14.41939 -14.34430 -14.13738 -13.99148 -13.69491 -13.63150 -13.41118 -13.40029 -13.19497 -12.99448 -12.90114 -12.81658 -12.79907 -12.79171 -12.75441 -12.59206 -12.38959 -12.33310 -12.13951 -12.12529 -11.74026 -11.72708 -11.52520 -11.26320 -11.05135 -10.92633 -10.60205 -10.20354 -10.11484 -9.84560 -5.25789 -0.61562 -0.53352 0.28468 0.59086 0.97611 1.09062 1.24252 1.41885 1.76929 1.90862 2.03102 2.80833 3.12535 3.14863 3.24757 3.27607 3.28871 3.55442 3.64605 3.76394 3.80735 3.86334 3.87406 3.95665 4.00166 4.01694 4.20052 4.21249 4.32866 4.47568 4.53988 4.57654 4.59080 4.61890 4.65813 4.70827 4.76043 4.80670 4.81037 4.86586 4.90763 4.95146 4.96026 5.03585 5.09867 5.13557 5.36662 5.39419 5.51513 5.63963 5.86467 6.29669 6.45475 7.46364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.650 3.350 7 O -0.567 6.567 8 N -0.702 5.702 9 C 0.140 3.860 10 H 0.121 0.879 11 C -0.151 4.151 12 C -0.115 4.115 13 H 0.106 0.894 14 C 0.122 3.878 15 N -1.120 6.120 16 S 2.722 3.278 17 O -0.944 6.944 18 O -0.947 6.947 19 C -0.663 4.663 20 C -0.099 4.099 21 C -0.071 4.071 22 O -0.531 6.531 23 Si 0.675 3.325 24 S 0.157 5.843 25 C -0.209 4.209 26 C -0.092 4.092 27 C -0.139 4.139 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.407 0.593 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.421 0.579 43 H 0.145 0.855 44 H 0.391 0.609 45 H -0.232 1.232 46 H -0.225 1.225 47 H 0.175 0.825 48 H 0.155 0.845 49 H 0.083 0.917 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.739 3.283 5.924 6.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.404 3.596 7 O -0.456 6.456 8 N -0.360 5.360 9 C 0.036 3.964 10 H 0.139 0.861 11 C -0.190 4.190 12 C -0.136 4.136 13 H 0.124 0.876 14 C -0.004 4.004 15 N -0.882 5.882 16 S 2.807 3.193 17 O -0.934 6.934 18 O -0.937 6.937 19 C -0.760 4.760 20 C -0.220 4.220 21 C -0.183 4.183 22 O -0.338 6.338 23 Si 0.572 3.428 24 S 0.420 5.580 25 C -0.345 4.345 26 C -0.120 4.120 27 C -0.178 4.178 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.242 0.758 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.256 0.744 43 H 0.162 0.838 44 H 0.241 0.759 45 H -0.156 1.156 46 H -0.148 1.148 47 H 0.193 0.807 48 H 0.172 0.828 49 H 0.102 0.898 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.422 1.217 6.385 6.514 hybrid contribution -1.637 0.565 -0.771 1.896 sum -2.059 1.782 5.614 6.239 Atomic orbital electron populations 1.22521 0.93874 1.05019 1.02679 1.22113 0.94412 0.91565 0.81904 1.21878 1.02354 0.92371 1.03303 1.22518 1.01639 1.03444 0.96523 1.86309 1.71495 1.23509 1.46693 1.18180 0.78607 0.80545 0.82295 1.90913 1.41037 1.70533 1.43102 1.44756 1.55345 1.12204 1.23692 1.22544 0.99252 0.77585 0.97056 0.86113 1.23669 0.99332 0.96936 0.99018 1.22571 0.97865 0.96461 0.96686 0.87597 1.21506 0.98521 0.83417 0.96944 1.55643 1.43453 1.29090 1.59966 1.01406 0.71887 0.73463 0.72567 1.93566 1.56600 1.57520 1.85677 1.93593 1.84504 1.44417 1.71190 1.29982 1.04073 1.13547 1.28445 1.25010 0.99886 0.99434 0.97690 1.25101 0.94991 0.96089 1.02107 1.86569 1.76579 1.35351 1.35334 0.94730 0.80976 0.88425 0.78657 1.84524 1.20429 1.46700 1.06328 1.25902 1.03292 1.04436 1.00889 1.19927 0.97869 1.01230 0.92980 1.23425 1.02606 0.95646 0.96079 0.92149 0.90959 0.89442 0.91380 0.89962 0.91410 0.89426 0.90965 0.92099 0.75782 0.88859 0.90286 0.91268 0.89340 0.74442 0.83765 0.75900 1.15604 1.14772 0.80737 0.82753 0.89786 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.24 8.37 37.16 0.31 0.07 16 2 C 0.14 0.19 1.13 -90.62 -0.10 0.09 16 3 C -0.14 0.09 8.85 37.16 0.33 0.42 16 4 C -0.18 -0.28 8.37 37.15 0.31 0.03 16 5 O -0.37 -0.87 9.94 -40.32 -0.40 -1.27 16 6 C 0.65 1.70 8.06 54.05 0.44 2.14 16 7 O -0.57 -2.80 11.48 -19.28 -0.22 -3.02 16 8 N -0.70 0.41 5.36 -57.93 -0.31 0.10 16 9 C 0.14 -0.25 4.24 -67.12 -0.28 -0.53 16 10 H 0.12 -0.05 7.46 -51.93 -0.39 -0.44 16 11 C -0.15 0.31 7.43 -25.92 -0.19 0.12 16 12 C -0.12 0.45 3.80 -89.81 -0.34 0.11 16 13 H 0.11 -0.49 8.12 -51.92 -0.42 -0.92 16 14 C 0.12 -0.41 5.56 -4.04 -0.02 -0.43 16 15 N -1.12 1.88 5.71 -10.61 -0.06 1.82 16 16 S 2.72 5.26 4.22 -107.50 -0.45 4.81 16 17 O -0.94 -3.63 16.05 -65.15 -1.05 -4.67 16 18 O -0.95 -5.17 17.13 -62.07 -1.06 -6.23 16 19 C -0.66 -0.55 5.71 -41.21 -0.24 -0.78 16 20 C -0.10 -0.08 5.77 -36.00 -0.21 -0.29 16 21 C -0.07 -0.06 2.42 36.00 0.09 0.03 16 22 O -0.53 -0.99 9.67 -60.18 -0.58 -1.57 16 23 Si 0.67 -0.85 31.11 -169.99 -5.29 -6.14 16 24 S 0.16 -0.12 20.87 -107.50 -2.24 -2.37 16 25 C -0.21 0.34 11.23 29.04 0.33 0.67 16 26 C -0.09 0.11 9.52 -41.21 -0.39 -0.28 16 27 C -0.14 0.60 7.39 -25.92 -0.19 0.40 16 28 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 29 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.09 0.29 5.88 -51.93 -0.31 -0.01 16 31 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 33 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 34 H 0.09 0.32 5.88 -51.93 -0.31 0.01 16 35 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 36 H 0.06 0.08 8.14 -51.93 -0.42 -0.34 16 37 H 0.41 -1.07 8.84 -40.82 -0.36 -1.43 16 38 H 0.09 -0.16 7.90 -51.93 -0.41 -0.57 16 39 H 0.08 -0.09 8.14 -51.93 -0.42 -0.52 16 40 H 0.07 -0.37 5.39 -51.93 -0.28 -0.65 16 41 H 0.09 -0.25 7.33 -51.93 -0.38 -0.63 16 42 H 0.42 -1.30 8.65 -34.47 -0.30 -1.60 16 43 H 0.15 0.18 7.96 -51.93 -0.41 -0.23 16 44 H 0.39 -0.69 8.43 45.56 0.38 -0.30 16 45 H -0.23 0.01 7.11 56.52 0.40 0.41 16 46 H -0.22 -0.24 7.11 56.52 0.40 0.16 16 47 H 0.18 -0.72 8.06 -52.49 -0.42 -1.14 16 48 H 0.16 -0.59 4.83 -52.49 -0.25 -0.85 16 49 H 0.08 -0.40 8.14 -51.93 -0.42 -0.82 16 50 H 0.09 -0.50 8.08 -51.93 -0.42 -0.92 16 LS Contribution 419.71 15.07 6.33 6.33 Total: 0.00 -11.19 419.71 -12.79 -23.98 By element: Atomic # 1 Polarization: -6.23 SS G_CDS: -7.28 Total: -13.51 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -0.17 Total: 1.75 kcal Atomic # 7 Polarization: 2.29 SS G_CDS: -0.37 Total: 1.92 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -3.31 Total: -16.78 kcal Atomic # 14 Polarization: -0.85 SS G_CDS: -5.29 Total: -6.14 kcal Atomic # 16 Polarization: 5.14 SS G_CDS: -2.70 Total: 2.44 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -11.19 -12.79 -23.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_12628480_14772022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.076 kcal (2) G-P(sol) polarization free energy of solvation -11.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds