Wall clock time and date at job start Tue Mar 9 2021 12:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47349 * 2 1 4 4 C 1.52994 * 109.47400 * 239.99734 * 2 1 3 5 5 O 1.45202 * 109.46865 * 119.99693 * 2 1 3 6 6 C 1.34638 * 117.00086 * 60.00375 * 5 2 1 7 7 O 1.21511 * 119.99780 * 359.97438 * 6 5 2 8 8 N 1.34769 * 120.00268 * 180.02562 * 6 5 2 9 9 C 1.46494 * 120.00384 * 179.97438 * 8 6 5 10 10 H 1.09000 * 112.84646 * 336.19166 * 9 8 6 11 11 C 1.53782 * 113.61944 * 107.49869 * 9 8 6 12 12 C 1.53778 * 87.08360 * 139.98078 * 11 9 8 13 13 H 1.09007 * 113.68678 * 89.12768 * 12 11 9 14 14 C 1.52998 * 113.61487 * 220.01895 * 12 11 9 15 15 N 1.46503 * 109.47011 * 272.49510 * 14 12 11 16 16 S 1.65605 * 119.99534 * 162.53800 * 15 14 12 17 17 O 1.42100 * 106.40444 * 314.76343 * 16 15 14 18 18 O 1.42100 * 106.39888 * 181.84017 * 16 15 14 19 19 C 1.76200 * 107.21633 * 68.30561 * 16 15 14 20 20 C 1.33390 * 122.53852 * 166.41167 * 19 16 15 21 21 C 1.50699 * 125.20161 * 359.74360 * 20 19 16 22 22 O 1.42903 * 109.47001 * 38.88862 * 21 20 19 23 23 Si 1.86306 * 109.46789 * 158.88371 * 21 20 19 24 24 S 1.75887 * 109.59140 * 179.72923 * 20 19 16 25 25 C 1.75879 * 90.97239 * 359.97438 * 24 20 19 26 26 C 1.33393 * 109.59451 * 359.97438 * 25 24 20 27 27 C 1.53779 * 87.08282 * 334.57070 * 12 11 9 28 28 H 1.09000 * 109.46697 * 300.00772 * 1 2 3 29 29 H 1.09005 * 109.46723 * 59.99947 * 1 2 3 30 30 H 1.08994 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47187 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.46993 * 299.99790 * 3 2 1 33 33 H 1.09005 * 109.47171 * 59.99754 * 3 2 1 34 34 H 1.08999 * 109.47286 * 300.00303 * 4 2 1 35 35 H 1.08996 * 109.47001 * 60.00174 * 4 2 1 36 36 H 1.08998 * 109.47492 * 180.02562 * 4 2 1 37 37 H 0.97003 * 120.00205 * 359.97438 * 8 6 5 38 38 H 1.09007 * 113.61134 * 25.43559 * 11 9 8 39 39 H 1.09002 * 113.61348 * 254.53435 * 11 9 8 40 40 H 1.09001 * 109.46654 * 152.50252 * 14 12 11 41 41 H 1.08994 * 109.46901 * 32.49995 * 14 12 11 42 42 H 0.96996 * 120.00616 * 342.54881 * 15 14 12 43 43 H 1.08990 * 109.47402 * 278.88541 * 21 20 19 44 44 H 0.96695 * 114.00125 * 65.35038 * 22 21 20 45 45 H 1.48503 * 109.99782 * 58.68426 * 23 21 20 46 46 H 1.48499 * 109.99875 * 179.97438 * 23 21 20 47 47 H 1.07995 * 125.20589 * 180.02562 * 25 24 20 48 48 H 1.07998 * 122.53998 * 180.02562 * 26 25 24 49 49 H 1.09000 * 113.61439 * 139.97822 * 27 12 11 50 50 H 1.09000 * 113.61537 * 270.79769 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9509 -2.5094 0.5041 8 7 2.0671 -2.6653 2.4172 9 6 1.6731 -4.0664 2.5838 10 1 0.7587 -4.3158 2.0454 11 6 2.8210 -5.0617 2.3462 12 6 2.2720 -5.8593 3.5409 13 1 1.5220 -6.6006 3.2650 14 6 3.3623 -6.4276 4.4514 15 7 3.7827 -7.7385 3.9504 16 16 5.2167 -8.3963 4.4538 17 8 6.1818 -7.3556 4.3848 18 8 5.3551 -9.6316 3.7652 19 6 5.0366 -8.7956 6.1605 20 6 5.9014 -9.5765 6.8098 21 6 7.1203 -10.2185 6.1988 22 8 7.7322 -9.3057 5.2854 23 14 8.3320 -10.6562 7.5446 24 16 5.4017 -9.7420 8.4880 25 6 4.0057 -8.7102 8.2054 26 6 3.9911 -8.3166 6.9309 27 6 1.6734 -4.5366 4.0480 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6768 -0.2075 -2.1391 36 1 3.1300 -0.7217 -1.2489 37 1 2.6266 -2.2365 3.0835 38 1 3.8098 -4.6378 2.5216 39 1 2.7492 -5.5925 1.3968 40 1 2.9716 -6.5337 5.4635 41 1 4.2168 -5.7510 4.4609 42 1 3.2213 -8.2211 3.3237 43 1 6.8263 -11.1230 5.6664 44 1 8.0927 -8.5123 5.7044 45 1 7.6973 -11.5802 8.5186 46 1 9.5383 -11.2907 6.9552 47 1 3.2729 -8.4365 8.9499 48 1 3.2214 -7.6735 6.5303 49 1 0.6752 -4.6435 4.4725 50 1 2.3479 -3.9698 4.6898 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_12628480_14772022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:19 Heat of formation + Delta-G solvation = -122.126480 kcal Electronic energy + Delta-G solvation = -34495.943241 eV Core-core repulsion = 29744.910398 eV Total energy + Delta-G solvation = -4751.032843 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.120 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.87845 -40.42192 -39.66849 -38.25214 -38.03153 -37.74238 -36.80641 -36.08110 -35.22512 -33.85270 -31.81456 -28.37788 -28.36722 -28.29509 -27.56854 -26.64341 -24.72778 -24.40476 -22.47098 -21.68815 -21.41900 -20.77371 -20.02119 -19.35623 -19.06397 -18.47455 -17.97219 -17.72011 -17.31919 -17.19948 -17.14482 -16.61771 -16.43618 -16.17376 -15.77723 -15.59795 -15.50031 -15.40204 -15.12232 -14.95727 -14.48904 -14.34544 -14.11556 -13.91626 -13.62112 -13.45004 -13.37078 -13.33157 -13.17163 -13.13127 -13.04634 -12.99670 -12.90155 -12.86983 -12.74969 -12.63435 -12.47003 -12.36969 -12.15391 -12.03066 -11.63906 -11.55633 -11.42929 -11.39213 -11.09884 -11.05722 -10.44758 -10.15047 -10.09349 -9.75186 -5.18365 -0.69849 -0.50334 0.34918 0.66358 1.03929 1.18004 1.20783 1.47545 1.74906 1.80247 2.03943 2.72831 3.14556 3.17244 3.30468 3.44955 3.50348 3.66708 3.73832 3.78414 3.82235 3.86027 3.93946 4.03747 4.09758 4.19827 4.23894 4.40344 4.47053 4.53494 4.60260 4.65413 4.73635 4.75589 4.80183 4.82190 4.84585 4.86949 4.88901 4.93261 4.95408 5.04007 5.12355 5.14461 5.19718 5.25552 5.26181 5.33883 5.56229 5.62829 6.04081 6.39390 6.43046 7.36095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.641 3.359 7 O -0.596 6.596 8 N -0.689 5.689 9 C 0.130 3.870 10 H 0.104 0.896 11 C -0.157 4.157 12 C -0.104 4.104 13 H 0.117 0.883 14 C 0.114 3.886 15 N -1.111 6.111 16 S 2.731 3.269 17 O -0.971 6.971 18 O -0.992 6.992 19 C -0.668 4.668 20 C -0.121 4.121 21 C -0.091 4.091 22 O -0.552 6.552 23 Si 0.759 3.241 24 S 0.167 5.833 25 C -0.203 4.203 26 C -0.101 4.101 27 C -0.122 4.122 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.418 0.582 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.428 0.572 43 H 0.130 0.870 44 H 0.403 0.597 45 H -0.244 1.244 46 H -0.262 1.262 47 H 0.204 0.796 48 H 0.181 0.819 49 H 0.097 0.903 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.768 4.423 8.043 9.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.395 3.605 7 O -0.488 6.488 8 N -0.349 5.349 9 C 0.026 3.974 10 H 0.122 0.878 11 C -0.196 4.196 12 C -0.125 4.125 13 H 0.135 0.865 14 C -0.011 4.011 15 N -0.875 5.875 16 S 2.818 3.182 17 O -0.960 6.960 18 O -0.982 6.982 19 C -0.769 4.769 20 C -0.242 4.242 21 C -0.201 4.201 22 O -0.362 6.362 23 Si 0.657 3.343 24 S 0.431 5.569 25 C -0.339 4.339 26 C -0.128 4.128 27 C -0.161 4.161 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.255 0.745 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.103 0.897 42 H 0.264 0.736 43 H 0.147 0.853 44 H 0.255 0.745 45 H -0.169 1.169 46 H -0.187 1.187 47 H 0.221 0.779 48 H 0.198 0.802 49 H 0.115 0.885 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.453 2.379 8.496 8.942 hybrid contribution -1.354 0.212 -1.455 1.998 sum -2.807 2.591 7.041 8.011 Atomic orbital electron populations 1.22466 0.93959 1.03688 1.03518 1.22338 0.94513 0.92573 0.81508 1.21889 1.02412 0.90902 1.04263 1.22470 1.01553 1.02243 0.97474 1.86313 1.71568 1.23456 1.47167 1.18482 0.78617 0.80681 0.82745 1.90898 1.42469 1.71066 1.44318 1.44818 1.54726 1.12448 1.22866 1.22666 0.98642 0.76900 0.99189 0.87783 1.23703 0.99172 0.97342 0.99396 1.22532 0.97692 0.96800 0.95452 0.86504 1.21754 0.98633 0.82297 0.98377 1.55366 1.42444 1.29661 1.60062 1.00721 0.72281 0.72365 0.72824 1.93524 1.58277 1.57930 1.86314 1.93532 1.85559 1.46352 1.72766 1.29875 1.05119 1.14204 1.27659 1.25091 1.00088 1.00056 0.98940 1.25411 0.96296 0.95591 1.02814 1.86532 1.76896 1.36177 1.36569 0.93774 0.77454 0.86728 0.76359 1.84470 1.20970 1.46739 1.04705 1.26304 1.03026 1.03252 1.01299 1.20195 0.97873 1.01720 0.93055 1.23390 1.03694 0.94696 0.94270 0.91824 0.89558 0.91783 0.91271 0.88387 0.91057 0.91851 0.89516 0.92098 0.74509 0.89163 0.91772 0.88453 0.89708 0.73570 0.85307 0.74540 1.16856 1.18676 0.77857 0.80179 0.88489 0.87063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.58 8.37 71.98 0.60 0.03 16 2 C 0.13 0.41 1.13 -10.79 -0.01 0.40 16 3 C -0.14 0.25 8.85 71.98 0.64 0.89 16 4 C -0.18 -0.72 8.37 71.98 0.60 -0.11 16 5 O -0.37 -2.05 9.94 -55.48 -0.55 -2.60 16 6 C 0.64 4.16 8.06 129.79 1.05 5.21 16 7 O -0.60 -7.17 11.48 19.81 0.23 -6.94 16 8 N -0.69 0.49 5.36 -567.62 -3.04 -2.55 16 9 C 0.13 -0.42 4.24 45.52 0.19 -0.23 16 10 H 0.10 0.04 7.46 -2.39 -0.02 0.03 16 11 C -0.16 0.56 7.43 31.12 0.23 0.79 16 12 C -0.10 0.92 3.80 -10.27 -0.04 0.89 16 13 H 0.12 -1.25 8.12 -2.38 -0.02 -1.26 16 14 C 0.11 -0.92 5.56 86.38 0.48 -0.44 16 15 N -1.11 3.82 5.71 -187.49 -1.07 2.75 16 16 S 2.73 13.47 4.22 -56.49 -0.24 13.23 16 17 O -0.97 -8.74 16.05 -120.38 -1.93 -10.67 16 18 O -0.99 -13.04 17.13 -123.32 -2.11 -15.15 16 19 C -0.67 -1.09 5.71 21.22 0.12 -0.97 16 20 C -0.12 -0.25 5.77 24.59 0.14 -0.11 16 21 C -0.09 -0.29 2.42 71.24 0.17 -0.12 16 22 O -0.55 -3.18 9.67 -125.13 -1.21 -4.39 16 23 Si 0.76 -1.40 31.11 68.60 2.13 0.74 16 24 S 0.17 -0.42 20.87 -56.49 -1.18 -1.60 16 25 C -0.20 1.13 11.23 66.72 0.75 1.88 16 26 C -0.10 0.42 9.52 21.22 0.20 0.62 16 27 C -0.12 1.25 7.39 31.12 0.23 1.48 16 28 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.09 -0.01 8.14 -2.38 -0.02 -0.03 16 30 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 31 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 33 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 34 H 0.06 0.59 5.88 -2.39 -0.01 0.58 16 35 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.42 -2.30 8.84 -92.71 -0.82 -3.12 16 38 H 0.09 -0.26 7.90 -2.38 -0.02 -0.28 16 39 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.10 -1.32 5.39 -2.39 -0.01 -1.33 16 41 H 0.08 -0.56 7.33 -2.39 -0.02 -0.58 16 42 H 0.43 -2.57 8.65 -96.75 -0.84 -3.41 16 43 H 0.13 0.67 7.96 -2.39 -0.02 0.65 16 44 H 0.40 -0.69 8.43 -74.06 -0.62 -1.32 16 45 H -0.24 0.04 7.11 99.48 0.71 0.74 16 46 H -0.26 -0.99 7.11 99.48 0.71 -0.28 16 47 H 0.20 -2.40 8.06 -2.91 -0.02 -2.43 16 48 H 0.18 -1.91 4.83 -2.91 -0.01 -1.92 16 49 H 0.10 -1.15 8.14 -2.39 -0.02 -1.17 16 50 H 0.11 -1.46 8.08 -2.39 -0.02 -1.48 16 Total: 0.00 -28.79 419.71 -4.85 -33.64 By element: Atomic # 1 Polarization: -15.41 SS G_CDS: -1.23 Total: -16.65 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 5.36 Total: 10.21 kcal Atomic # 7 Polarization: 4.31 SS G_CDS: -4.11 Total: 0.19 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -5.58 Total: -39.76 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: 2.13 Total: 0.74 kcal Atomic # 16 Polarization: 13.04 SS G_CDS: -1.42 Total: 11.63 kcal Total: -28.79 -4.85 -33.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_12628480_14772022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.482 kcal (2) G-P(sol) polarization free energy of solvation -28.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds