Wall clock time and date at job start Tue Mar 9 2021 12:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46927 * 2 1 4 4 C 1.52996 * 109.47149 * 239.99657 * 2 1 3 5 5 O 1.45200 * 109.47019 * 119.99762 * 2 1 3 6 6 C 1.34638 * 116.99938 * 59.99762 * 5 2 1 7 7 O 1.21514 * 120.00036 * 0.02562 * 6 5 2 8 8 N 1.34776 * 120.00091 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00015 * 180.02562 * 8 6 5 10 10 H 1.09004 * 112.90889 * 336.25053 * 9 8 6 11 11 C 1.53784 * 113.61524 * 107.50411 * 9 8 6 12 12 C 1.53778 * 87.08081 * 139.98080 * 11 9 8 13 13 H 1.09004 * 113.61886 * 89.12045 * 12 11 9 14 14 C 1.53001 * 113.61526 * 220.01868 * 12 11 9 15 15 N 1.46505 * 109.47164 * 272.50042 * 14 12 11 16 16 S 1.65596 * 119.99718 * 165.00029 * 15 14 12 17 17 O 1.42106 * 106.40093 * 178.53611 * 16 15 14 18 18 O 1.42103 * 106.40450 * 311.45448 * 16 15 14 19 19 C 1.76199 * 107.22319 * 64.99719 * 16 15 14 20 20 C 1.33394 * 122.53811 * 90.02038 * 19 16 15 21 21 S 1.75887 * 109.59339 * 180.02562 * 20 19 16 22 22 C 1.75888 * 90.97028 * 0.02562 * 21 20 19 23 23 C 1.50702 * 125.20424 * 180.02562 * 22 21 20 24 24 O 1.42902 * 109.46920 * 245.02119 * 23 22 21 25 25 Si 1.86295 * 109.46930 * 5.02320 * 23 22 21 26 26 C 1.33397 * 109.59253 * 359.73088 * 22 21 20 27 27 C 1.53778 * 87.08449 * 334.56700 * 12 11 9 28 28 H 1.08999 * 109.47427 * 300.00251 * 1 2 3 29 29 H 1.09003 * 109.47328 * 60.00197 * 1 2 3 30 30 H 1.09006 * 109.47438 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46812 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47350 * 299.99413 * 3 2 1 33 33 H 1.08999 * 109.47271 * 59.99654 * 3 2 1 34 34 H 1.08997 * 109.47510 * 300.00397 * 4 2 1 35 35 H 1.09003 * 109.46886 * 59.99875 * 4 2 1 36 36 H 1.08997 * 109.47474 * 179.97438 * 4 2 1 37 37 H 0.96998 * 119.99607 * 0.02562 * 8 6 5 38 38 H 1.08993 * 113.61313 * 254.52676 * 11 9 8 39 39 H 1.09000 * 113.61578 * 25.43408 * 11 9 8 40 40 H 1.09008 * 109.46870 * 32.49758 * 14 12 11 41 41 H 1.09000 * 109.47055 * 152.49586 * 14 12 11 42 42 H 0.97001 * 119.99966 * 344.99574 * 15 14 12 43 43 H 1.07998 * 125.20525 * 359.97438 * 20 19 16 44 44 H 1.08999 * 109.46815 * 125.02250 * 23 22 21 45 45 H 0.96702 * 113.99691 * 179.97438 * 24 23 22 46 46 H 1.48500 * 110.00198 * 300.00191 * 25 23 22 47 47 H 1.48502 * 110.00077 * 61.32077 * 25 23 22 48 48 H 1.08004 * 122.54063 * 180.24031 * 26 22 21 49 49 H 1.08998 * 113.61879 * 270.88747 * 27 12 11 50 50 H 1.08997 * 113.69304 * 139.98833 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5037 8 7 2.0679 -2.6656 2.4168 9 6 1.6747 -4.0670 2.5828 10 1 0.7608 -4.3180 2.0442 11 6 2.8231 -5.0615 2.3442 12 6 2.2750 -5.8600 3.5387 13 1 1.5253 -6.6012 3.2615 14 6 3.3660 -6.4282 4.4486 15 7 3.7870 -7.7386 3.9466 16 16 5.1914 -8.4232 4.4955 17 8 5.2991 -9.6868 3.8544 18 8 6.1909 -7.4173 4.4036 19 6 4.9744 -8.7534 6.2126 20 6 4.4853 -9.9092 6.6648 21 16 4.4140 -9.8724 8.4218 22 6 5.0712 -8.2411 8.4442 23 6 5.3386 -7.4291 9.6852 24 8 4.4806 -6.2864 9.7008 25 14 5.0102 -8.4729 11.1929 26 6 5.3027 -7.8349 7.1948 27 6 1.6759 -4.5380 4.0467 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6765 1.9563 0.8899 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1299 -0.7209 -1.2494 37 1 2.6275 -2.2367 3.0829 38 1 2.7512 -5.5919 1.3947 39 1 3.8117 -4.6372 2.5194 40 1 4.2202 -5.7511 4.4580 41 1 2.9757 -6.5349 5.4607 42 1 3.2431 -8.2051 3.2929 43 1 4.1790 -10.7400 6.0465 44 1 6.3786 -7.1027 9.6888 45 1 4.5980 -5.7170 10.4736 46 1 3.5955 -8.9244 11.1998 47 1 5.9182 -9.6479 11.2049 48 1 5.7119 -6.8618 6.9667 49 1 2.3508 -3.9704 4.6874 50 1 0.6779 -4.6442 4.4720 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_12628480_15065232.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:25 Heat of formation + Delta-G solvation = -122.246118 kcal Electronic energy + Delta-G solvation = -33970.060821 eV Core-core repulsion = 29219.022790 eV Total energy + Delta-G solvation = -4751.038031 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.120 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.77571 -40.51880 -39.46381 -38.25304 -37.92864 -37.64422 -36.85790 -36.12603 -35.13282 -33.83967 -32.04400 -28.47798 -28.29661 -28.25659 -27.27726 -26.85481 -24.93500 -24.58741 -22.50080 -21.46204 -21.22724 -20.73930 -20.01937 -19.12769 -18.97460 -18.61042 -18.40656 -18.03957 -17.61378 -17.15474 -17.00647 -16.63387 -16.35308 -16.28035 -15.77047 -15.50481 -15.46734 -15.30175 -15.04571 -14.55533 -14.41372 -14.31487 -14.20391 -14.14923 -13.73375 -13.62104 -13.45466 -13.39873 -13.23159 -13.13241 -13.02737 -12.98911 -12.90012 -12.80674 -12.79245 -12.66758 -12.39543 -12.33152 -12.25013 -12.13253 -11.84900 -11.72374 -11.63646 -11.25902 -10.92070 -10.63096 -10.62761 -10.23277 -10.10437 -9.91597 -5.39234 -0.76990 -0.51932 0.26822 0.54127 0.94959 1.03370 1.25070 1.43176 1.73508 1.91543 2.03015 2.70548 3.08672 3.15715 3.27021 3.32248 3.39359 3.59293 3.64940 3.68339 3.78591 3.81076 3.86652 3.99958 4.00609 4.11441 4.23192 4.24579 4.33986 4.48587 4.55683 4.58541 4.59267 4.61814 4.65922 4.71665 4.80473 4.81113 4.82874 4.88175 4.91278 4.95507 4.96316 5.01234 5.10455 5.14422 5.37612 5.39622 5.52262 5.64532 5.83163 6.38612 6.46453 7.47087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.650 3.350 7 O -0.567 6.567 8 N -0.702 5.702 9 C 0.139 3.861 10 H 0.121 0.879 11 C -0.151 4.151 12 C -0.114 4.114 13 H 0.105 0.895 14 C 0.127 3.873 15 N -1.113 6.113 16 S 2.712 3.288 17 O -0.955 6.955 18 O -0.948 6.948 19 C -0.687 4.687 20 C -0.079 4.079 21 S 0.138 5.862 22 C -0.182 4.182 23 C -0.035 4.035 24 O -0.542 6.542 25 Si 0.671 3.329 26 C -0.041 4.041 27 C -0.137 4.137 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.407 0.593 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.421 0.579 43 H 0.187 0.813 44 H 0.088 0.912 45 H 0.386 0.614 46 H -0.235 1.235 47 H -0.239 1.239 48 H 0.159 0.841 49 H 0.094 0.906 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.402 3.020 6.232 7.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.404 3.596 7 O -0.456 6.456 8 N -0.360 5.360 9 C 0.035 3.965 10 H 0.139 0.861 11 C -0.189 4.189 12 C -0.134 4.134 13 H 0.123 0.877 14 C 0.001 3.999 15 N -0.874 5.874 16 S 2.798 3.202 17 O -0.945 6.945 18 O -0.938 6.938 19 C -0.786 4.786 20 C -0.218 4.218 21 S 0.401 5.599 22 C -0.299 4.299 23 C -0.148 4.148 24 O -0.350 6.350 25 Si 0.570 3.430 26 C -0.070 4.070 27 C -0.177 4.177 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.242 0.758 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.256 0.744 43 H 0.204 0.796 44 H 0.105 0.895 45 H 0.235 0.765 46 H -0.158 1.158 47 H -0.163 1.163 48 H 0.176 0.824 49 H 0.113 0.887 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.825 0.683 6.308 6.602 hybrid contribution 0.197 0.962 -0.856 1.302 sum -1.628 1.645 5.452 5.923 Atomic orbital electron populations 1.22521 0.93873 1.05022 1.02681 1.22108 0.94415 0.91564 0.81904 1.21877 1.02347 0.92376 1.03307 1.22519 1.01625 1.03447 0.96526 1.86309 1.71481 1.23528 1.46695 1.18181 0.78604 0.80538 0.82298 1.90912 1.41095 1.70528 1.43076 1.44761 1.55310 1.12176 1.23731 1.22548 0.99229 0.77556 0.97117 0.86136 1.23669 0.99314 0.96977 0.98979 1.22544 0.97845 0.96464 0.96576 0.87679 1.21358 0.98236 0.82960 0.97325 1.55487 1.45329 1.29553 1.57060 1.01566 0.72771 0.73265 0.72648 1.93619 1.85352 1.42139 1.73409 1.93604 1.55207 1.59355 1.85604 1.30090 1.18808 1.02446 1.27264 1.25933 0.97201 0.99872 0.98754 1.84511 1.59637 1.12225 1.03500 1.23688 1.09998 0.98374 0.97890 1.23982 0.96878 0.92817 1.01158 1.86489 1.61842 1.37140 1.49482 0.94730 0.82626 0.81614 0.84011 1.19614 0.98030 0.99735 0.89579 1.23411 1.02635 0.95623 0.95983 0.92136 0.90964 0.89446 0.91389 0.89955 0.91409 0.89423 0.90972 0.92113 0.75778 0.90332 0.88915 0.89716 0.91063 0.74394 0.79564 0.89457 0.76542 1.15814 1.16312 0.82367 0.88741 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.27 8.37 37.16 0.31 0.04 16 2 C 0.14 0.21 1.13 -90.62 -0.10 0.11 16 3 C -0.14 0.07 8.85 37.16 0.33 0.40 16 4 C -0.18 -0.30 8.37 37.16 0.31 0.01 16 5 O -0.37 -0.95 9.94 -40.32 -0.40 -1.35 16 6 C 0.65 1.85 8.06 54.05 0.44 2.29 16 7 O -0.57 -2.92 11.48 -19.28 -0.22 -3.14 16 8 N -0.70 0.17 5.36 -57.93 -0.31 -0.14 16 9 C 0.14 -0.19 4.24 -67.12 -0.28 -0.48 16 10 H 0.12 -0.01 7.47 -51.93 -0.39 -0.39 16 11 C -0.15 0.27 7.43 -25.92 -0.19 0.08 16 12 C -0.11 0.38 3.79 -89.81 -0.34 0.04 16 13 H 0.11 -0.43 8.12 -51.93 -0.42 -0.85 16 14 C 0.13 -0.33 6.06 -4.04 -0.02 -0.36 16 15 N -1.11 2.08 6.00 -10.61 -0.06 2.02 16 16 S 2.71 3.34 5.80 -107.50 -0.62 2.72 16 17 O -0.96 -3.77 17.64 -57.17 -1.01 -4.78 16 18 O -0.95 -3.85 17.10 -57.17 -0.98 -4.82 16 19 C -0.69 -0.71 5.86 -41.21 -0.24 -0.96 16 20 C -0.08 -0.04 10.70 29.04 0.31 0.27 16 21 S 0.14 0.15 20.60 -107.50 -2.21 -2.07 16 22 C -0.18 -0.23 5.73 -36.00 -0.21 -0.43 16 23 C -0.04 0.04 2.95 36.01 0.11 0.15 16 24 O -0.54 0.83 12.86 -35.23 -0.45 0.37 16 25 Si 0.67 -1.33 30.98 -169.99 -5.27 -6.59 16 26 C -0.04 -0.05 9.59 -41.21 -0.40 -0.45 16 27 C -0.14 0.48 7.39 -25.92 -0.19 0.29 16 28 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 30 H 0.09 0.31 5.88 -51.93 -0.31 0.00 16 31 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 32 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 33 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 34 H 0.09 0.33 5.88 -51.93 -0.31 0.02 16 35 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 36 H 0.06 0.09 8.14 -51.93 -0.42 -0.34 16 37 H 0.41 -0.91 8.84 -40.82 -0.36 -1.27 16 38 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 39 H 0.09 -0.14 7.90 -51.93 -0.41 -0.55 16 40 H 0.08 -0.20 7.45 -51.92 -0.39 -0.59 16 41 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 42 H 0.42 -1.49 8.64 -34.47 -0.30 -1.79 16 43 H 0.19 -0.32 8.00 -52.49 -0.42 -0.74 16 44 H 0.09 -0.25 7.96 -51.93 -0.41 -0.66 16 45 H 0.39 -2.52 8.74 45.56 0.40 -2.12 16 46 H -0.23 -0.20 7.11 56.52 0.40 0.21 16 47 H -0.24 -0.11 7.11 56.52 0.40 0.29 16 48 H 0.16 0.05 7.96 -52.48 -0.42 -0.37 16 49 H 0.09 -0.41 8.08 -51.93 -0.42 -0.83 16 50 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 LS Contribution 432.83 15.07 6.52 6.52 Total: 0.00 -12.02 432.83 -12.76 -24.79 By element: Atomic # 1 Polarization: -6.97 SS G_CDS: -7.57 Total: -14.54 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -0.18 Total: 1.01 kcal Atomic # 7 Polarization: 2.25 SS G_CDS: -0.37 Total: 1.88 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -3.06 Total: -13.72 kcal Atomic # 14 Polarization: -1.33 SS G_CDS: -5.27 Total: -6.59 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -2.84 Total: 0.65 kcal Total LS contribution 6.52 Total: 6.52 kcal Total: -12.02 -12.76 -24.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_12628480_15065232.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.461 kcal (2) G-P(sol) polarization free energy of solvation -12.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds