Wall clock time and date at job start Tue Mar 9 2021 12:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46927 * 2 1 4 4 C 1.52996 * 109.47149 * 239.99657 * 2 1 3 5 5 O 1.45200 * 109.47019 * 119.99762 * 2 1 3 6 6 C 1.34638 * 116.99938 * 59.99762 * 5 2 1 7 7 O 1.21514 * 120.00036 * 0.02562 * 6 5 2 8 8 N 1.34776 * 120.00091 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00015 * 180.02562 * 8 6 5 10 10 H 1.09004 * 112.90889 * 336.25053 * 9 8 6 11 11 C 1.53784 * 113.61524 * 107.50411 * 9 8 6 12 12 C 1.53778 * 87.08081 * 139.98080 * 11 9 8 13 13 H 1.09004 * 113.61886 * 89.12045 * 12 11 9 14 14 C 1.53001 * 113.61526 * 220.01868 * 12 11 9 15 15 N 1.46505 * 109.47164 * 272.50042 * 14 12 11 16 16 S 1.65596 * 119.99718 * 165.00029 * 15 14 12 17 17 O 1.42106 * 106.40093 * 178.53611 * 16 15 14 18 18 O 1.42103 * 106.40450 * 311.45448 * 16 15 14 19 19 C 1.76199 * 107.22319 * 64.99719 * 16 15 14 20 20 C 1.33394 * 122.53811 * 90.02038 * 19 16 15 21 21 S 1.75887 * 109.59339 * 180.02562 * 20 19 16 22 22 C 1.75888 * 90.97028 * 0.02562 * 21 20 19 23 23 C 1.50702 * 125.20424 * 180.02562 * 22 21 20 24 24 O 1.42902 * 109.46920 * 245.02119 * 23 22 21 25 25 Si 1.86295 * 109.46930 * 5.02320 * 23 22 21 26 26 C 1.33397 * 109.59253 * 359.73088 * 22 21 20 27 27 C 1.53778 * 87.08449 * 334.56700 * 12 11 9 28 28 H 1.08999 * 109.47427 * 300.00251 * 1 2 3 29 29 H 1.09003 * 109.47328 * 60.00197 * 1 2 3 30 30 H 1.09006 * 109.47438 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46812 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47350 * 299.99413 * 3 2 1 33 33 H 1.08999 * 109.47271 * 59.99654 * 3 2 1 34 34 H 1.08997 * 109.47510 * 300.00397 * 4 2 1 35 35 H 1.09003 * 109.46886 * 59.99875 * 4 2 1 36 36 H 1.08997 * 109.47474 * 179.97438 * 4 2 1 37 37 H 0.96998 * 119.99607 * 0.02562 * 8 6 5 38 38 H 1.08993 * 113.61313 * 254.52676 * 11 9 8 39 39 H 1.09000 * 113.61578 * 25.43408 * 11 9 8 40 40 H 1.09008 * 109.46870 * 32.49758 * 14 12 11 41 41 H 1.09000 * 109.47055 * 152.49586 * 14 12 11 42 42 H 0.97001 * 119.99966 * 344.99574 * 15 14 12 43 43 H 1.07998 * 125.20525 * 359.97438 * 20 19 16 44 44 H 1.08999 * 109.46815 * 125.02250 * 23 22 21 45 45 H 0.96702 * 113.99691 * 179.97438 * 24 23 22 46 46 H 1.48500 * 110.00198 * 300.00191 * 25 23 22 47 47 H 1.48502 * 110.00077 * 61.32077 * 25 23 22 48 48 H 1.08004 * 122.54063 * 180.24031 * 26 22 21 49 49 H 1.08998 * 113.61879 * 270.88747 * 27 12 11 50 50 H 1.08997 * 113.69304 * 139.98833 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5037 8 7 2.0679 -2.6656 2.4168 9 6 1.6747 -4.0670 2.5828 10 1 0.7608 -4.3180 2.0442 11 6 2.8231 -5.0615 2.3442 12 6 2.2750 -5.8600 3.5387 13 1 1.5253 -6.6012 3.2615 14 6 3.3660 -6.4282 4.4486 15 7 3.7870 -7.7386 3.9466 16 16 5.1914 -8.4232 4.4955 17 8 5.2991 -9.6868 3.8544 18 8 6.1909 -7.4173 4.4036 19 6 4.9744 -8.7534 6.2126 20 6 4.4853 -9.9092 6.6648 21 16 4.4140 -9.8724 8.4218 22 6 5.0712 -8.2411 8.4442 23 6 5.3386 -7.4291 9.6852 24 8 4.4806 -6.2864 9.7008 25 14 5.0102 -8.4729 11.1929 26 6 5.3027 -7.8349 7.1948 27 6 1.6759 -4.5380 4.0467 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6765 1.9563 0.8899 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1299 -0.7209 -1.2494 37 1 2.6275 -2.2367 3.0829 38 1 2.7512 -5.5919 1.3947 39 1 3.8117 -4.6372 2.5194 40 1 4.2202 -5.7511 4.4580 41 1 2.9757 -6.5349 5.4607 42 1 3.2431 -8.2051 3.2929 43 1 4.1790 -10.7400 6.0465 44 1 6.3786 -7.1027 9.6888 45 1 4.5980 -5.7170 10.4736 46 1 3.5955 -8.9244 11.1998 47 1 5.9182 -9.6479 11.2049 48 1 5.7119 -6.8618 6.9667 49 1 2.3508 -3.9704 4.6874 50 1 0.6779 -4.6442 4.4720 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_12628480_15065232.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:24 Heat of formation + Delta-G solvation = -127.993326 kcal Electronic energy + Delta-G solvation = -33970.310039 eV Core-core repulsion = 29219.022790 eV Total energy + Delta-G solvation = -4751.287248 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.120 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.88923 -40.42962 -39.45789 -38.45454 -38.04221 -37.51628 -37.07112 -36.11383 -35.23316 -33.86195 -32.02542 -28.38323 -28.38124 -28.30212 -27.24744 -26.66854 -24.94403 -24.59306 -22.48245 -21.45520 -21.26269 -20.73329 -20.04996 -19.18540 -19.02591 -18.51172 -18.38504 -18.07552 -17.70093 -17.21653 -17.13437 -16.60566 -16.28518 -16.22440 -15.77783 -15.50653 -15.47629 -15.36450 -15.01679 -14.57423 -14.49527 -14.31549 -14.21028 -14.14527 -13.73077 -13.50380 -13.38950 -13.36445 -13.36113 -13.26468 -13.15576 -13.01705 -12.91210 -12.90054 -12.87468 -12.66922 -12.48174 -12.38178 -12.24662 -12.05751 -11.91269 -11.58261 -11.50708 -11.40019 -11.10735 -10.53780 -10.50371 -10.22636 -10.11373 -9.96609 -5.25441 -0.84510 -0.57266 0.23683 0.50607 0.90891 1.15232 1.19490 1.53609 1.73780 1.83971 2.02396 2.62611 3.11568 3.16691 3.38000 3.47621 3.52536 3.72052 3.73320 3.77809 3.79174 3.83851 3.87142 3.93459 4.12562 4.16692 4.38918 4.40411 4.48543 4.53025 4.56360 4.59776 4.66451 4.75179 4.75770 4.79524 4.80460 4.83316 4.86456 4.87427 4.92544 4.98472 5.02161 5.10877 5.13091 5.23843 5.25706 5.32741 5.54241 5.61195 6.02497 6.41572 6.83572 7.34761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.642 3.358 7 O -0.596 6.596 8 N -0.690 5.690 9 C 0.131 3.869 10 H 0.105 0.895 11 C -0.153 4.153 12 C -0.103 4.103 13 H 0.116 0.884 14 C 0.122 3.878 15 N -1.102 6.102 16 S 2.731 3.269 17 O -0.985 6.985 18 O -0.978 6.978 19 C -0.690 4.690 20 C -0.078 4.078 21 S 0.116 5.884 22 C -0.194 4.194 23 C -0.041 4.041 24 O -0.556 6.556 25 Si 0.752 3.248 26 C -0.051 4.051 27 C -0.124 4.124 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.417 0.583 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.430 0.570 43 H 0.205 0.795 44 H 0.108 0.892 45 H 0.407 0.593 46 H -0.275 1.275 47 H -0.275 1.275 48 H 0.166 0.834 49 H 0.108 0.892 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.445 4.127 7.149 8.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.395 3.605 7 O -0.487 6.487 8 N -0.349 5.349 9 C 0.027 3.973 10 H 0.123 0.877 11 C -0.192 4.192 12 C -0.124 4.124 13 H 0.134 0.866 14 C -0.003 4.003 15 N -0.866 5.866 16 S 2.818 3.182 17 O -0.975 6.975 18 O -0.968 6.968 19 C -0.789 4.789 20 C -0.216 4.216 21 S 0.380 5.620 22 C -0.312 4.312 23 C -0.154 4.154 24 O -0.367 6.367 25 Si 0.656 3.344 26 C -0.079 4.079 27 C -0.163 4.163 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.255 0.745 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.267 0.733 43 H 0.222 0.778 44 H 0.126 0.874 45 H 0.260 0.740 46 H -0.201 1.201 47 H -0.201 1.201 48 H 0.184 0.816 49 H 0.126 0.874 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.846 1.820 7.243 7.693 hybrid contribution 0.167 0.605 -1.130 1.293 sum -1.678 2.426 6.113 6.787 Atomic orbital electron populations 1.22468 0.93986 1.03684 1.03516 1.22341 0.94497 0.92583 0.81516 1.21889 1.02423 0.90897 1.04264 1.22470 1.01568 1.02249 0.97434 1.86314 1.71553 1.23444 1.47210 1.18465 0.78595 0.80682 0.82714 1.90897 1.42476 1.71054 1.44260 1.44815 1.54716 1.12401 1.22961 1.22646 0.98800 0.76991 0.98818 0.87714 1.23677 0.99090 0.97125 0.99290 1.22502 0.97666 0.96697 0.95526 0.86604 1.21515 0.98443 0.82307 0.98068 1.55217 1.44552 1.29803 1.57039 1.00740 0.72863 0.72223 0.72390 1.93573 1.86106 1.43560 1.74273 1.93563 1.57037 1.60056 1.86122 1.30029 1.19249 1.02777 1.26878 1.26189 0.96655 1.00246 0.98543 1.84613 1.60090 1.13038 1.04307 1.24063 1.09746 0.98398 0.98949 1.24100 0.98077 0.93098 1.00080 1.86438 1.61880 1.37226 1.51144 0.93839 0.78543 0.79560 0.82467 1.19775 0.98299 1.00160 0.89682 1.23382 1.03427 0.95005 0.94501 0.91868 0.89520 0.91795 0.91252 0.88345 0.91102 0.91823 0.89498 0.92067 0.74550 0.91350 0.89051 0.89808 0.89798 0.73268 0.77845 0.87424 0.74041 1.20118 1.20081 0.81635 0.87380 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.62 8.37 71.98 0.60 -0.02 16 2 C 0.13 0.43 1.13 -10.80 -0.01 0.42 16 3 C -0.14 0.23 8.85 71.98 0.64 0.87 16 4 C -0.18 -0.72 8.37 71.98 0.60 -0.11 16 5 O -0.37 -2.17 9.94 -55.48 -0.55 -2.72 16 6 C 0.64 4.41 8.06 129.79 1.05 5.46 16 7 O -0.60 -7.29 11.48 19.80 0.23 -7.07 16 8 N -0.69 0.01 5.36 -567.59 -3.04 -3.04 16 9 C 0.13 -0.31 4.24 45.52 0.19 -0.12 16 10 H 0.10 0.12 7.47 -2.39 -0.02 0.10 16 11 C -0.15 0.51 7.43 31.12 0.23 0.74 16 12 C -0.10 0.76 3.79 -10.27 -0.04 0.72 16 13 H 0.12 -1.07 8.12 -2.38 -0.02 -1.08 16 14 C 0.12 -0.74 6.06 86.38 0.52 -0.22 16 15 N -1.10 4.43 6.00 -187.47 -1.12 3.31 16 16 S 2.73 7.62 5.80 -56.49 -0.33 7.29 16 17 O -0.98 -8.36 17.64 -128.00 -2.26 -10.62 16 18 O -0.98 -8.44 17.10 -128.00 -2.19 -10.63 16 19 C -0.69 -1.48 5.86 21.22 0.12 -1.35 16 20 C -0.08 -0.09 10.70 66.72 0.71 0.63 16 21 S 0.12 0.30 20.60 -56.49 -1.16 -0.86 16 22 C -0.19 -0.45 5.73 24.59 0.14 -0.31 16 23 C -0.04 0.13 2.95 71.24 0.21 0.34 16 24 O -0.56 2.45 12.86 -148.98 -1.92 0.53 16 25 Si 0.75 -3.03 30.98 68.60 2.13 -0.91 16 26 C -0.05 -0.12 9.59 21.22 0.20 0.08 16 27 C -0.12 1.00 7.39 31.12 0.23 1.23 16 28 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.09 0.00 8.14 -2.39 -0.02 -0.01 16 30 H 0.06 0.56 5.88 -2.38 -0.01 0.54 16 31 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 33 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 34 H 0.06 0.59 5.88 -2.39 -0.01 0.58 16 35 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.42 -1.93 8.84 -92.71 -0.82 -2.75 16 38 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.09 -0.26 7.90 -2.39 -0.02 -0.28 16 40 H 0.08 -0.45 7.45 -2.38 -0.02 -0.47 16 41 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 42 H 0.43 -3.19 8.64 -96.74 -0.84 -4.03 16 43 H 0.20 -0.70 8.00 -2.91 -0.02 -0.72 16 44 H 0.11 -0.79 7.96 -2.39 -0.02 -0.81 16 45 H 0.41 -6.04 8.74 -74.06 -0.65 -6.68 16 46 H -0.28 -0.70 7.11 99.48 0.71 0.00 16 47 H -0.27 -0.45 7.11 99.48 0.71 0.25 16 48 H 0.17 0.05 7.96 -2.91 -0.02 0.02 16 49 H 0.11 -1.12 8.08 -2.39 -0.02 -1.14 16 50 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 Total: 0.00 -28.82 432.83 -6.08 -34.90 By element: Atomic # 1 Polarization: -17.28 SS G_CDS: -1.27 Total: -18.55 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 5.41 Total: 8.36 kcal Atomic # 7 Polarization: 4.44 SS G_CDS: -4.17 Total: 0.27 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -6.69 Total: -30.50 kcal Atomic # 14 Polarization: -3.03 SS G_CDS: 2.13 Total: -0.91 kcal Atomic # 16 Polarization: 7.92 SS G_CDS: -1.49 Total: 6.43 kcal Total: -28.82 -6.08 -34.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_12628480_15065232.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.098 kcal (2) G-P(sol) polarization free energy of solvation -28.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds