Wall clock time and date at job start Tue Mar 9 2021 12:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46907 * 2 1 4 4 C 1.53000 * 109.46775 * 240.00214 * 2 1 3 5 5 O 1.45196 * 109.47187 * 120.00460 * 2 1 3 6 6 C 1.34636 * 117.00489 * 60.00081 * 5 2 1 7 7 O 1.21517 * 119.99560 * 359.97438 * 6 5 2 8 8 N 1.34770 * 120.00292 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00157 * 179.97438 * 8 6 5 10 10 H 1.08996 * 112.84800 * 23.80973 * 9 8 6 11 11 C 1.53777 * 113.61160 * 155.00230 * 9 8 6 12 12 C 1.53781 * 87.08336 * 89.20358 * 11 9 8 13 13 H 1.09002 * 113.61228 * 270.88201 * 12 11 9 14 14 C 1.53000 * 113.61707 * 140.06298 * 12 11 9 15 15 N 1.46499 * 109.46974 * 176.53042 * 14 12 11 16 16 S 1.65602 * 119.99694 * 164.99712 * 15 14 12 17 17 O 1.42104 * 106.40102 * 178.53477 * 16 15 14 18 18 O 1.42090 * 106.40487 * 311.46279 * 16 15 14 19 19 C 1.76208 * 107.21807 * 65.00126 * 16 15 14 20 20 C 1.33384 * 122.53791 * 269.71102 * 19 16 15 21 21 S 1.75890 * 109.59266 * 179.90392 * 20 19 16 22 22 C 1.75882 * 90.96983 * 0.29816 * 21 20 19 23 23 C 1.50700 * 125.20657 * 179.86497 * 22 21 20 24 24 O 1.42894 * 109.47585 * 244.96154 * 23 22 21 25 25 Si 1.86305 * 109.46753 * 4.96187 * 23 22 21 26 26 C 1.33392 * 109.59591 * 359.82850 * 22 21 20 27 27 C 1.53775 * 113.69461 * 252.53673 * 9 8 6 28 28 H 1.08997 * 109.47037 * 299.99517 * 1 2 3 29 29 H 1.08995 * 109.47814 * 59.99757 * 1 2 3 30 30 H 1.09003 * 109.47226 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46981 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47196 * 300.00184 * 3 2 1 33 33 H 1.08997 * 109.46878 * 60.00385 * 3 2 1 34 34 H 1.08998 * 109.47488 * 300.00201 * 4 2 1 35 35 H 1.09008 * 109.47137 * 59.99720 * 4 2 1 36 36 H 1.09001 * 109.47317 * 179.97438 * 4 2 1 37 37 H 0.97006 * 119.99979 * 359.97438 * 8 6 5 38 38 H 1.08997 * 113.61941 * 334.65065 * 11 9 8 39 39 H 1.09009 * 113.68972 * 203.76145 * 11 9 8 40 40 H 1.09001 * 109.47043 * 296.52693 * 14 12 11 41 41 H 1.08992 * 109.47277 * 56.52863 * 14 12 11 42 42 H 0.97001 * 120.00215 * 344.99989 * 15 14 12 43 43 H 1.08000 * 125.20525 * 0.02562 * 20 19 16 44 44 H 1.08997 * 109.47117 * 124.95682 * 23 22 21 45 45 H 0.96707 * 114.00067 * 59.99299 * 24 23 22 46 46 H 1.48498 * 110.00039 * 180.02562 * 25 23 22 47 47 H 1.48502 * 109.99843 * 301.31815 * 25 23 22 48 48 H 1.07995 * 122.54209 * 179.97438 * 26 22 21 49 49 H 1.08993 * 113.61636 * 156.31970 * 27 9 8 50 50 H 1.09008 * 113.61006 * 25.42212 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5038 8 7 2.0682 -2.6658 2.4164 9 6 1.6741 -4.0670 2.5829 10 1 1.4211 -4.5504 1.6394 11 6 2.6477 -4.8816 3.4508 12 6 1.8065 -4.4478 4.6629 13 1 2.1351 -3.5091 5.1089 14 6 1.6030 -5.5575 5.6964 15 7 0.8647 -5.0258 6.8447 16 16 0.1784 -6.0617 7.9394 17 8 -0.4255 -5.2492 8.9366 18 8 -0.5399 -7.0266 7.1830 19 6 1.4920 -6.9282 8.7320 20 6 1.9717 -8.0835 8.2690 21 16 3.2709 -8.6439 9.3139 22 6 3.0779 -7.2407 10.3565 23 6 3.8925 -6.9580 11.5924 24 8 3.0447 -7.0005 12.7419 25 14 5.2316 -8.2423 11.7606 26 6 2.1006 -6.4644 9.8856 27 6 0.6280 -4.2876 3.6882 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7488 -1.2494 35 1 1.6765 -0.2073 -2.1393 36 1 3.1299 -0.7209 -1.2496 37 1 2.6284 -2.2371 3.0823 38 1 3.6626 -4.4843 3.4590 39 1 2.6145 -5.9539 3.2576 40 1 1.0371 -6.3734 5.2468 41 1 2.5730 -5.9276 6.0280 42 1 0.7778 -4.0671 6.9637 43 1 1.6179 -8.5955 7.3863 44 1 4.3451 -5.9698 11.5111 45 1 2.6075 -7.8525 12.8770 46 1 6.0418 -7.9751 12.9761 47 1 4.6288 -9.5971 11.8404 48 1 1.8061 -5.5442 10.3680 49 1 0.0414 -5.1971 3.5589 50 1 0.0123 -3.4104 3.8879 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_12628560_15065232.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:52 Heat of formation + Delta-G solvation = -122.107874 kcal Electronic energy + Delta-G solvation = -33801.649300 eV Core-core repulsion = 29050.617264 eV Total energy + Delta-G solvation = -4751.032036 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.120 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.87757 -40.61373 -39.57454 -38.27040 -37.93071 -37.71123 -36.86669 -36.16663 -35.15551 -33.72865 -31.92114 -28.56505 -28.32856 -28.28733 -27.28302 -26.88983 -24.97817 -24.50593 -23.21398 -21.53183 -21.10763 -20.71090 -19.97306 -19.29082 -19.20805 -18.48467 -18.00860 -17.76185 -17.55280 -17.25552 -17.08472 -16.69585 -16.48597 -15.96554 -15.85960 -15.71794 -15.47039 -15.35966 -15.13304 -14.98886 -14.47660 -14.29976 -14.24084 -14.07543 -13.88218 -13.76198 -13.49912 -13.40584 -13.30607 -13.17678 -13.05467 -13.02303 -12.92983 -12.85290 -12.82876 -12.52140 -12.40402 -12.36344 -12.27385 -12.12023 -11.72427 -11.61420 -11.53630 -11.29788 -10.97332 -10.89335 -10.64069 -10.31438 -10.18739 -9.92320 -5.22359 -0.78398 -0.54357 0.25193 0.51226 0.91937 1.09239 1.14811 1.40139 1.76970 1.86236 2.00346 2.69471 3.08158 3.11880 3.22619 3.27272 3.32793 3.50096 3.61078 3.66098 3.74923 3.77529 3.83239 3.97015 4.00004 4.13008 4.20658 4.31367 4.33258 4.48261 4.52774 4.55832 4.56786 4.58234 4.63051 4.66355 4.76159 4.78180 4.83668 4.86757 4.90605 4.93177 4.94619 4.99788 5.00592 5.09168 5.34191 5.36700 5.48624 5.60440 5.80317 6.18776 6.39128 7.41607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.652 3.348 7 O -0.564 6.564 8 N -0.695 5.695 9 C 0.136 3.864 10 H 0.110 0.890 11 C -0.137 4.137 12 C -0.119 4.119 13 H 0.100 0.900 14 C 0.124 3.876 15 N -1.113 6.113 16 S 2.710 3.290 17 O -0.951 6.951 18 O -0.952 6.952 19 C -0.686 4.686 20 C -0.087 4.087 21 S 0.159 5.841 22 C -0.227 4.227 23 C -0.034 4.034 24 O -0.521 6.521 25 Si 0.651 3.349 26 C -0.042 4.042 27 C -0.149 4.149 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.406 0.594 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.421 0.579 43 H 0.186 0.814 44 H 0.130 0.870 45 H 0.379 0.621 46 H -0.233 1.233 47 H -0.239 1.239 48 H 0.157 0.843 49 H 0.100 0.900 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.678 0.171 -2.294 7.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.406 3.594 7 O -0.452 6.452 8 N -0.354 5.354 9 C 0.031 3.969 10 H 0.128 0.872 11 C -0.176 4.176 12 C -0.139 4.139 13 H 0.118 0.882 14 C -0.002 4.002 15 N -0.874 5.874 16 S 2.796 3.204 17 O -0.941 6.941 18 O -0.942 6.942 19 C -0.785 4.785 20 C -0.226 4.226 21 S 0.423 5.577 22 C -0.345 4.345 23 C -0.146 4.146 24 O -0.328 6.328 25 Si 0.549 3.451 26 C -0.070 4.070 27 C -0.188 4.188 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.241 0.759 38 H 0.099 0.901 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.256 0.744 43 H 0.203 0.797 44 H 0.147 0.853 45 H 0.227 0.773 46 H -0.156 1.156 47 H -0.163 1.163 48 H 0.174 0.826 49 H 0.118 0.882 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.990 -1.639 -2.048 7.466 hybrid contribution -1.007 1.389 1.019 1.995 sum 5.983 -0.250 -1.029 6.076 Atomic orbital electron populations 1.22523 0.93810 1.05079 1.02731 1.22124 0.94466 0.91542 0.81821 1.21879 1.02321 0.92348 1.03357 1.22524 1.01594 1.03460 0.96548 1.86301 1.71505 1.23381 1.46789 1.18075 0.78672 0.80650 0.82017 1.90926 1.40721 1.70369 1.43212 1.44353 1.55406 1.11855 1.23753 1.21784 0.95848 0.79471 0.99794 0.87189 1.23373 0.98715 1.01386 0.94105 1.22851 0.97974 0.98974 0.94080 0.88205 1.21384 0.96181 0.96892 0.85732 1.55489 1.72913 1.20686 1.38313 1.01591 0.72886 0.73145 0.72759 1.93622 1.73623 1.68091 1.58807 1.93608 1.67985 1.61853 1.70766 1.30069 1.26026 1.10785 1.11660 1.25935 0.97300 0.96784 1.02586 1.84452 1.32076 1.22849 1.18348 1.25019 1.05453 1.00006 1.04030 1.24418 0.97737 1.10957 0.81519 1.86651 1.62858 1.38931 1.44347 0.95329 0.81700 0.77564 0.90481 1.19622 0.93703 1.00827 0.92888 1.23602 0.96612 1.03605 0.94981 0.92125 0.90914 0.89401 0.91397 0.89916 0.91393 0.89414 0.90919 0.92117 0.75887 0.90060 0.87719 0.89690 0.91267 0.74397 0.79679 0.85272 0.77327 1.15566 1.16349 0.82557 0.88167 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.21 8.37 37.16 0.31 0.10 16 2 C 0.14 0.14 1.13 -90.62 -0.10 0.03 16 3 C -0.14 0.14 8.85 37.16 0.33 0.47 16 4 C -0.18 -0.18 8.37 37.16 0.31 0.13 16 5 O -0.37 -0.69 9.94 -40.31 -0.40 -1.09 16 6 C 0.65 1.39 8.06 54.05 0.44 1.82 16 7 O -0.56 -2.60 11.48 -19.29 -0.22 -2.82 16 8 N -0.70 0.81 5.27 -57.94 -0.31 0.50 16 9 C 0.14 -0.29 4.32 -67.12 -0.29 -0.58 16 10 H 0.11 -0.06 7.46 -51.93 -0.39 -0.44 16 11 C -0.14 0.64 7.39 -25.92 -0.19 0.45 16 12 C -0.12 0.54 3.66 -89.81 -0.33 0.21 16 13 H 0.10 -0.53 8.14 -51.93 -0.42 -0.95 16 14 C 0.12 -0.52 6.05 -4.04 -0.02 -0.54 16 15 N -1.11 3.21 6.00 -10.62 -0.06 3.14 16 16 S 2.71 1.09 5.80 -107.50 -0.62 0.46 16 17 O -0.95 -3.70 17.63 -57.17 -1.01 -4.71 16 18 O -0.95 -2.89 17.10 -57.17 -0.98 -3.86 16 19 C -0.69 0.28 5.86 -41.21 -0.24 0.04 16 20 C -0.09 0.14 10.70 29.04 0.31 0.45 16 21 S 0.16 -0.29 20.60 -107.50 -2.21 -2.51 16 22 C -0.23 0.16 5.70 -36.00 -0.21 -0.04 16 23 C -0.03 0.04 2.96 36.01 0.11 0.15 16 24 O -0.52 -0.33 12.88 -35.23 -0.45 -0.78 16 25 Si 0.65 -1.19 30.98 -169.99 -5.27 -6.46 16 26 C -0.04 0.00 9.59 -41.21 -0.40 -0.40 16 27 C -0.15 0.39 7.44 -25.92 -0.19 0.20 16 28 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.09 0.29 5.88 -51.93 -0.31 -0.02 16 31 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 32 H 0.08 -0.18 8.14 -51.93 -0.42 -0.61 16 33 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 34 H 0.09 0.27 5.88 -51.93 -0.31 -0.04 16 35 H 0.07 -0.02 8.14 -51.92 -0.42 -0.44 16 36 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 37 H 0.41 -1.31 8.81 -40.82 -0.36 -1.67 16 38 H 0.08 -0.41 8.14 -51.93 -0.42 -0.83 16 39 H 0.10 -0.58 8.10 -51.92 -0.42 -1.01 16 40 H 0.08 -0.34 7.49 -51.93 -0.39 -0.73 16 41 H 0.07 -0.39 8.14 -51.93 -0.42 -0.81 16 42 H 0.42 -1.76 8.65 -34.47 -0.30 -2.05 16 43 H 0.19 -0.69 8.00 -52.49 -0.42 -1.11 16 44 H 0.13 -0.30 7.96 -51.93 -0.41 -0.71 16 45 H 0.38 -0.80 8.70 45.56 0.40 -0.40 16 46 H -0.23 -0.24 7.11 56.52 0.40 0.17 16 47 H -0.24 0.01 7.11 56.52 0.40 0.42 16 48 H 0.16 0.01 7.96 -52.49 -0.42 -0.40 16 49 H 0.10 -0.27 7.92 -51.93 -0.41 -0.68 16 50 H 0.08 -0.11 8.14 -51.92 -0.42 -0.53 16 LS Contribution 432.72 15.07 6.52 6.52 Total: 0.00 -11.38 432.72 -12.76 -24.14 By element: Atomic # 1 Polarization: -7.46 SS G_CDS: -7.58 Total: -15.04 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -0.17 Total: 2.49 kcal Atomic # 7 Polarization: 4.01 SS G_CDS: -0.37 Total: 3.65 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -3.06 Total: -13.26 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: -5.27 Total: -6.46 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.84 Total: -2.04 kcal Total LS contribution 6.52 Total: 6.52 kcal Total: -11.38 -12.76 -24.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_12628560_15065232.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.966 kcal (2) G-P(sol) polarization free energy of solvation -11.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds