Wall clock time and date at job start Tue Mar 9 2021 12:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46907 * 2 1 4 4 C 1.53000 * 109.46775 * 240.00214 * 2 1 3 5 5 O 1.45196 * 109.47187 * 120.00460 * 2 1 3 6 6 C 1.34636 * 117.00489 * 60.00081 * 5 2 1 7 7 O 1.21517 * 119.99560 * 359.97438 * 6 5 2 8 8 N 1.34770 * 120.00292 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00157 * 179.97438 * 8 6 5 10 10 H 1.08996 * 112.84800 * 23.80973 * 9 8 6 11 11 C 1.53777 * 113.61160 * 155.00230 * 9 8 6 12 12 C 1.53781 * 87.08336 * 89.20358 * 11 9 8 13 13 H 1.09002 * 113.61228 * 270.88201 * 12 11 9 14 14 C 1.53000 * 113.61707 * 140.06298 * 12 11 9 15 15 N 1.46499 * 109.46974 * 176.53042 * 14 12 11 16 16 S 1.65602 * 119.99694 * 164.99712 * 15 14 12 17 17 O 1.42104 * 106.40102 * 178.53477 * 16 15 14 18 18 O 1.42090 * 106.40487 * 311.46279 * 16 15 14 19 19 C 1.76208 * 107.21807 * 65.00126 * 16 15 14 20 20 C 1.33384 * 122.53791 * 269.71102 * 19 16 15 21 21 S 1.75890 * 109.59266 * 179.90392 * 20 19 16 22 22 C 1.75882 * 90.96983 * 0.29816 * 21 20 19 23 23 C 1.50700 * 125.20657 * 179.86497 * 22 21 20 24 24 O 1.42894 * 109.47585 * 244.96154 * 23 22 21 25 25 Si 1.86305 * 109.46753 * 4.96187 * 23 22 21 26 26 C 1.33392 * 109.59591 * 359.82850 * 22 21 20 27 27 C 1.53775 * 113.69461 * 252.53673 * 9 8 6 28 28 H 1.08997 * 109.47037 * 299.99517 * 1 2 3 29 29 H 1.08995 * 109.47814 * 59.99757 * 1 2 3 30 30 H 1.09003 * 109.47226 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46981 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47196 * 300.00184 * 3 2 1 33 33 H 1.08997 * 109.46878 * 60.00385 * 3 2 1 34 34 H 1.08998 * 109.47488 * 300.00201 * 4 2 1 35 35 H 1.09008 * 109.47137 * 59.99720 * 4 2 1 36 36 H 1.09001 * 109.47317 * 179.97438 * 4 2 1 37 37 H 0.97006 * 119.99979 * 359.97438 * 8 6 5 38 38 H 1.08997 * 113.61941 * 334.65065 * 11 9 8 39 39 H 1.09009 * 113.68972 * 203.76145 * 11 9 8 40 40 H 1.09001 * 109.47043 * 296.52693 * 14 12 11 41 41 H 1.08992 * 109.47277 * 56.52863 * 14 12 11 42 42 H 0.97001 * 120.00215 * 344.99989 * 15 14 12 43 43 H 1.08000 * 125.20525 * 0.02562 * 20 19 16 44 44 H 1.08997 * 109.47117 * 124.95682 * 23 22 21 45 45 H 0.96707 * 114.00067 * 59.99299 * 24 23 22 46 46 H 1.48498 * 110.00039 * 180.02562 * 25 23 22 47 47 H 1.48502 * 109.99843 * 301.31815 * 25 23 22 48 48 H 1.07995 * 122.54209 * 179.97438 * 26 22 21 49 49 H 1.08993 * 113.61636 * 156.31970 * 27 9 8 50 50 H 1.09008 * 113.61006 * 25.42212 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5038 8 7 2.0682 -2.6658 2.4164 9 6 1.6741 -4.0670 2.5829 10 1 1.4211 -4.5504 1.6394 11 6 2.6477 -4.8816 3.4508 12 6 1.8065 -4.4478 4.6629 13 1 2.1351 -3.5091 5.1089 14 6 1.6030 -5.5575 5.6964 15 7 0.8647 -5.0258 6.8447 16 16 0.1784 -6.0617 7.9394 17 8 -0.4255 -5.2492 8.9366 18 8 -0.5399 -7.0266 7.1830 19 6 1.4920 -6.9282 8.7320 20 6 1.9717 -8.0835 8.2690 21 16 3.2709 -8.6439 9.3139 22 6 3.0779 -7.2407 10.3565 23 6 3.8925 -6.9580 11.5924 24 8 3.0447 -7.0005 12.7419 25 14 5.2316 -8.2423 11.7606 26 6 2.1006 -6.4644 9.8856 27 6 0.6280 -4.2876 3.6882 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7488 -1.2494 35 1 1.6765 -0.2073 -2.1393 36 1 3.1299 -0.7209 -1.2496 37 1 2.6284 -2.2371 3.0823 38 1 3.6626 -4.4843 3.4590 39 1 2.6145 -5.9539 3.2576 40 1 1.0371 -6.3734 5.2468 41 1 2.5730 -5.9276 6.0280 42 1 0.7778 -4.0671 6.9637 43 1 1.6179 -8.5955 7.3863 44 1 4.3451 -5.9698 11.5111 45 1 2.6075 -7.8525 12.8770 46 1 6.0418 -7.9751 12.9761 47 1 4.6288 -9.5971 11.8404 48 1 1.8061 -5.5442 10.3680 49 1 0.0414 -5.1971 3.5589 50 1 0.0123 -3.4104 3.8879 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_12628560_15065232.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:51 Heat of formation + Delta-G solvation = -127.332971 kcal Electronic energy + Delta-G solvation = -33801.875877 eV Core-core repulsion = 29050.617264 eV Total energy + Delta-G solvation = -4751.258613 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.120 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.92586 -40.45996 -39.50146 -38.39997 -37.99399 -37.67151 -37.01067 -36.06107 -35.20561 -33.68231 -31.84182 -28.37712 -28.36965 -28.29299 -27.19209 -26.61902 -24.90672 -24.42512 -23.09192 -21.47949 -21.16303 -20.56171 -19.88741 -19.32834 -19.14267 -18.46955 -17.96145 -17.70646 -17.57376 -17.20545 -17.14361 -16.55775 -16.40741 -15.91653 -15.77734 -15.64358 -15.43884 -15.33750 -15.07318 -14.92461 -14.49330 -14.23590 -14.15210 -13.87106 -13.83790 -13.59531 -13.46144 -13.34768 -13.31263 -13.19780 -13.19036 -12.97385 -12.92355 -12.91500 -12.87171 -12.52473 -12.47305 -12.33647 -12.32088 -11.84040 -11.60064 -11.45593 -11.39295 -11.33152 -11.11459 -10.82079 -10.41486 -10.21466 -10.12464 -9.80527 -5.09942 -0.75515 -0.45824 0.36851 0.61135 0.97595 1.14879 1.19570 1.49971 1.73738 1.85837 2.09942 2.70399 3.13193 3.21209 3.32729 3.51770 3.57052 3.64201 3.73573 3.78453 3.83670 3.90137 3.93026 3.93747 4.23342 4.30643 4.44982 4.47041 4.53212 4.60402 4.62336 4.65275 4.67245 4.75736 4.81290 4.84315 4.86443 4.87060 4.91683 4.92324 4.94212 5.06016 5.10028 5.13995 5.19658 5.23754 5.26286 5.33391 5.52916 5.66180 6.07177 6.34120 6.40521 7.35061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.644 3.356 7 O -0.595 6.595 8 N -0.681 5.681 9 C 0.125 3.875 10 H 0.089 0.911 11 C -0.121 4.121 12 C -0.107 4.107 13 H 0.112 0.888 14 C 0.116 3.884 15 N -1.103 6.103 16 S 2.726 3.274 17 O -0.993 6.993 18 O -0.982 6.982 19 C -0.692 4.692 20 C -0.085 4.085 21 S 0.189 5.811 22 C -0.233 4.233 23 C -0.044 4.044 24 O -0.543 6.543 25 Si 0.727 3.273 26 C -0.056 4.056 27 C -0.154 4.154 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.418 0.582 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.428 0.572 43 H 0.207 0.793 44 H 0.140 0.860 45 H 0.388 0.612 46 H -0.275 1.275 47 H -0.260 1.260 48 H 0.149 0.851 49 H 0.098 0.902 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.313 0.011 -2.565 8.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.397 3.603 7 O -0.486 6.486 8 N -0.341 5.341 9 C 0.020 3.980 10 H 0.107 0.893 11 C -0.159 4.159 12 C -0.127 4.127 13 H 0.130 0.870 14 C -0.009 4.009 15 N -0.867 5.867 16 S 2.815 3.185 17 O -0.983 6.983 18 O -0.972 6.972 19 C -0.793 4.793 20 C -0.224 4.224 21 S 0.453 5.547 22 C -0.351 4.351 23 C -0.155 4.155 24 O -0.351 6.351 25 Si 0.628 3.372 26 C -0.085 4.085 27 C -0.193 4.193 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.255 0.745 38 H 0.112 0.888 39 H 0.136 0.864 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.265 0.735 43 H 0.224 0.776 44 H 0.157 0.843 45 H 0.237 0.763 46 H -0.200 1.200 47 H -0.186 1.186 48 H 0.167 0.833 49 H 0.117 0.883 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.612 -1.779 -2.317 9.094 hybrid contribution -1.493 1.404 1.107 2.329 sum 7.119 -0.375 -1.210 7.231 Atomic orbital electron populations 1.22474 0.94191 1.03640 1.03448 1.22340 0.94340 0.92604 0.81569 1.21889 1.02515 0.90856 1.04203 1.22472 1.01699 1.02228 0.97298 1.86305 1.71544 1.23283 1.47232 1.18369 0.78625 0.80774 0.82491 1.90912 1.42191 1.70931 1.44521 1.44360 1.54720 1.12043 1.22949 1.21915 0.97592 0.79138 0.99339 0.89262 1.23341 0.98555 1.01700 0.92348 1.22801 0.96647 0.99497 0.93720 0.87005 1.21622 0.97145 0.96979 0.85178 1.55212 1.72863 1.20634 1.37948 1.00737 0.72913 0.72620 0.72235 1.93563 1.75267 1.69090 1.60384 1.93566 1.69478 1.62834 1.71316 1.29808 1.26081 1.11469 1.11905 1.26267 0.96889 0.96190 1.03071 1.84365 1.31389 1.21579 1.17405 1.25091 1.05281 1.00470 1.04251 1.24677 0.97715 1.12145 0.80981 1.86619 1.63391 1.40003 1.45113 0.94495 0.79106 0.75312 0.88258 1.19660 0.94355 1.01070 0.93370 1.23625 0.97024 1.02921 0.95715 0.92032 0.89535 0.91842 0.91058 0.88401 0.91220 0.91788 0.89563 0.91803 0.74524 0.88815 0.86358 0.89689 0.88869 0.73532 0.77617 0.84288 0.76277 1.20013 1.18594 0.83305 0.88340 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.57 8.37 71.98 0.60 0.03 16 2 C 0.13 0.31 1.13 -10.79 -0.01 0.30 16 3 C -0.14 0.36 8.85 71.98 0.64 0.99 16 4 C -0.18 -0.48 8.37 71.98 0.60 0.12 16 5 O -0.37 -1.66 9.94 -55.46 -0.55 -2.21 16 6 C 0.64 3.57 8.06 129.79 1.05 4.61 16 7 O -0.59 -6.80 11.48 19.79 0.23 -6.58 16 8 N -0.68 1.27 5.27 -567.63 -2.99 -1.72 16 9 C 0.12 -0.48 4.32 45.51 0.20 -0.28 16 10 H 0.09 0.05 7.46 -2.39 -0.02 0.04 16 11 C -0.12 1.30 7.39 31.12 0.23 1.53 16 12 C -0.11 1.09 3.66 -10.27 -0.04 1.05 16 13 H 0.11 -1.37 8.14 -2.39 -0.02 -1.39 16 14 C 0.12 -1.12 6.05 86.38 0.52 -0.60 16 15 N -1.10 6.70 6.00 -187.50 -1.12 5.57 16 16 S 2.73 3.56 5.80 -56.49 -0.33 3.23 16 17 O -0.99 -9.13 17.63 -128.00 -2.26 -11.39 16 18 O -0.98 -6.42 17.10 -128.00 -2.19 -8.61 16 19 C -0.69 0.78 5.86 21.22 0.12 0.90 16 20 C -0.09 0.38 10.70 66.72 0.71 1.10 16 21 S 0.19 -0.96 20.60 -56.49 -1.16 -2.13 16 22 C -0.23 0.47 5.70 24.59 0.14 0.61 16 23 C -0.04 0.11 2.96 71.24 0.21 0.32 16 24 O -0.54 -0.87 12.88 -148.98 -1.92 -2.79 16 25 Si 0.73 -2.93 30.98 68.60 2.13 -0.81 16 26 C -0.06 -0.01 9.59 21.22 0.20 0.19 16 27 C -0.15 0.74 7.44 31.12 0.23 0.97 16 28 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.06 0.55 5.88 -2.39 -0.01 0.53 16 31 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 33 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 35 H 0.09 -0.05 8.14 -2.38 -0.02 -0.07 16 36 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.42 -2.85 8.81 -92.70 -0.82 -3.67 16 38 H 0.09 -1.17 8.14 -2.39 -0.02 -1.19 16 39 H 0.12 -1.54 8.10 -2.38 -0.02 -1.56 16 40 H 0.08 -0.77 7.49 -2.39 -0.02 -0.79 16 41 H 0.09 -1.29 8.14 -2.39 -0.02 -1.31 16 42 H 0.43 -3.63 8.65 -96.74 -0.84 -4.47 16 43 H 0.21 -1.91 8.00 -2.91 -0.02 -1.93 16 44 H 0.14 -0.69 7.96 -2.39 -0.02 -0.71 16 45 H 0.39 -1.48 8.70 -74.05 -0.64 -2.13 16 46 H -0.27 -0.77 7.11 99.48 0.71 -0.07 16 47 H -0.26 0.18 7.11 99.48 0.71 0.88 16 48 H 0.15 0.18 7.96 -2.91 -0.02 0.16 16 49 H 0.10 -0.44 7.92 -2.39 -0.02 -0.46 16 50 H 0.06 -0.11 8.14 -2.38 -0.02 -0.13 16 Total: 0.00 -28.13 432.72 -6.02 -34.15 By element: Atomic # 1 Polarization: -17.32 SS G_CDS: -1.27 Total: -18.59 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 5.41 Total: 11.85 kcal Atomic # 7 Polarization: 7.97 SS G_CDS: -4.12 Total: 3.85 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -6.69 Total: -31.56 kcal Atomic # 14 Polarization: -2.93 SS G_CDS: 2.13 Total: -0.81 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.49 Total: 1.11 kcal Total: -28.13 -6.02 -34.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_12628560_15065232.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.181 kcal (2) G-P(sol) polarization free energy of solvation -28.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds