Wall clock time and date at job start Tue Mar 9 2021 12:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86297 * 109.47327 * 2 1 4 4 C 1.50704 * 109.46870 * 239.99913 * 2 1 3 5 5 C 1.33386 * 125.20766 * 300.33571 * 4 2 1 6 6 C 1.38419 * 114.92228 * 180.20787 * 5 4 2 7 7 S 1.76204 * 122.53825 * 179.76323 * 6 5 4 8 8 O 1.42102 * 106.40094 * 156.19761 * 7 6 5 9 9 O 1.42099 * 106.40305 * 23.27527 * 7 6 5 10 10 N 1.65601 * 107.21621 * 269.73670 * 7 6 5 11 11 C 1.46493 * 120.00102 * 64.99896 * 10 7 6 12 12 C 1.53003 * 109.47111 * 165.00117 * 11 10 7 13 13 H 1.08996 * 112.85140 * 43.80189 * 12 11 10 14 14 C 1.53781 * 113.61480 * 175.00222 * 12 11 10 15 15 C 1.53786 * 87.17350 * 139.93948 * 14 12 11 16 16 H 1.09000 * 113.61138 * 220.06261 * 15 14 12 17 17 O 1.42894 * 113.61403 * 89.15805 * 15 14 12 18 18 C 1.53782 * 113.61259 * 272.50057 * 12 11 10 19 19 C 1.33395 * 114.92212 * 359.49379 * 6 5 4 20 20 S 1.75885 * 109.59063 * 0.27029 * 19 6 5 21 21 H 0.96698 * 113.99882 * 59.99763 * 1 2 3 22 22 H 1.08995 * 109.47484 * 120.00367 * 2 1 3 23 23 H 1.48498 * 109.99873 * 60.00170 * 3 2 1 24 24 H 1.48506 * 110.00135 * 181.32085 * 3 2 1 25 25 H 1.08002 * 122.53654 * 359.97273 * 5 4 2 26 26 H 0.97003 * 120.00039 * 245.00495 * 10 7 6 27 27 H 1.08994 * 109.47006 * 45.00281 * 11 10 7 28 28 H 1.09002 * 109.47617 * 284.99736 * 11 10 7 29 29 H 1.09002 * 113.61445 * 254.52948 * 14 12 11 30 30 H 1.09002 * 113.61408 * 25.34678 * 14 12 11 31 31 H 0.96703 * 113.99734 * 180.02562 * 17 15 14 32 32 H 1.08997 * 113.61668 * 334.56352 * 18 12 11 33 33 H 1.08998 * 113.61674 * 105.38861 * 18 12 11 34 34 H 1.08000 * 125.20181 * 180.29011 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.6686 -1.9793 -1.5470 6 6 2.2440 -2.4172 -2.7273 7 16 2.0334 -4.0586 -3.3324 8 8 2.2480 -3.9995 -4.7359 9 8 0.8345 -4.5505 -2.7495 10 7 3.2657 -4.9726 -2.7091 11 6 3.3512 -5.1992 -1.2643 12 6 4.3217 -6.3485 -0.9849 13 1 5.2333 -6.2867 -1.5791 14 6 4.5774 -6.5887 0.5124 15 6 4.5348 -8.0939 0.2004 16 1 4.0151 -8.6821 0.9568 17 8 5.8064 -8.6414 -0.1533 18 6 3.6583 -7.7356 -1.0137 19 6 2.9652 -1.5008 -3.3749 20 16 2.9473 0.0091 -2.4729 21 1 -0.3933 0.4417 -0.7650 22 1 1.7924 -0.5139 0.8899 23 1 1.5616 2.4678 1.2085 24 1 3.5347 1.7702 -0.0322 25 1 1.0567 -2.6179 -0.9271 26 1 3.9309 -5.3579 -3.3007 27 1 2.3647 -5.4545 -0.8776 28 1 3.7101 -4.2936 -0.7751 29 1 5.5534 -6.2402 0.8501 30 1 3.7627 -6.2525 1.1539 31 1 5.7859 -9.5878 -0.3511 32 1 2.5919 -7.7144 -0.7895 33 1 3.8913 -8.3126 -1.9086 34 1 3.4809 -1.6613 -4.3101 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_12857624_15065232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:41 Heat of formation + Delta-G solvation = -88.001369 kcal Electronic energy + Delta-G solvation = -21041.693034 eV Core-core repulsion = 17582.162306 eV Total energy + Delta-G solvation = -3459.530729 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.047 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.61732 -39.53892 -38.22781 -37.58903 -36.86937 -36.81839 -34.90010 -31.86782 -28.41021 -27.27523 -26.80096 -24.97554 -23.66336 -21.45263 -20.94300 -20.01485 -19.25847 -18.63687 -18.08860 -17.89145 -17.68110 -17.07476 -16.53075 -16.35595 -16.11253 -15.65494 -15.39893 -15.03722 -14.81636 -14.32096 -14.17095 -14.04889 -13.94613 -13.68455 -13.34473 -13.15904 -13.08720 -12.96256 -12.92149 -12.53430 -12.24727 -12.02353 -12.00565 -11.65103 -11.33824 -10.85905 -10.77552 -10.51287 -10.21763 -9.91431 -5.28192 -0.75488 -0.50995 0.26920 0.53387 0.94460 1.10612 1.45578 1.77442 2.04450 2.72074 2.99100 3.17299 3.31833 3.41946 3.49545 3.60155 3.62693 3.78938 3.82906 4.11641 4.16751 4.24824 4.29437 4.45513 4.53138 4.60224 4.62085 4.74570 4.79522 4.85319 4.96069 5.02454 5.09697 5.29003 5.84132 6.37125 6.59671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.026 4.026 3 Si 0.654 3.346 4 C -0.229 4.229 5 C -0.045 4.045 6 C -0.688 4.688 7 S 2.710 3.290 8 O -0.956 6.956 9 O -0.948 6.948 10 N -1.113 6.113 11 C 0.124 3.876 12 C -0.110 4.110 13 H 0.102 0.898 14 C -0.127 4.127 15 C 0.076 3.924 16 H 0.071 0.929 17 O -0.552 6.552 18 C -0.169 4.169 19 C -0.082 4.082 20 S 0.157 5.843 21 H 0.382 0.618 22 H 0.126 0.874 23 H -0.231 1.231 24 H -0.237 1.237 25 H 0.157 0.843 26 H 0.420 0.580 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.383 0.617 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.152 1.102 1.051 2.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.140 4.140 3 Si 0.553 3.447 4 C -0.347 4.347 5 C -0.073 4.073 6 C -0.787 4.787 7 S 2.796 3.204 8 O -0.946 6.946 9 O -0.938 6.938 10 N -0.874 5.874 11 C -0.002 4.002 12 C -0.130 4.130 13 H 0.120 0.880 14 C -0.165 4.165 15 C 0.017 3.983 16 H 0.089 0.911 17 O -0.358 6.358 18 C -0.207 4.207 19 C -0.221 4.221 20 S 0.421 5.579 21 H 0.230 0.770 22 H 0.143 0.857 23 H -0.153 1.153 24 H -0.161 1.161 25 H 0.175 0.825 26 H 0.255 0.745 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.231 0.769 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.746 3.289 1.521 4.547 hybrid contribution -0.052 -2.074 0.257 2.090 sum 2.695 1.215 1.778 3.450 Atomic orbital electron populations 1.86541 1.16364 1.81678 1.49210 1.24445 0.85411 1.09154 0.94974 0.94995 0.82068 0.77615 0.89983 1.25084 1.07750 0.98993 1.02871 1.19619 0.98077 0.95208 0.94436 1.30063 1.14143 1.26082 1.08446 1.01587 0.73141 0.72780 0.72887 1.93616 1.85584 1.86858 1.28548 1.93606 1.43231 1.78137 1.78856 1.55496 1.48455 1.67633 1.15853 1.21415 1.00849 0.98802 0.79171 1.22693 0.98855 0.93776 0.97659 0.87991 1.23063 1.03402 0.94251 0.95829 1.22716 0.84555 0.95098 0.95932 0.91143 1.86453 1.29546 1.28776 1.91046 1.23799 1.00145 0.96932 0.99779 1.25915 0.98084 0.95959 1.02135 1.84394 1.46791 1.13062 1.13638 0.77010 0.85707 1.15349 1.16136 0.82521 0.74466 0.89805 0.91424 0.90120 0.88340 0.76890 0.88810 0.90608 0.79685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.17 12.86 -35.23 -0.45 -0.28 16 2 C -0.03 0.03 2.96 36.01 0.11 0.13 16 3 Si 0.65 -1.10 30.97 -169.99 -5.26 -6.36 16 4 C -0.23 0.10 5.72 -36.00 -0.21 -0.11 16 5 C -0.04 -0.02 9.56 -41.21 -0.39 -0.41 16 6 C -0.69 -0.19 5.86 -41.21 -0.24 -0.43 16 7 S 2.71 3.08 5.80 -107.50 -0.62 2.46 16 8 O -0.96 -3.62 17.64 -57.17 -1.01 -4.63 16 9 O -0.95 -3.93 17.10 -57.17 -0.98 -4.90 16 10 N -1.11 1.66 6.00 -10.62 -0.06 1.60 16 11 C 0.12 -0.24 6.06 -4.04 -0.02 -0.27 16 12 C -0.11 0.20 3.73 -89.80 -0.33 -0.14 16 13 H 0.10 -0.14 8.12 -51.93 -0.42 -0.57 16 14 C -0.13 0.22 7.47 -25.92 -0.19 0.03 16 15 C 0.08 -0.10 5.29 -25.82 -0.14 -0.24 16 16 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 17 O -0.55 0.09 13.59 -35.23 -0.48 -0.39 16 18 C -0.17 0.28 7.47 -25.82 -0.19 0.09 16 19 C -0.08 0.06 10.70 29.04 0.31 0.37 16 20 S 0.16 -0.21 20.58 -107.50 -2.21 -2.42 16 21 H 0.38 -1.51 8.70 45.56 0.40 -1.12 16 22 H 0.13 -0.16 7.96 -51.93 -0.41 -0.57 16 23 H -0.23 -0.23 7.11 56.52 0.40 0.17 16 24 H -0.24 -0.05 7.11 56.52 0.40 0.35 16 25 H 0.16 0.02 7.96 -52.49 -0.42 -0.39 16 26 H 0.42 -1.23 8.64 -34.47 -0.30 -1.53 16 27 H 0.08 -0.15 7.45 -51.93 -0.39 -0.54 16 28 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 29 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 30 H 0.10 -0.30 8.10 -51.93 -0.42 -0.72 16 31 H 0.38 -1.53 9.12 45.56 0.42 -1.11 16 32 H 0.09 -0.18 7.90 -51.93 -0.41 -0.59 16 33 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 34 H 0.19 -0.48 8.00 -52.49 -0.42 -0.90 16 LS Contribution 318.08 15.07 4.79 4.79 Total: 0.00 -10.01 318.08 -10.86 -20.87 By element: Atomic # 1 Polarization: -6.50 SS G_CDS: -3.26 Total: -9.77 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -1.31 Total: -0.97 kcal Atomic # 7 Polarization: 1.66 SS G_CDS: -0.06 Total: 1.60 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -2.92 Total: -10.20 kcal Atomic # 14 Polarization: -1.10 SS G_CDS: -5.26 Total: -6.36 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -2.84 Total: 0.04 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -10.01 -10.86 -20.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_12857624_15065232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.128 kcal (2) G-P(sol) polarization free energy of solvation -10.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds