Wall clock time and date at job start Tue Mar 9 2021 12:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86297 * 109.47327 * 2 1 4 4 C 1.50704 * 109.46870 * 239.99913 * 2 1 3 5 5 C 1.33386 * 125.20766 * 300.33571 * 4 2 1 6 6 C 1.38419 * 114.92228 * 180.20787 * 5 4 2 7 7 S 1.76204 * 122.53825 * 179.76323 * 6 5 4 8 8 O 1.42102 * 106.40094 * 156.19761 * 7 6 5 9 9 O 1.42099 * 106.40305 * 23.27527 * 7 6 5 10 10 N 1.65601 * 107.21621 * 269.73670 * 7 6 5 11 11 C 1.46493 * 120.00102 * 64.99896 * 10 7 6 12 12 C 1.53003 * 109.47111 * 165.00117 * 11 10 7 13 13 H 1.08996 * 112.85140 * 43.80189 * 12 11 10 14 14 C 1.53781 * 113.61480 * 175.00222 * 12 11 10 15 15 C 1.53786 * 87.17350 * 139.93948 * 14 12 11 16 16 H 1.09000 * 113.61138 * 220.06261 * 15 14 12 17 17 O 1.42894 * 113.61403 * 89.15805 * 15 14 12 18 18 C 1.53782 * 113.61259 * 272.50057 * 12 11 10 19 19 C 1.33395 * 114.92212 * 359.49379 * 6 5 4 20 20 S 1.75885 * 109.59063 * 0.27029 * 19 6 5 21 21 H 0.96698 * 113.99882 * 59.99763 * 1 2 3 22 22 H 1.08995 * 109.47484 * 120.00367 * 2 1 3 23 23 H 1.48498 * 109.99873 * 60.00170 * 3 2 1 24 24 H 1.48506 * 110.00135 * 181.32085 * 3 2 1 25 25 H 1.08002 * 122.53654 * 359.97273 * 5 4 2 26 26 H 0.97003 * 120.00039 * 245.00495 * 10 7 6 27 27 H 1.08994 * 109.47006 * 45.00281 * 11 10 7 28 28 H 1.09002 * 109.47617 * 284.99736 * 11 10 7 29 29 H 1.09002 * 113.61445 * 254.52948 * 14 12 11 30 30 H 1.09002 * 113.61408 * 25.34678 * 14 12 11 31 31 H 0.96703 * 113.99734 * 180.02562 * 17 15 14 32 32 H 1.08997 * 113.61668 * 334.56352 * 18 12 11 33 33 H 1.08998 * 113.61674 * 105.38861 * 18 12 11 34 34 H 1.08000 * 125.20181 * 180.29011 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.6686 -1.9793 -1.5470 6 6 2.2440 -2.4172 -2.7273 7 16 2.0334 -4.0586 -3.3324 8 8 2.2480 -3.9995 -4.7359 9 8 0.8345 -4.5505 -2.7495 10 7 3.2657 -4.9726 -2.7091 11 6 3.3512 -5.1992 -1.2643 12 6 4.3217 -6.3485 -0.9849 13 1 5.2333 -6.2867 -1.5791 14 6 4.5774 -6.5887 0.5124 15 6 4.5348 -8.0939 0.2004 16 1 4.0151 -8.6821 0.9568 17 8 5.8064 -8.6414 -0.1533 18 6 3.6583 -7.7356 -1.0137 19 6 2.9652 -1.5008 -3.3749 20 16 2.9473 0.0091 -2.4729 21 1 -0.3933 0.4417 -0.7650 22 1 1.7924 -0.5139 0.8899 23 1 1.5616 2.4678 1.2085 24 1 3.5347 1.7702 -0.0322 25 1 1.0567 -2.6179 -0.9271 26 1 3.9309 -5.3579 -3.3007 27 1 2.3647 -5.4545 -0.8776 28 1 3.7101 -4.2936 -0.7751 29 1 5.5534 -6.2402 0.8501 30 1 3.7627 -6.2525 1.1539 31 1 5.7859 -9.5878 -0.3511 32 1 2.5919 -7.7144 -0.7895 33 1 3.8913 -8.3126 -1.9086 34 1 3.4809 -1.6613 -4.3101 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_12857624_15065232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:40 Heat of formation + Delta-G solvation = -94.437029 kcal Electronic energy + Delta-G solvation = -21041.972106 eV Core-core repulsion = 17582.162306 eV Total energy + Delta-G solvation = -3459.809800 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.047 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.48464 -39.49262 -38.41830 -37.53021 -37.04516 -36.76156 -34.82033 -31.81688 -28.30699 -27.21730 -26.65684 -24.94941 -23.54001 -21.43443 -20.84357 -20.01442 -19.20653 -18.65292 -18.05542 -17.83826 -17.66035 -17.05387 -16.43585 -16.26939 -16.08043 -15.59848 -15.39063 -14.98542 -14.73661 -14.29185 -14.12839 -13.95675 -13.88745 -13.69350 -13.36432 -13.25757 -13.22330 -12.98011 -12.93608 -12.56273 -12.20967 -11.92741 -11.87402 -11.63504 -11.21174 -10.75410 -10.69585 -10.40301 -10.16131 -9.84361 -5.17006 -0.79910 -0.47859 0.33479 0.58888 0.95725 1.19122 1.53386 1.84340 2.04919 2.65971 3.17830 3.18705 3.41443 3.54788 3.62882 3.67975 3.76829 3.90516 3.97111 4.20452 4.24843 4.38048 4.39588 4.60477 4.63371 4.70676 4.79351 4.87849 4.89633 4.92650 5.04253 5.09113 5.24183 5.44209 5.99459 6.63296 6.85506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.031 4.031 3 Si 0.726 3.274 4 C -0.233 4.233 5 C -0.057 4.057 6 C -0.694 4.694 7 S 2.727 3.273 8 O -0.985 6.985 9 O -0.983 6.983 10 N -1.104 6.104 11 C 0.120 3.880 12 C -0.106 4.106 13 H 0.098 0.902 14 C -0.129 4.129 15 C 0.071 3.929 16 H 0.080 0.920 17 O -0.573 6.573 18 C -0.169 4.169 19 C -0.086 4.086 20 S 0.188 5.812 21 H 0.397 0.603 22 H 0.126 0.874 23 H -0.269 1.269 24 H -0.259 1.259 25 H 0.154 0.846 26 H 0.428 0.572 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.397 0.603 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.536 1.594 1.041 3.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.144 4.144 3 Si 0.628 3.372 4 C -0.351 4.351 5 C -0.086 4.086 6 C -0.795 4.795 7 S 2.815 3.185 8 O -0.975 6.975 9 O -0.973 6.973 10 N -0.867 5.867 11 C -0.005 4.005 12 C -0.126 4.126 13 H 0.116 0.884 14 C -0.167 4.167 15 C 0.012 3.988 16 H 0.098 0.902 17 O -0.381 6.381 18 C -0.207 4.207 19 C -0.226 4.226 20 S 0.451 5.549 21 H 0.247 0.753 22 H 0.143 0.857 23 H -0.195 1.195 24 H -0.184 1.184 25 H 0.171 0.829 26 H 0.265 0.735 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.247 0.753 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.120 3.741 1.477 5.091 hybrid contribution -0.139 -2.196 0.309 2.222 sum 2.981 1.545 1.786 3.804 Atomic orbital electron populations 1.86505 1.16701 1.82113 1.50366 1.24589 0.85281 1.09685 0.94861 0.94142 0.79568 0.75466 0.88045 1.25199 1.07774 0.98901 1.03259 1.19667 0.98571 0.95675 0.94682 1.29822 1.15240 1.25559 1.08865 1.00748 0.72769 0.72954 0.71983 1.93569 1.86020 1.87436 1.30519 1.93560 1.45360 1.79100 1.79245 1.55241 1.47976 1.67230 1.16284 1.21531 1.00911 0.99408 0.78675 1.22643 0.98614 0.93686 0.97691 0.88399 1.23128 1.03455 0.94132 0.95955 1.22815 0.84285 0.95425 0.96242 0.90208 1.86411 1.30332 1.30218 1.91170 1.23804 1.00288 0.96965 0.99622 1.26227 0.97577 0.96095 1.02652 1.84297 1.45809 1.12124 1.12623 0.75310 0.85681 1.19463 1.18433 0.82855 0.73540 0.89885 0.90161 0.90996 0.86954 0.75301 0.88503 0.90927 0.78043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.45 12.86 -148.98 -1.92 -1.47 16 2 C -0.03 0.07 2.96 71.24 0.21 0.28 16 3 Si 0.73 -2.63 30.97 68.60 2.12 -0.51 16 4 C -0.23 0.30 5.72 24.59 0.14 0.44 16 5 C -0.06 -0.05 9.56 21.21 0.20 0.15 16 6 C -0.69 -0.41 5.86 21.22 0.12 -0.29 16 7 S 2.73 8.04 5.80 -56.49 -0.33 7.72 16 8 O -0.99 -8.14 17.64 -128.00 -2.26 -10.40 16 9 O -0.98 -9.23 17.10 -128.00 -2.19 -11.42 16 10 N -1.10 2.98 6.00 -187.50 -1.12 1.85 16 11 C 0.12 -0.47 6.06 86.38 0.52 0.06 16 12 C -0.11 0.38 3.73 -10.27 -0.04 0.34 16 13 H 0.10 -0.26 8.12 -2.39 -0.02 -0.28 16 14 C -0.13 0.45 7.47 31.12 0.23 0.68 16 15 C 0.07 -0.19 5.29 31.18 0.16 -0.03 16 16 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 17 O -0.57 0.08 13.59 -148.98 -2.02 -1.94 16 18 C -0.17 0.54 7.47 31.18 0.23 0.77 16 19 C -0.09 0.18 10.70 66.72 0.71 0.89 16 20 S 0.19 -0.67 20.58 -56.49 -1.16 -1.83 16 21 H 0.40 -3.30 8.70 -74.06 -0.64 -3.95 16 22 H 0.13 -0.33 7.96 -2.39 -0.02 -0.34 16 23 H -0.27 -0.74 7.11 99.48 0.71 -0.04 16 24 H -0.26 0.02 7.11 99.48 0.71 0.72 16 25 H 0.15 0.16 7.96 -2.91 -0.02 0.14 16 26 H 0.43 -2.41 8.64 -96.74 -0.84 -3.25 16 27 H 0.08 -0.28 7.45 -2.39 -0.02 -0.30 16 28 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 29 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.11 -0.75 8.10 -2.39 -0.02 -0.77 16 31 H 0.40 -3.07 9.12 -74.06 -0.68 -3.75 16 32 H 0.10 -0.37 7.90 -2.39 -0.02 -0.39 16 33 H 0.07 -0.19 8.14 -2.39 -0.02 -0.20 16 34 H 0.20 -1.22 8.00 -2.91 -0.02 -1.25 16 Total: 0.00 -22.08 318.08 -7.33 -29.41 By element: Atomic # 1 Polarization: -13.74 SS G_CDS: -0.96 Total: -14.70 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 2.51 Total: 3.30 kcal Atomic # 7 Polarization: 2.98 SS G_CDS: -1.12 Total: 1.85 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -8.39 Total: -25.23 kcal Atomic # 14 Polarization: -2.63 SS G_CDS: 2.12 Total: -0.51 kcal Atomic # 16 Polarization: 7.37 SS G_CDS: -1.49 Total: 5.88 kcal Total: -22.08 -7.33 -29.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_12857624_15065232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.031 kcal (2) G-P(sol) polarization free energy of solvation -22.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds