Wall clock time and date at job start Tue Mar 9 2021 13:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42899 * 113.99888 * 2 1 4 4 C 1.53002 * 109.47515 * 180.02562 * 3 2 1 5 5 H 1.08991 * 112.85065 * 43.79783 * 4 3 2 6 6 C 1.53778 * 113.61768 * 175.00170 * 4 3 2 7 7 C 1.53779 * 87.08166 * 139.97779 * 6 4 3 8 8 H 1.08996 * 113.61528 * 89.20133 * 7 6 4 9 9 N 1.46504 * 113.61283 * 220.01704 * 7 6 4 10 10 S 1.65603 * 120.00136 * 213.46945 * 9 7 6 11 11 O 1.42099 * 106.40023 * 311.46551 * 10 9 7 12 12 O 1.42097 * 106.40180 * 178.54223 * 10 9 7 13 13 C 1.76200 * 107.21581 * 65.00193 * 10 9 7 14 14 C 1.33395 * 122.53893 * 270.25812 * 13 10 9 15 15 S 1.75886 * 109.59043 * 180.24204 * 14 13 10 16 16 C 1.75885 * 90.97065 * 359.73076 * 15 14 13 17 17 C 1.50702 * 125.19995 * 179.97438 * 16 15 14 18 18 O 1.42900 * 109.47305 * 120.02010 * 17 16 15 19 19 Si 1.86301 * 109.47375 * 0.02562 * 17 16 15 20 20 C 1.33388 * 109.59458 * 359.97438 * 16 15 14 21 21 C 1.53774 * 87.17475 * 334.60669 * 7 6 4 22 22 H 1.09007 * 109.47038 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47244 * 299.99787 * 1 2 3 24 24 H 1.08995 * 109.47528 * 60.00347 * 1 2 3 25 25 H 1.09006 * 109.47261 * 59.99823 * 3 2 1 26 26 H 1.09004 * 109.47399 * 300.00222 * 3 2 1 27 27 H 1.09008 * 113.61526 * 25.43053 * 6 4 3 28 28 H 1.08997 * 113.69441 * 254.53983 * 6 4 3 29 29 H 0.97000 * 120.00174 * 33.47419 * 9 7 6 30 30 H 1.07998 * 125.20353 * 359.97188 * 14 13 10 31 31 H 1.09002 * 109.46625 * 240.01886 * 17 16 15 32 32 H 0.96698 * 114.00486 * 179.97438 * 18 17 16 33 33 H 1.48502 * 109.99870 * 298.68281 * 19 17 16 34 34 H 1.48496 * 109.99697 * 60.00255 * 19 17 16 35 35 H 1.08002 * 122.53671 * 179.97438 * 20 16 15 36 36 H 1.08999 * 113.61517 * 139.93477 * 21 7 6 37 37 H 1.09002 * 113.61841 * 270.84164 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8998 0.4288 -0.6961 6 6 4.2602 2.5355 -0.1235 7 6 5.2677 1.9994 0.9072 8 1 6.1075 1.4670 0.4608 9 7 5.6870 2.9989 1.8928 10 16 7.2269 2.9668 2.5012 11 8 7.4752 1.6239 2.8937 12 8 7.3292 4.0687 3.3925 13 6 8.3231 3.3051 1.1638 14 6 8.8312 2.3433 0.3917 15 16 9.8815 3.0571 -0.8252 16 6 9.5555 4.6698 -0.2036 17 6 10.1343 5.9470 -0.7557 18 8 9.0746 6.8010 -1.1914 19 14 11.2464 5.5527 -2.1974 20 6 8.7178 4.5895 0.8313 21 6 4.1470 1.0730 1.4078 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.6884 1.8464 0.8900 26 1 1.6884 1.8464 -0.8900 27 1 3.6736 3.3803 0.2379 28 1 4.6943 2.7117 -1.1076 29 1 5.0626 3.6796 2.1892 30 1 8.6319 1.2874 0.5003 31 1 10.7105 6.4502 0.0208 32 1 9.3743 7.6436 -1.5590 33 1 12.3704 4.6910 -1.7510 34 1 10.4724 4.8664 -3.2629 35 1 8.3777 5.4602 1.3723 36 1 4.4895 0.0689 1.6576 37 1 3.5294 1.5172 2.1885 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_12906264_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:38 Heat of formation + Delta-G solvation = -88.286538 kcal Electronic energy + Delta-G solvation = -22784.362900 eV Core-core repulsion = 19169.282187 eV Total energy + Delta-G solvation = -3615.080714 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.063 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.54240 -39.48218 -38.51195 -38.29168 -37.54576 -37.10102 -34.33891 -32.05372 -29.45250 -27.28992 -26.91212 -26.53407 -24.93825 -23.41624 -21.41780 -20.86713 -20.16152 -19.06102 -18.60822 -18.40196 -17.91812 -17.68434 -17.18881 -16.83132 -16.29697 -16.19306 -15.95593 -15.55707 -15.36753 -14.58327 -14.37202 -14.30976 -14.21918 -14.12978 -13.77473 -13.42547 -13.40196 -13.31576 -13.26318 -13.09080 -12.92783 -12.67650 -12.35764 -12.22809 -11.96500 -11.81555 -11.68104 -11.37136 -10.61275 -10.59247 -10.48304 -10.19868 -9.96321 -5.26092 -0.87489 -0.60398 0.21034 0.48330 0.88696 1.14325 1.53211 1.82702 1.94990 2.58417 2.80989 3.12106 3.36651 3.46644 3.59567 3.68096 3.77095 3.82850 3.87528 3.99797 4.12358 4.38033 4.38616 4.38774 4.48554 4.52852 4.59966 4.62456 4.78455 4.78503 4.83878 4.85453 4.89967 4.95757 5.08418 5.09488 5.49416 5.97563 6.23970 6.80775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.067 3.933 4 C -0.109 4.109 5 H 0.101 0.899 6 C -0.126 4.126 7 C 0.121 3.879 8 H 0.120 0.880 9 N -1.089 6.089 10 S 2.725 3.275 11 O -0.978 6.978 12 O -0.983 6.983 13 C -0.688 4.688 14 C -0.082 4.082 15 S 0.128 5.872 16 C -0.196 4.196 17 C -0.046 4.046 18 O -0.559 6.559 19 Si 0.757 3.243 20 C -0.052 4.052 21 C -0.147 4.147 22 H 0.090 0.910 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.431 0.569 30 H 0.207 0.793 31 H 0.106 0.894 32 H 0.407 0.593 33 H -0.270 1.270 34 H -0.274 1.274 35 H 0.160 0.840 36 H 0.071 0.929 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.731 4.358 -5.589 7.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.009 4.009 4 C -0.128 4.128 5 H 0.119 0.881 6 C -0.165 4.165 7 C 0.013 3.987 8 H 0.138 0.862 9 N -0.851 5.851 10 S 2.813 3.187 11 O -0.967 6.967 12 O -0.974 6.974 13 C -0.788 4.788 14 C -0.221 4.221 15 S 0.391 5.609 16 C -0.314 4.314 17 C -0.158 4.158 18 O -0.369 6.369 19 Si 0.660 3.340 20 C -0.080 4.080 21 C -0.187 4.187 22 H 0.109 0.891 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.268 0.732 30 H 0.224 0.776 31 H 0.124 0.876 32 H 0.259 0.741 33 H -0.196 1.196 34 H -0.200 1.200 35 H 0.178 0.822 36 H 0.090 0.910 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.655 2.237 -6.269 6.689 hybrid contribution -1.324 0.890 1.062 1.917 sum -0.669 3.127 -5.208 6.112 Atomic orbital electron populations 1.22876 0.79922 1.03539 1.00719 1.87852 1.21011 1.29186 1.95579 1.22647 0.92982 0.84294 1.00984 1.22393 0.93085 0.99074 0.98224 0.88109 1.23358 0.96417 0.96894 0.99833 1.22472 0.97461 0.89320 0.89401 0.86200 1.55266 1.29169 1.42499 1.58132 1.00918 0.72671 0.72566 0.72554 1.93584 1.85312 1.37401 1.80447 1.93562 1.86398 1.55112 1.62287 1.29991 1.24109 0.99973 1.24758 1.26239 0.96267 1.04215 0.95330 1.84523 1.45331 0.98899 1.32169 1.24090 1.07153 0.97946 1.02170 1.24198 0.95311 0.88909 1.07355 1.86441 1.32981 1.33545 1.83964 0.93741 0.77079 0.86407 0.76781 1.19705 0.96202 0.96056 0.96045 1.23618 0.97320 1.00462 0.97259 0.89130 0.93367 0.93242 0.92364 0.92280 0.87787 0.89435 0.73156 0.77586 0.87638 0.74052 1.19562 1.20034 0.82231 0.91041 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 11.01 113.37 1.25 1.22 16 2 O -0.42 -1.56 10.70 -148.98 -1.59 -3.16 16 3 C 0.07 -0.09 5.78 71.98 0.42 0.33 16 4 C -0.11 0.29 4.01 -10.21 -0.04 0.25 16 5 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 6 C -0.13 0.71 7.42 31.12 0.23 0.94 16 7 C 0.12 -0.38 4.34 45.51 0.20 -0.18 16 8 H 0.12 -0.61 7.89 -2.39 -0.02 -0.62 16 9 N -1.09 2.16 5.79 -167.20 -0.97 1.19 16 10 S 2.73 12.11 5.74 -56.49 -0.32 11.79 16 11 O -0.98 -9.45 17.41 -128.00 -2.23 -11.68 16 12 O -0.98 -10.37 17.63 -128.00 -2.26 -12.63 16 13 C -0.69 -2.42 5.86 21.22 0.12 -2.29 16 14 C -0.08 -0.12 10.53 66.72 0.70 0.59 16 15 S 0.13 0.36 20.58 -56.49 -1.16 -0.80 16 16 C -0.20 -0.72 5.76 24.59 0.14 -0.58 16 17 C -0.05 0.08 2.95 71.24 0.21 0.30 16 18 O -0.56 1.32 12.83 -148.98 -1.91 -0.59 16 19 Si 0.76 -2.73 30.97 68.60 2.12 -0.61 16 20 C -0.05 -0.23 9.56 21.22 0.20 -0.03 16 21 C -0.15 0.21 7.45 31.18 0.23 0.44 16 22 H 0.09 -0.21 8.14 -2.38 -0.02 -0.23 16 23 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 24 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 25 H 0.06 -0.17 7.85 -2.38 -0.02 -0.19 16 26 H 0.06 -0.18 8.14 -2.38 -0.02 -0.20 16 27 H 0.10 -0.80 8.10 -2.38 -0.02 -0.82 16 28 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H 0.43 -2.47 8.93 -96.75 -0.86 -3.33 16 30 H 0.21 -0.76 8.01 -2.91 -0.02 -0.79 16 31 H 0.11 -0.60 7.96 -2.39 -0.02 -0.62 16 32 H 0.41 -5.31 8.74 -74.06 -0.65 -5.96 16 33 H -0.27 -0.39 7.11 99.48 0.71 0.32 16 34 H -0.27 -0.78 7.11 99.48 0.71 -0.07 16 35 H 0.16 0.58 7.97 -2.91 -0.02 0.55 16 36 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.09 -0.19 7.90 -2.39 -0.02 -0.21 16 Total: 0.00 -23.75 340.89 -5.03 -28.79 By element: Atomic # 1 Polarization: -12.90 SS G_CDS: -0.38 Total: -13.28 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 3.67 Total: 0.97 kcal Atomic # 7 Polarization: 2.16 SS G_CDS: -0.97 Total: 1.19 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -7.99 Total: -28.05 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: 2.12 Total: -0.61 kcal Atomic # 16 Polarization: 12.47 SS G_CDS: -1.49 Total: 10.99 kcal Total: -23.75 -5.03 -28.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_12906264_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.501 kcal (2) G-P(sol) polarization free energy of solvation -23.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds