Wall clock time and date at job start Tue Mar 9 2021 13:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20755 * 119.99826 * 2 1 4 4 C 1.50697 * 120.00149 * 180.02562 * 2 1 3 5 5 H 1.09002 * 109.47120 * 34.99393 * 4 2 1 6 6 C 1.52997 * 109.47466 * 154.99640 * 4 2 1 7 7 C 1.53000 * 109.47060 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47233 * 299.99657 * 7 6 4 9 9 H 1.09002 * 109.47075 * 300.00932 * 8 7 6 10 10 N 1.46492 * 109.47204 * 180.02562 * 8 7 6 11 11 S 1.65603 * 120.00024 * 145.00296 * 10 8 7 12 12 O 1.42096 * 106.40250 * 178.54038 * 11 10 8 13 13 O 1.42104 * 106.40120 * 311.46096 * 11 10 8 14 14 C 1.76198 * 107.21995 * 64.99748 * 11 10 8 15 15 C 1.33392 * 122.54161 * 269.71203 * 14 11 10 16 16 S 1.75887 * 109.59437 * 179.90152 * 15 14 11 17 17 C 1.75885 * 90.96977 * 0.30241 * 16 15 14 18 18 C 1.50701 * 125.20424 * 179.86225 * 17 16 15 19 19 O 1.42901 * 109.47048 * 119.95833 * 18 17 16 20 20 Si 1.86296 * 109.46921 * 359.96142 * 18 17 16 21 21 C 1.33394 * 109.59437 * 359.83050 * 17 16 15 22 22 C 1.52997 * 109.46817 * 60.00194 * 8 7 6 23 23 C 1.52999 * 109.46961 * 274.99990 * 4 2 1 24 24 H 1.08998 * 109.47143 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46765 * 299.99569 * 1 2 3 26 26 H 1.09000 * 109.47570 * 59.99660 * 1 2 3 27 27 H 1.09002 * 109.47153 * 59.99773 * 6 4 2 28 28 H 1.09001 * 109.46832 * 299.99964 * 6 4 2 29 29 H 1.08992 * 109.47399 * 59.99823 * 7 6 4 30 30 H 1.09004 * 109.46724 * 180.02562 * 7 6 4 31 31 H 0.96991 * 120.00401 * 324.99881 * 10 8 7 32 32 H 1.08004 * 125.20297 * 0.02689 * 15 14 11 33 33 H 1.09001 * 109.46850 * 239.96235 * 18 17 16 34 34 H 0.96700 * 113.99738 * 180.02562 * 19 18 17 35 35 H 1.48507 * 110.00063 * 298.67828 * 20 18 17 36 36 H 1.48499 * 110.00379 * 59.99889 * 20 18 17 37 37 H 1.07994 * 122.54056 * 179.97438 * 21 17 16 38 38 H 1.09002 * 109.47153 * 60.00231 * 22 8 7 39 39 H 1.09001 * 109.47289 * 180.02562 * 22 8 7 40 40 H 1.09000 * 109.47486 * 59.99568 * 23 4 2 41 41 H 1.09002 * 109.46716 * 299.99650 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.7131 -2.0404 -0.5903 6 6 3.6477 -1.0929 -0.6102 7 6 4.4124 -2.4180 -0.6113 8 6 4.5586 -2.9237 0.8253 9 1 5.1061 -2.1887 1.4153 10 7 5.2914 -4.1922 0.8243 11 16 6.3264 -4.5516 2.0660 12 8 6.8465 -5.8455 1.7932 13 8 7.1477 -3.4063 2.2480 14 6 5.3544 -4.7040 3.5277 15 6 5.0989 -3.6699 4.3305 16 16 4.1018 -4.2017 5.6783 17 6 4.0953 -5.8491 5.0623 18 6 3.3965 -7.0164 5.7106 19 8 2.4295 -7.5546 4.8065 20 14 2.5427 -6.4439 7.2643 21 6 4.8030 -5.9073 3.9331 22 6 3.1715 -3.1359 1.4349 23 6 2.4066 -1.8102 1.4362 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 4.1951 -0.3575 -0.0205 28 1 3.5435 -0.7330 -1.6338 29 1 3.8649 -3.1530 -1.2012 30 1 5.4008 -2.2667 -1.0452 31 1 5.1703 -4.8217 0.0964 32 1 5.4488 -2.6599 4.1755 33 1 4.1281 -7.7849 5.9601 34 1 1.9400 -8.3106 5.1585 35 1 3.5413 -5.9112 8.2258 36 1 1.5427 -5.3958 6.9378 37 1 4.9361 -6.8237 3.3774 38 1 2.6239 -3.8710 0.8449 39 1 3.2756 -3.4958 2.4585 40 1 1.4184 -1.9614 1.8705 41 1 2.9541 -1.0748 2.0259 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_13287458_15065232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:21 Heat of formation + Delta-G solvation = -113.618055 kcal Electronic energy + Delta-G solvation = -26905.084359 eV Core-core repulsion = 23005.141429 eV Total energy + Delta-G solvation = -3899.942930 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.079 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.17769 -39.51720 -39.18010 -38.18719 -37.63706 -36.86303 -35.38569 -32.23604 -32.00718 -31.56491 -29.62633 -27.28121 -24.91591 -24.31322 -23.86724 -21.60521 -21.21203 -20.50999 -20.06739 -19.04574 -18.59663 -18.48559 -17.79442 -17.64653 -17.03915 -16.42240 -16.27264 -16.04200 -15.84867 -15.61366 -15.33347 -14.95732 -14.60932 -14.47886 -14.34991 -14.23730 -14.11433 -13.94941 -13.71681 -13.37785 -13.20730 -13.15730 -13.11326 -13.04636 -12.90385 -12.65333 -12.52661 -12.36034 -12.28662 -12.23288 -11.88709 -11.69950 -11.55958 -10.68200 -10.60609 -10.47587 -10.17405 -9.89904 -5.39830 -0.77103 -0.52638 0.26112 0.53876 0.92778 0.95210 1.05153 1.42447 1.72774 1.98247 2.70607 2.93048 3.10732 3.33711 3.42018 3.47252 3.62133 3.73096 3.78812 3.83203 3.96601 4.06937 4.08388 4.17485 4.18412 4.25854 4.31036 4.33026 4.41479 4.43455 4.57407 4.60493 4.66649 4.82964 4.85002 4.87164 4.93801 5.01911 5.02988 5.06244 5.11012 5.27635 5.84697 6.39313 6.49018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.359 3.641 3 O -0.454 6.454 4 C -0.140 4.140 5 H 0.101 0.899 6 C -0.108 4.108 7 C -0.120 4.120 8 C 0.146 3.854 9 H 0.094 0.906 10 N -1.109 6.109 11 S 2.708 3.292 12 O -0.951 6.951 13 O -0.951 6.951 14 C -0.683 4.683 15 C -0.084 4.084 16 S 0.138 5.862 17 C -0.183 4.183 18 C -0.035 4.035 19 O -0.542 6.542 20 Si 0.671 3.329 21 C -0.036 4.036 22 C -0.140 4.140 23 C -0.105 4.105 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.421 0.579 32 H 0.186 0.814 33 H 0.087 0.913 34 H 0.386 0.614 35 H -0.238 1.238 36 H -0.235 1.235 37 H 0.159 0.841 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.835 -3.895 1.654 8.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.234 3.766 3 O -0.327 6.327 4 C -0.159 4.159 5 H 0.119 0.881 6 C -0.146 4.146 7 C -0.159 4.159 8 C 0.039 3.961 9 H 0.112 0.888 10 N -0.868 5.868 11 S 2.795 3.205 12 O -0.941 6.941 13 O -0.941 6.941 14 C -0.783 4.783 15 C -0.222 4.222 16 S 0.402 5.598 17 C -0.300 4.300 18 C -0.148 4.148 19 O -0.349 6.349 20 Si 0.570 3.430 21 C -0.065 4.065 22 C -0.179 4.179 23 C -0.143 4.143 24 H 0.101 0.899 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.256 0.744 32 H 0.203 0.797 33 H 0.105 0.895 34 H 0.235 0.765 35 H -0.162 1.162 36 H -0.158 1.158 37 H 0.176 0.824 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.168 -1.439 3.212 7.102 hybrid contribution 0.105 -1.083 -1.389 1.764 sum -6.063 -2.522 1.823 6.815 Atomic orbital electron populations 1.22308 0.94327 1.04753 1.04987 1.24660 0.91986 0.90015 0.69964 1.90432 1.71948 1.35129 1.35212 1.21881 0.97923 0.97171 0.98950 0.88112 1.21443 0.93956 0.97316 1.01906 1.21788 1.01753 0.97349 0.95058 1.20946 0.92209 0.84084 0.98856 0.88777 1.55586 1.63967 1.28351 1.38920 1.01649 0.72798 0.73542 0.72551 1.93614 1.76461 1.40071 1.83928 1.93617 1.63246 1.51412 1.85859 1.30080 1.23794 0.99495 1.24915 1.25933 0.97797 1.02550 0.95952 1.84488 1.47476 1.01856 1.26004 1.23685 1.07310 0.97119 1.01874 1.23987 0.94774 0.95145 1.00934 1.86491 1.53507 1.52024 1.42897 0.94706 0.83751 0.86594 0.77927 1.19568 0.94397 0.97261 0.95271 1.22142 0.95817 0.97820 1.02117 1.21409 1.01413 0.97092 0.94412 0.89932 0.88942 0.88847 0.90405 0.90870 0.90749 0.90293 0.74359 0.79663 0.89491 0.76549 1.16210 1.15845 0.82367 0.90297 0.91028 0.90570 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 0.55 10.33 36.01 0.37 0.93 16 2 C 0.36 -0.10 6.38 -29.04 -0.19 -0.29 16 3 O -0.45 -1.76 16.84 6.00 0.10 -1.65 16 4 C -0.14 0.31 2.37 -91.78 -0.22 0.10 16 5 H 0.10 -0.40 8.14 -51.93 -0.42 -0.82 16 6 C -0.11 0.14 4.74 -26.73 -0.13 0.02 16 7 C -0.12 0.27 5.45 -26.73 -0.15 0.12 16 8 C 0.15 -0.25 2.79 -67.94 -0.19 -0.44 16 9 H 0.09 -0.12 7.50 -51.93 -0.39 -0.51 16 10 N -1.11 1.45 5.47 -4.90 -0.03 1.43 16 11 S 2.71 4.73 5.78 -107.50 -0.62 4.11 16 12 O -0.95 -4.39 17.63 -57.17 -1.01 -5.40 16 13 O -0.95 -4.18 16.97 -57.17 -0.97 -5.15 16 14 C -0.68 -0.81 5.00 -41.21 -0.21 -1.01 16 15 C -0.08 -0.03 9.76 29.04 0.28 0.25 16 16 S 0.14 0.11 20.58 -107.50 -2.21 -2.10 16 17 C -0.18 -0.23 5.76 -36.00 -0.21 -0.44 16 18 C -0.04 0.04 2.95 36.01 0.11 0.14 16 19 O -0.54 0.66 12.83 -35.23 -0.45 0.21 16 20 Si 0.67 -1.34 30.97 -169.99 -5.26 -6.60 16 21 C -0.04 -0.06 9.56 -41.21 -0.39 -0.45 16 22 C -0.14 0.34 5.53 -26.70 -0.15 0.19 16 23 C -0.10 0.27 5.19 -26.70 -0.14 0.13 16 24 H 0.08 -0.38 8.00 -51.93 -0.42 -0.79 16 25 H 0.09 -0.25 8.14 -51.93 -0.42 -0.67 16 26 H 0.09 -0.25 8.14 -51.93 -0.42 -0.68 16 27 H 0.08 0.01 7.87 -51.93 -0.41 -0.40 16 28 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 29 H 0.07 -0.25 8.14 -51.93 -0.42 -0.68 16 30 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 31 H 0.42 -1.32 8.84 -34.47 -0.30 -1.63 16 32 H 0.19 -0.31 8.00 -52.48 -0.42 -0.73 16 33 H 0.09 -0.23 7.96 -51.93 -0.41 -0.64 16 34 H 0.39 -2.40 8.74 45.56 0.40 -2.00 16 35 H -0.24 -0.08 7.11 56.52 0.40 0.32 16 36 H -0.24 -0.17 7.11 56.52 0.40 0.23 16 37 H 0.16 0.17 7.96 -52.49 -0.42 -0.25 16 38 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 39 H 0.07 -0.13 6.19 -51.93 -0.32 -0.45 16 40 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 41 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 LS Contribution 361.42 15.07 5.45 5.45 Total: 0.00 -11.25 361.42 -11.90 -23.14 By element: Atomic # 1 Polarization: -6.98 SS G_CDS: -5.69 Total: -12.68 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.20 Total: -0.75 kcal Atomic # 7 Polarization: 1.45 SS G_CDS: -0.03 Total: 1.43 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -2.33 Total: -11.99 kcal Atomic # 14 Polarization: -1.34 SS G_CDS: -5.26 Total: -6.60 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -2.83 Total: 2.01 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -11.25 -11.90 -23.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13287458_15065232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.475 kcal (2) G-P(sol) polarization free energy of solvation -11.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds