Wall clock time and date at job start Tue Mar 9 2021 13:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20755 * 119.99826 * 2 1 4 4 C 1.50697 * 120.00149 * 180.02562 * 2 1 3 5 5 H 1.09002 * 109.47120 * 34.99393 * 4 2 1 6 6 C 1.52997 * 109.47466 * 154.99640 * 4 2 1 7 7 C 1.53000 * 109.47060 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47233 * 299.99657 * 7 6 4 9 9 H 1.09002 * 109.47075 * 300.00932 * 8 7 6 10 10 N 1.46492 * 109.47204 * 180.02562 * 8 7 6 11 11 S 1.65603 * 120.00024 * 145.00296 * 10 8 7 12 12 O 1.42096 * 106.40250 * 178.54038 * 11 10 8 13 13 O 1.42104 * 106.40120 * 311.46096 * 11 10 8 14 14 C 1.76198 * 107.21995 * 64.99748 * 11 10 8 15 15 C 1.33392 * 122.54161 * 269.71203 * 14 11 10 16 16 S 1.75887 * 109.59437 * 179.90152 * 15 14 11 17 17 C 1.75885 * 90.96977 * 0.30241 * 16 15 14 18 18 C 1.50701 * 125.20424 * 179.86225 * 17 16 15 19 19 O 1.42901 * 109.47048 * 119.95833 * 18 17 16 20 20 Si 1.86296 * 109.46921 * 359.96142 * 18 17 16 21 21 C 1.33394 * 109.59437 * 359.83050 * 17 16 15 22 22 C 1.52997 * 109.46817 * 60.00194 * 8 7 6 23 23 C 1.52999 * 109.46961 * 274.99990 * 4 2 1 24 24 H 1.08998 * 109.47143 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46765 * 299.99569 * 1 2 3 26 26 H 1.09000 * 109.47570 * 59.99660 * 1 2 3 27 27 H 1.09002 * 109.47153 * 59.99773 * 6 4 2 28 28 H 1.09001 * 109.46832 * 299.99964 * 6 4 2 29 29 H 1.08992 * 109.47399 * 59.99823 * 7 6 4 30 30 H 1.09004 * 109.46724 * 180.02562 * 7 6 4 31 31 H 0.96991 * 120.00401 * 324.99881 * 10 8 7 32 32 H 1.08004 * 125.20297 * 0.02689 * 15 14 11 33 33 H 1.09001 * 109.46850 * 239.96235 * 18 17 16 34 34 H 0.96700 * 113.99738 * 180.02562 * 19 18 17 35 35 H 1.48507 * 110.00063 * 298.67828 * 20 18 17 36 36 H 1.48499 * 110.00379 * 59.99889 * 20 18 17 37 37 H 1.07994 * 122.54056 * 179.97438 * 21 17 16 38 38 H 1.09002 * 109.47153 * 60.00231 * 22 8 7 39 39 H 1.09001 * 109.47289 * 180.02562 * 22 8 7 40 40 H 1.09000 * 109.47486 * 59.99568 * 23 4 2 41 41 H 1.09002 * 109.46716 * 299.99650 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.7131 -2.0404 -0.5903 6 6 3.6477 -1.0929 -0.6102 7 6 4.4124 -2.4180 -0.6113 8 6 4.5586 -2.9237 0.8253 9 1 5.1061 -2.1887 1.4153 10 7 5.2914 -4.1922 0.8243 11 16 6.3264 -4.5516 2.0660 12 8 6.8465 -5.8455 1.7932 13 8 7.1477 -3.4063 2.2480 14 6 5.3544 -4.7040 3.5277 15 6 5.0989 -3.6699 4.3305 16 16 4.1018 -4.2017 5.6783 17 6 4.0953 -5.8491 5.0623 18 6 3.3965 -7.0164 5.7106 19 8 2.4295 -7.5546 4.8065 20 14 2.5427 -6.4439 7.2643 21 6 4.8030 -5.9073 3.9331 22 6 3.1715 -3.1359 1.4349 23 6 2.4066 -1.8102 1.4362 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 4.1951 -0.3575 -0.0205 28 1 3.5435 -0.7330 -1.6338 29 1 3.8649 -3.1530 -1.2012 30 1 5.4008 -2.2667 -1.0452 31 1 5.1703 -4.8217 0.0964 32 1 5.4488 -2.6599 4.1755 33 1 4.1281 -7.7849 5.9601 34 1 1.9400 -8.3106 5.1585 35 1 3.5413 -5.9112 8.2258 36 1 1.5427 -5.3958 6.9378 37 1 4.9361 -6.8237 3.3774 38 1 2.6239 -3.8710 0.8449 39 1 3.2756 -3.4958 2.4585 40 1 1.4184 -1.9614 1.8705 41 1 2.9541 -1.0748 2.0259 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_13287458_15065232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:21 Heat of formation + Delta-G solvation = -117.466277 kcal Electronic energy + Delta-G solvation = -26905.251231 eV Core-core repulsion = 23005.141429 eV Total energy + Delta-G solvation = -3900.109801 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.079 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.13204 -39.52885 -39.16329 -38.42518 -37.52979 -37.12369 -35.33884 -32.15056 -31.95152 -31.45038 -29.48258 -27.26859 -24.95044 -24.20696 -23.71987 -21.50829 -21.23511 -20.48366 -20.08938 -19.06571 -18.65777 -18.39311 -17.89490 -17.60159 -17.00638 -16.38704 -16.26396 -16.02233 -15.92952 -15.55422 -15.21763 -14.87718 -14.62238 -14.38572 -14.34439 -14.24097 -14.14077 -13.90411 -13.62030 -13.41882 -13.33258 -13.22504 -13.09431 -13.02354 -12.92016 -12.67932 -12.41243 -12.28925 -12.21004 -12.15600 -11.93867 -11.59216 -11.43191 -10.62312 -10.50927 -10.43164 -10.17789 -9.94813 -5.25507 -0.88293 -0.59625 0.22027 0.49129 0.89916 0.96380 1.15265 1.53607 1.83020 1.93280 2.58005 3.05695 3.11772 3.36639 3.55769 3.62304 3.69373 3.83052 3.89558 3.96895 4.08856 4.10847 4.23847 4.29633 4.34490 4.39882 4.47926 4.50524 4.55506 4.61889 4.65802 4.76327 4.80014 4.82866 4.96833 5.02907 5.06648 5.11013 5.15947 5.21938 5.27858 5.41936 6.00647 6.55384 6.82040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.360 3.640 3 O -0.506 6.506 4 C -0.137 4.137 5 H 0.128 0.872 6 C -0.108 4.108 7 C -0.116 4.116 8 C 0.141 3.859 9 H 0.085 0.915 10 N -1.096 6.096 11 S 2.725 3.275 12 O -0.982 6.982 13 O -0.982 6.982 14 C -0.685 4.685 15 C -0.081 4.081 16 S 0.129 5.871 17 C -0.194 4.194 18 C -0.043 4.043 19 O -0.557 6.557 20 Si 0.754 3.246 21 C -0.048 4.048 22 C -0.136 4.136 23 C -0.103 4.103 24 H 0.108 0.892 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.431 0.569 32 H 0.201 0.799 33 H 0.106 0.894 34 H 0.407 0.593 35 H -0.271 1.271 36 H -0.273 1.273 37 H 0.161 0.839 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.305 -5.263 1.481 9.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.238 3.762 3 O -0.382 6.382 4 C -0.155 4.155 5 H 0.146 0.854 6 C -0.147 4.147 7 C -0.155 4.155 8 C 0.035 3.965 9 H 0.103 0.897 10 N -0.859 5.859 11 S 2.812 3.188 12 O -0.972 6.972 13 O -0.972 6.972 14 C -0.786 4.786 15 C -0.220 4.220 16 S 0.392 5.608 17 C -0.311 4.311 18 C -0.156 4.156 19 O -0.368 6.368 20 Si 0.657 3.343 21 C -0.076 4.076 22 C -0.175 4.175 23 C -0.142 4.142 24 H 0.127 0.873 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.269 0.731 32 H 0.218 0.782 33 H 0.123 0.877 34 H 0.259 0.741 35 H -0.197 1.197 36 H -0.199 1.199 37 H 0.178 0.822 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.644 -2.862 3.015 8.701 hybrid contribution 0.509 -0.626 -1.320 1.547 sum -7.134 -3.489 1.695 8.121 Atomic orbital electron populations 1.22354 0.92358 1.06546 1.05022 1.25241 0.93246 0.89877 0.67815 1.90423 1.73081 1.36901 1.37817 1.21922 0.97324 0.96806 0.99497 0.85363 1.21409 0.94609 0.97238 1.01402 1.21760 1.01697 0.97239 0.94780 1.21055 0.92609 0.83518 0.99344 0.89676 1.55283 1.63483 1.28745 1.38343 1.00870 0.72838 0.72258 0.72793 1.93566 1.77677 1.41372 1.84564 1.93577 1.64894 1.52273 1.86466 1.29932 1.24024 0.99816 1.24797 1.26155 0.97219 1.03150 0.95469 1.84546 1.47672 1.02248 1.26315 1.24058 1.07342 0.97820 1.01879 1.24152 0.95436 0.95081 1.00912 1.86440 1.53705 1.53264 1.43365 0.93765 0.80472 0.84657 0.75440 1.19669 0.94851 0.97428 0.95699 1.22111 0.95224 0.98113 1.02020 1.21406 1.02041 0.96666 0.94056 0.87285 0.88877 0.88712 0.92596 0.91166 0.88738 0.90818 0.73066 0.78200 0.87664 0.74078 1.19741 1.19885 0.82161 0.88837 0.91485 0.89083 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 1.29 10.33 71.24 0.74 2.03 16 2 C 0.36 -0.15 6.38 29.10 0.19 0.03 16 3 O -0.51 -4.72 16.84 -1.43 -0.02 -4.74 16 4 C -0.14 0.70 2.37 -11.54 -0.03 0.68 16 5 H 0.13 -1.33 8.14 -2.39 -0.02 -1.35 16 6 C -0.11 0.24 4.74 30.59 0.14 0.38 16 7 C -0.12 0.56 5.45 30.60 0.17 0.72 16 8 C 0.14 -0.48 2.79 44.99 0.13 -0.35 16 9 H 0.09 -0.12 7.50 -2.39 -0.02 -0.14 16 10 N -1.10 2.84 5.47 -169.40 -0.93 1.91 16 11 S 2.72 11.78 5.78 -56.49 -0.33 11.46 16 12 O -0.98 -9.98 17.63 -128.00 -2.26 -12.24 16 13 O -0.98 -9.89 16.97 -128.00 -2.17 -12.06 16 14 C -0.69 -1.97 5.00 21.22 0.11 -1.87 16 15 C -0.08 -0.10 9.76 66.72 0.65 0.55 16 16 S 0.13 0.27 20.58 -56.49 -1.16 -0.89 16 17 C -0.19 -0.48 5.76 24.59 0.14 -0.34 16 18 C -0.04 0.13 2.95 71.24 0.21 0.34 16 19 O -0.56 2.03 12.83 -148.98 -1.91 0.12 16 20 Si 0.75 -3.22 30.97 68.60 2.12 -1.10 16 21 C -0.05 -0.16 9.56 21.22 0.20 0.04 16 22 C -0.14 0.77 5.53 30.61 0.17 0.94 16 23 C -0.10 0.58 5.19 30.61 0.16 0.74 16 24 H 0.11 -1.26 8.00 -2.39 -0.02 -1.28 16 25 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 27 H 0.06 0.13 7.87 -2.39 -0.02 0.11 16 28 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 30 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.43 -2.92 8.84 -96.76 -0.85 -3.77 16 32 H 0.20 -0.53 8.00 -2.91 -0.02 -0.55 16 33 H 0.11 -0.69 7.96 -2.39 -0.02 -0.71 16 34 H 0.41 -5.73 8.74 -74.06 -0.65 -6.38 16 35 H -0.27 -0.30 7.11 99.48 0.71 0.41 16 36 H -0.27 -0.53 7.11 99.48 0.71 0.18 16 37 H 0.16 0.38 7.96 -2.91 -0.02 0.36 16 38 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H 0.07 -0.28 6.19 -2.39 -0.01 -0.29 16 40 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 41 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 Total: 0.00 -27.17 361.42 -4.08 -31.25 By element: Atomic # 1 Polarization: -17.20 SS G_CDS: -0.40 Total: -17.60 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 2.97 Total: 3.89 kcal Atomic # 7 Polarization: 2.84 SS G_CDS: -0.93 Total: 1.91 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -6.37 Total: -28.92 kcal Atomic # 14 Polarization: -3.22 SS G_CDS: 2.12 Total: -1.10 kcal Atomic # 16 Polarization: 12.05 SS G_CDS: -1.49 Total: 10.56 kcal Total: -27.17 -4.08 -31.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13287458_15065232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.214 kcal (2) G-P(sol) polarization free energy of solvation -27.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds