Wall clock time and date at job start Tue Mar 9 2021 13:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50702 * 109.47242 * 120.00115 * 2 1 3 5 5 C 1.33395 * 125.20438 * 64.99551 * 4 2 1 6 6 C 1.38421 * 114.91882 * 179.97438 * 5 4 2 7 7 S 1.76204 * 122.53516 * 180.02562 * 6 5 4 8 8 O 1.42103 * 106.39977 * 203.53591 * 7 6 5 9 9 O 1.42100 * 106.40195 * 336.46050 * 7 6 5 10 10 N 1.65596 * 107.21739 * 89.99887 * 7 6 5 11 11 C 1.46504 * 120.00028 * 65.00026 * 10 7 6 12 12 H 1.08998 * 112.84719 * 13.80122 * 11 10 7 13 13 C 1.53780 * 113.61342 * 145.00065 * 11 10 7 14 14 C 1.53778 * 87.08534 * 89.11486 * 13 11 10 15 15 H 1.08998 * 113.61417 * 270.88559 * 14 13 11 16 16 C 1.50697 * 113.61818 * 140.06037 * 14 13 11 17 17 C 1.38184 * 119.99009 * 300.00594 * 16 14 13 18 18 C 1.38233 * 120.05311 * 179.97438 * 17 16 14 19 19 C 1.38444 * 120.02603 * 0.02562 * 18 17 16 20 20 F 1.35096 * 120.01744 * 179.97438 * 19 18 17 21 21 C 1.38445 * 119.97176 * 0.02562 * 19 18 17 22 22 C 1.38394 * 119.94835 * 359.71847 * 21 19 18 23 23 F 1.35111 * 120.00973 * 180.27464 * 22 21 19 24 24 C 1.53778 * 113.61437 * 242.49583 * 11 10 7 25 25 C 1.33386 * 114.92441 * 359.97438 * 6 5 4 26 26 S 1.75880 * 109.59264 * 359.76374 * 25 6 5 27 27 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 28 28 H 1.09000 * 109.47224 * 239.99764 * 2 1 3 29 29 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 30 30 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 31 31 H 1.07999 * 122.53423 * 0.02562 * 5 4 2 32 32 H 0.96998 * 120.00341 * 244.99836 * 10 7 6 33 33 H 1.09004 * 113.61392 * 203.66328 * 13 11 10 34 34 H 1.08996 * 113.61662 * 334.47935 * 13 11 10 35 35 H 1.08004 * 119.97456 * 359.97438 * 17 16 14 36 36 H 1.07998 * 119.98490 * 180.02562 * 18 17 16 37 37 H 1.08002 * 120.02390 * 180.02562 * 21 19 18 38 38 H 1.08999 * 113.61556 * 25.43340 * 24 11 10 39 39 H 1.09001 * 113.61994 * 156.33456 * 24 11 10 40 40 H 1.08001 * 125.20060 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7533 -2.0052 1.4974 6 6 2.3063 -2.4360 2.6910 7 16 2.1911 -4.1062 3.2406 8 8 2.3442 -4.0753 4.6530 9 8 1.0555 -4.6640 2.5938 10 7 3.5105 -4.9103 2.6448 11 6 4.8560 -4.5438 3.0937 12 1 4.8483 -3.9090 3.9798 13 6 5.8167 -5.7397 3.2010 14 6 6.1792 -5.4800 1.7293 15 1 5.5398 -6.0086 1.0223 16 6 7.6466 -5.6481 1.4302 17 6 8.5787 -4.8634 2.0821 18 6 9.9251 -5.0168 1.8091 19 6 10.3412 -5.9567 0.8816 20 9 11.6570 -6.1062 0.6146 21 6 9.4082 -6.7427 0.2271 22 6 8.0609 -6.5918 0.5051 23 9 7.1497 -7.3620 -0.1289 24 6 5.7602 -4.0193 1.9658 25 6 2.9338 -1.4913 3.3931 26 16 2.8494 0.0389 2.5301 27 1 -0.3934 0.4417 -0.7651 28 1 1.7923 -0.5139 -0.8900 29 1 1.5879 2.4585 -1.2243 30 1 1.5615 2.4679 1.2085 31 1 1.2189 -2.6673 0.8322 32 1 3.3925 -5.6240 1.9986 33 1 6.6447 -5.5742 3.8903 34 1 5.3122 -6.6916 3.3663 35 1 8.2550 -4.1296 2.8055 36 1 10.6526 -4.4033 2.3196 37 1 9.7319 -7.4764 -0.4963 38 1 5.2099 -3.5826 1.1324 39 1 6.5727 -3.3835 2.3173 40 1 3.4222 -1.6436 4.3443 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_13428184_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:16:25 Heat of formation + Delta-G solvation = -97.762716 kcal Electronic energy + Delta-G solvation = -30785.378711 eV Core-core repulsion = 26036.756759 eV Total energy + Delta-G solvation = -4748.621953 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.045 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -50.05868 -50.01896 -41.31397 -39.45395 -39.20662 -38.21112 -37.73187 -36.86317 -34.41102 -32.03050 -31.95537 -31.31372 -27.26389 -26.93980 -26.24352 -24.87349 -24.36503 -23.08708 -21.31160 -20.81793 -20.18488 -19.37148 -19.06147 -18.66124 -18.61245 -18.24530 -17.76302 -17.23614 -17.11978 -17.04291 -16.73644 -16.34257 -16.29693 -15.97976 -15.69664 -15.55058 -15.40880 -15.18931 -14.52295 -14.43335 -14.32658 -14.19452 -14.09274 -13.98016 -13.73584 -13.64934 -13.15773 -13.12056 -13.05627 -12.99723 -12.91255 -12.67236 -12.63926 -12.48117 -12.09795 -12.00296 -11.63722 -11.48964 -10.76702 -10.65474 -10.22670 -10.18851 -9.85233 -9.66824 -5.23729 -0.77917 -0.50109 -0.19836 -0.12613 0.27980 0.54951 0.93512 1.11545 1.40593 1.75477 1.96823 2.18312 2.70316 2.76528 3.08500 3.14448 3.27775 3.34025 3.36338 3.41537 3.51055 3.60391 3.66821 3.76680 3.78990 3.89325 3.96182 4.01261 4.14894 4.26084 4.44274 4.49275 4.57198 4.64464 4.67439 4.73130 4.78309 4.82509 4.83607 4.88975 4.94146 5.05158 5.07512 5.25477 5.63456 5.79225 6.24549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.036 4.036 3 Si 0.646 3.354 4 C -0.182 4.182 5 C -0.042 4.042 6 C -0.684 4.684 7 S 2.711 3.289 8 O -0.951 6.951 9 O -0.949 6.949 10 N -1.096 6.096 11 C 0.124 3.876 12 H 0.110 0.890 13 C -0.132 4.132 14 C -0.075 4.075 15 H 0.106 0.894 16 C -0.114 4.114 17 C -0.061 4.061 18 C -0.159 4.159 19 C 0.127 3.873 20 F -0.130 7.130 21 C -0.190 4.190 22 C 0.134 3.866 23 F -0.128 7.128 24 C -0.147 4.147 25 C -0.088 4.088 26 S 0.168 5.832 27 H 0.384 0.616 28 H 0.089 0.911 29 H -0.237 1.237 30 H -0.235 1.235 31 H 0.156 0.844 32 H 0.421 0.579 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.268 3.523 -1.627 6.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.148 4.148 3 Si 0.545 3.455 4 C -0.300 4.300 5 C -0.071 4.071 6 C -0.783 4.783 7 S 2.797 3.203 8 O -0.940 6.940 9 O -0.940 6.940 10 N -0.855 5.855 11 C 0.016 3.984 12 H 0.128 0.872 13 C -0.171 4.171 14 C -0.093 4.093 15 H 0.124 0.876 16 C -0.116 4.116 17 C -0.079 4.079 18 C -0.178 4.178 19 C 0.108 3.892 20 F -0.109 7.109 21 C -0.210 4.210 22 C 0.114 3.886 23 F -0.107 7.107 24 C -0.187 4.187 25 C -0.228 4.228 26 S 0.432 5.568 27 H 0.233 0.767 28 H 0.107 0.893 29 H -0.160 1.160 30 H -0.158 1.158 31 H 0.173 0.827 32 H 0.257 0.743 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 5.032 5.322 -0.203 7.328 hybrid contribution -1.157 -1.492 -1.791 2.602 sum 3.876 3.830 -1.994 5.802 Atomic orbital electron populations 1.86625 1.17157 1.80047 1.50028 1.24032 0.84745 1.10076 0.95907 0.95401 0.91628 0.75172 0.83328 1.23773 1.08109 0.97176 1.00905 1.19572 0.97506 0.95281 0.94763 1.29975 1.15497 1.25900 1.06962 1.01597 0.72222 0.72762 0.73695 1.93617 1.85788 1.86555 1.28085 1.93625 1.46977 1.76724 1.76639 1.55374 1.19520 1.49852 1.60742 1.21665 0.81277 0.98136 0.97371 0.87193 1.23430 0.99066 0.99193 0.95441 1.21518 0.91153 0.98402 0.98272 0.87622 1.19804 0.96787 0.97138 0.97826 1.20759 0.91040 0.97903 0.98149 1.21251 0.97369 0.99716 0.99485 1.17342 0.77894 0.97000 0.96998 1.91560 1.31844 1.94751 1.92715 1.21092 0.91547 1.03778 1.04538 1.17154 0.85712 0.91804 0.93909 1.91539 1.65753 1.73165 1.80209 1.23659 0.99755 0.95639 0.99607 1.25902 0.98779 0.95870 1.02207 1.84380 1.49667 1.10645 1.12077 0.76714 0.89343 1.15977 1.15838 0.82698 0.74315 0.88091 0.89786 0.83660 0.83774 0.83336 0.89835 0.88184 0.79650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.33 12.86 -35.23 -0.45 -0.78 16 2 C -0.04 0.03 2.95 36.01 0.11 0.14 16 3 Si 0.65 -1.11 30.98 -169.99 -5.27 -6.37 16 4 C -0.18 -0.06 5.73 -36.00 -0.21 -0.26 16 5 C -0.04 -0.03 9.59 -41.21 -0.40 -0.43 16 6 C -0.68 -0.04 5.86 -41.21 -0.24 -0.28 16 7 S 2.71 1.90 5.77 -107.50 -0.62 1.28 16 8 O -0.95 -3.07 17.16 -57.17 -0.98 -4.05 16 9 O -0.95 -3.97 17.63 -57.17 -1.01 -4.98 16 10 N -1.10 2.83 5.73 -4.20 -0.02 2.80 16 11 C 0.12 -0.47 4.51 -67.12 -0.30 -0.77 16 12 H 0.11 -0.52 7.77 -51.93 -0.40 -0.92 16 13 C -0.13 0.49 7.33 -25.92 -0.19 0.30 16 14 C -0.08 0.25 3.72 -90.96 -0.34 -0.09 16 15 H 0.11 -0.30 7.41 -51.93 -0.38 -0.68 16 16 C -0.11 0.23 5.30 -104.55 -0.55 -0.32 16 17 C -0.06 0.20 8.61 -39.60 -0.34 -0.14 16 18 C -0.16 0.34 10.02 -39.51 -0.40 -0.06 16 19 C 0.13 -0.02 7.30 -39.43 -0.29 -0.31 16 20 F -0.13 -0.16 17.27 2.25 0.04 -0.13 16 21 C -0.19 0.05 10.01 -39.45 -0.39 -0.35 16 22 C 0.13 -0.03 7.24 -39.43 -0.29 -0.32 16 23 F -0.13 -0.11 16.36 2.25 0.04 -0.07 16 24 C -0.15 0.68 7.25 -25.92 -0.19 0.49 16 25 C -0.09 0.11 10.70 29.04 0.31 0.42 16 26 S 0.17 -0.19 20.59 -107.50 -2.21 -2.40 16 27 H 0.38 -1.39 8.74 45.56 0.40 -0.99 16 28 H 0.09 -0.27 7.96 -51.93 -0.41 -0.68 16 29 H -0.24 0.05 7.11 56.52 0.40 0.45 16 30 H -0.23 -0.30 7.11 56.52 0.40 0.11 16 31 H 0.16 0.10 7.97 -52.49 -0.42 -0.32 16 32 H 0.42 -1.63 8.78 -34.47 -0.30 -1.93 16 33 H 0.10 -0.48 7.72 -51.93 -0.40 -0.88 16 34 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 35 H 0.15 -0.86 6.66 -52.48 -0.35 -1.21 16 36 H 0.14 -0.54 8.06 -52.49 -0.42 -0.97 16 37 H 0.15 -0.17 8.06 -52.49 -0.42 -0.59 16 38 H 0.08 -0.36 8.14 -51.93 -0.42 -0.78 16 39 H 0.10 -0.61 6.32 -51.93 -0.33 -0.94 16 40 H 0.19 -0.69 8.00 -52.49 -0.42 -1.11 16 LS Contribution 374.43 15.07 5.64 5.64 Total: 0.00 -10.73 374.43 -12.46 -23.19 By element: Atomic # 1 Polarization: -8.22 SS G_CDS: -3.91 Total: -12.13 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -3.70 Total: -1.99 kcal Atomic # 7 Polarization: 2.83 SS G_CDS: -0.02 Total: 2.80 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -2.44 Total: -9.82 kcal Atomic # 9 Polarization: -0.28 SS G_CDS: 0.08 Total: -0.20 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: -5.27 Total: -6.37 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.83 Total: -1.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -10.73 -12.46 -23.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13428184_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.571 kcal (2) G-P(sol) polarization free energy of solvation -10.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds