Wall clock time and date at job start Tue Mar 9 2021 13:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50702 * 109.47242 * 120.00115 * 2 1 3 5 5 C 1.33395 * 125.20438 * 64.99551 * 4 2 1 6 6 C 1.38421 * 114.91882 * 179.97438 * 5 4 2 7 7 S 1.76204 * 122.53516 * 180.02562 * 6 5 4 8 8 O 1.42103 * 106.39977 * 203.53591 * 7 6 5 9 9 O 1.42100 * 106.40195 * 336.46050 * 7 6 5 10 10 N 1.65596 * 107.21739 * 89.99887 * 7 6 5 11 11 C 1.46504 * 120.00028 * 65.00026 * 10 7 6 12 12 H 1.08998 * 112.84719 * 13.80122 * 11 10 7 13 13 C 1.53780 * 113.61342 * 145.00065 * 11 10 7 14 14 C 1.53778 * 87.08534 * 89.11486 * 13 11 10 15 15 H 1.08998 * 113.61417 * 270.88559 * 14 13 11 16 16 C 1.50697 * 113.61818 * 140.06037 * 14 13 11 17 17 C 1.38184 * 119.99009 * 300.00594 * 16 14 13 18 18 C 1.38233 * 120.05311 * 179.97438 * 17 16 14 19 19 C 1.38444 * 120.02603 * 0.02562 * 18 17 16 20 20 F 1.35096 * 120.01744 * 179.97438 * 19 18 17 21 21 C 1.38445 * 119.97176 * 0.02562 * 19 18 17 22 22 C 1.38394 * 119.94835 * 359.71847 * 21 19 18 23 23 F 1.35111 * 120.00973 * 180.27464 * 22 21 19 24 24 C 1.53778 * 113.61437 * 242.49583 * 11 10 7 25 25 C 1.33386 * 114.92441 * 359.97438 * 6 5 4 26 26 S 1.75880 * 109.59264 * 359.76374 * 25 6 5 27 27 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 28 28 H 1.09000 * 109.47224 * 239.99764 * 2 1 3 29 29 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 30 30 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 31 31 H 1.07999 * 122.53423 * 0.02562 * 5 4 2 32 32 H 0.96998 * 120.00341 * 244.99836 * 10 7 6 33 33 H 1.09004 * 113.61392 * 203.66328 * 13 11 10 34 34 H 1.08996 * 113.61662 * 334.47935 * 13 11 10 35 35 H 1.08004 * 119.97456 * 359.97438 * 17 16 14 36 36 H 1.07998 * 119.98490 * 180.02562 * 18 17 16 37 37 H 1.08002 * 120.02390 * 180.02562 * 21 19 18 38 38 H 1.08999 * 113.61556 * 25.43340 * 24 11 10 39 39 H 1.09001 * 113.61994 * 156.33456 * 24 11 10 40 40 H 1.08001 * 125.20060 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7533 -2.0052 1.4974 6 6 2.3063 -2.4360 2.6910 7 16 2.1911 -4.1062 3.2406 8 8 2.3442 -4.0753 4.6530 9 8 1.0555 -4.6640 2.5938 10 7 3.5105 -4.9103 2.6448 11 6 4.8560 -4.5438 3.0937 12 1 4.8483 -3.9090 3.9798 13 6 5.8167 -5.7397 3.2010 14 6 6.1792 -5.4800 1.7293 15 1 5.5398 -6.0086 1.0223 16 6 7.6466 -5.6481 1.4302 17 6 8.5787 -4.8634 2.0821 18 6 9.9251 -5.0168 1.8091 19 6 10.3412 -5.9567 0.8816 20 9 11.6570 -6.1062 0.6146 21 6 9.4082 -6.7427 0.2271 22 6 8.0609 -6.5918 0.5051 23 9 7.1497 -7.3620 -0.1289 24 6 5.7602 -4.0193 1.9658 25 6 2.9338 -1.4913 3.3931 26 16 2.8494 0.0389 2.5301 27 1 -0.3934 0.4417 -0.7651 28 1 1.7923 -0.5139 -0.8900 29 1 1.5879 2.4585 -1.2243 30 1 1.5615 2.4679 1.2085 31 1 1.2189 -2.6673 0.8322 32 1 3.3925 -5.6240 1.9986 33 1 6.6447 -5.5742 3.8903 34 1 5.3122 -6.6916 3.3663 35 1 8.2550 -4.1296 2.8055 36 1 10.6526 -4.4033 2.3196 37 1 9.7319 -7.4764 -0.4963 38 1 5.2099 -3.5826 1.1324 39 1 6.5727 -3.3835 2.3173 40 1 3.4222 -1.6436 4.3443 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_13428184_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:16:24 Heat of formation + Delta-G solvation = -99.180356 kcal Electronic energy + Delta-G solvation = -30785.440185 eV Core-core repulsion = 26036.756759 eV Total energy + Delta-G solvation = -4748.683426 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.045 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.03563 -50.00330 -41.06167 -39.39390 -39.02400 -38.35886 -37.68555 -37.02573 -34.24100 -31.96715 -31.79797 -31.14484 -27.18759 -26.58775 -26.02347 -24.82346 -24.20710 -22.91439 -21.27163 -20.64673 -20.04119 -19.29475 -18.98818 -18.63949 -18.57512 -18.15680 -17.74161 -17.04802 -17.00866 -16.93088 -16.66918 -16.33675 -16.22964 -15.95824 -15.67521 -15.47960 -15.22898 -14.96536 -14.40742 -14.29053 -14.23677 -14.13392 -13.97809 -13.90212 -13.59294 -13.38066 -13.32229 -13.23065 -13.05324 -12.89708 -12.85388 -12.66736 -12.50124 -12.45026 -11.84654 -11.76832 -11.56666 -11.21012 -10.66150 -10.44267 -10.15087 -10.04465 -9.77582 -9.53417 -5.10926 -0.77658 -0.43913 -0.06494 0.02050 0.36897 0.62245 0.97672 1.19691 1.51173 1.84525 2.05193 2.34545 2.69023 2.87829 3.19192 3.34955 3.38839 3.51569 3.56872 3.68621 3.72009 3.74791 3.93980 3.95200 4.00628 4.12625 4.18159 4.23979 4.30256 4.39832 4.66679 4.74064 4.77421 4.85945 4.92175 4.93868 4.96006 4.98643 5.07584 5.10995 5.13654 5.20363 5.31828 5.56203 5.78661 6.02921 6.49429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.048 4.048 3 Si 0.721 3.279 4 C -0.199 4.199 5 C -0.057 4.057 6 C -0.691 4.691 7 S 2.729 3.271 8 O -0.978 6.978 9 O -0.992 6.992 10 N -1.088 6.088 11 C 0.115 3.885 12 H 0.126 0.874 13 C -0.131 4.131 14 C -0.081 4.081 15 H 0.095 0.905 16 C -0.109 4.109 17 C -0.052 4.052 18 C -0.153 4.153 19 C 0.104 3.896 20 F -0.144 7.144 21 C -0.202 4.202 22 C 0.110 3.890 23 F -0.141 7.141 24 C -0.138 4.138 25 C -0.082 4.082 26 S 0.190 5.810 27 H 0.399 0.601 28 H 0.110 0.890 29 H -0.257 1.257 30 H -0.276 1.276 31 H 0.148 0.852 32 H 0.427 0.573 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.182 0.818 36 H 0.164 0.836 37 H 0.145 0.855 38 H 0.082 0.918 39 H 0.124 0.876 40 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.279 5.042 -0.704 8.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.159 4.159 3 Si 0.622 3.378 4 C -0.316 4.316 5 C -0.086 4.086 6 C -0.792 4.792 7 S 2.817 3.183 8 O -0.968 6.968 9 O -0.982 6.982 10 N -0.848 5.848 11 C 0.008 3.992 12 H 0.144 0.856 13 C -0.170 4.170 14 C -0.099 4.099 15 H 0.113 0.887 16 C -0.110 4.110 17 C -0.070 4.070 18 C -0.172 4.172 19 C 0.085 3.915 20 F -0.123 7.123 21 C -0.221 4.221 22 C 0.091 3.909 23 F -0.120 7.120 24 C -0.177 4.177 25 C -0.221 4.221 26 S 0.454 5.546 27 H 0.250 0.750 28 H 0.128 0.872 29 H -0.182 1.182 30 H -0.203 1.203 31 H 0.166 0.834 32 H 0.264 0.736 33 H 0.136 0.864 34 H 0.093 0.907 35 H 0.199 0.801 36 H 0.182 0.818 37 H 0.163 0.837 38 H 0.101 0.899 39 H 0.142 0.858 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 6.043 6.806 0.701 9.129 hybrid contribution -1.475 -1.924 -2.077 3.192 sum 4.568 4.882 -1.376 6.826 Atomic orbital electron populations 1.86576 1.18193 1.80625 1.51344 1.24326 0.84138 1.11004 0.96427 0.94597 0.90382 0.72945 0.79829 1.24043 1.08459 0.97306 1.01798 1.19633 0.98093 0.95653 0.95248 1.29749 1.16715 1.25518 1.07203 1.00717 0.71933 0.72776 0.72839 1.93575 1.86273 1.87099 1.29813 1.93564 1.49601 1.77849 1.77221 1.55105 1.19428 1.49584 1.60728 1.21909 0.80321 0.98574 0.98396 0.85650 1.23488 0.99439 0.98823 0.95233 1.21564 0.90201 0.99671 0.98481 0.88665 1.20031 0.97749 0.96307 0.96891 1.21139 0.90141 0.97758 0.97953 1.21551 0.98404 0.98814 0.98409 1.17601 0.77322 0.98279 0.98334 1.91519 1.32755 1.94994 1.93013 1.21152 0.91918 1.04150 1.04916 1.17410 0.85534 0.92859 0.95133 1.91500 1.66106 1.73720 1.80677 1.23697 0.99999 0.94832 0.99166 1.26266 0.97772 0.95359 1.02718 1.84307 1.48854 1.10207 1.11257 0.74958 0.87246 1.18159 1.20279 0.83443 0.73633 0.86383 0.90677 0.80130 0.81826 0.83675 0.89901 0.85753 0.77139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.85 12.86 -148.98 -1.92 -2.76 16 2 C -0.05 0.10 2.95 71.24 0.21 0.31 16 3 Si 0.72 -2.75 30.98 68.60 2.13 -0.63 16 4 C -0.20 -0.07 5.73 24.59 0.14 0.07 16 5 C -0.06 -0.11 9.59 21.22 0.20 0.09 16 6 C -0.69 0.08 5.86 21.21 0.12 0.21 16 7 S 2.73 5.02 5.77 -56.49 -0.33 4.70 16 8 O -0.98 -6.31 17.16 -128.00 -2.20 -8.50 16 9 O -0.99 -9.87 17.63 -128.00 -2.26 -12.13 16 10 N -1.09 5.74 5.73 -167.20 -0.96 4.78 16 11 C 0.12 -1.06 4.51 45.52 0.21 -0.85 16 12 H 0.13 -1.50 7.77 -2.39 -0.02 -1.52 16 13 C -0.13 1.16 7.33 31.12 0.23 1.39 16 14 C -0.08 0.60 3.72 -11.01 -0.04 0.56 16 15 H 0.10 -0.50 7.41 -2.39 -0.02 -0.52 16 16 C -0.11 0.53 5.30 -19.82 -0.10 0.43 16 17 C -0.05 0.46 8.61 22.26 0.19 0.65 16 18 C -0.15 0.86 10.02 22.32 0.22 1.08 16 19 C 0.10 0.01 7.30 22.37 0.16 0.17 16 20 F -0.14 -0.50 17.27 44.97 0.78 0.27 16 21 C -0.20 -0.18 10.01 22.36 0.22 0.04 16 22 C 0.11 0.04 7.24 22.37 0.16 0.20 16 23 F -0.14 -0.48 16.36 44.97 0.74 0.25 16 24 C -0.14 1.56 7.25 31.12 0.23 1.79 16 25 C -0.08 0.32 10.70 66.72 0.71 1.04 16 26 S 0.19 -0.64 20.59 -56.49 -1.16 -1.80 16 27 H 0.40 -2.79 8.74 -74.06 -0.65 -3.44 16 28 H 0.11 -0.74 7.96 -2.39 -0.02 -0.76 16 29 H -0.26 0.17 7.11 99.48 0.71 0.88 16 30 H -0.28 -0.83 7.11 99.48 0.71 -0.12 16 31 H 0.15 0.39 7.97 -2.91 -0.02 0.37 16 32 H 0.43 -3.06 8.78 -96.75 -0.85 -3.90 16 33 H 0.12 -1.43 7.72 -2.38 -0.02 -1.45 16 34 H 0.07 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H 0.18 -2.92 6.66 -2.91 -0.02 -2.94 16 36 H 0.16 -1.60 8.06 -2.91 -0.02 -1.63 16 37 H 0.15 0.02 8.06 -2.91 -0.02 0.00 16 38 H 0.08 -0.86 8.14 -2.39 -0.02 -0.88 16 39 H 0.12 -2.00 6.32 -2.39 -0.02 -2.01 16 40 H 0.21 -2.06 8.00 -2.91 -0.02 -2.08 16 Total: 0.00 -26.53 374.43 -2.63 -29.16 By element: Atomic # 1 Polarization: -20.20 SS G_CDS: -0.32 Total: -20.52 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 2.87 Total: 7.18 kcal Atomic # 7 Polarization: 5.74 SS G_CDS: -0.96 Total: 4.78 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -6.37 Total: -23.40 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 1.51 Total: 0.53 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: 2.13 Total: -0.63 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.49 Total: 2.89 kcal Total: -26.53 -2.63 -29.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13428184_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.021 kcal (2) G-P(sol) polarization free energy of solvation -26.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds