Wall clock time and date at job start Tue Mar 9 2021 13:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47140 * 2 1 4 4 C 1.53007 * 109.47100 * 240.00076 * 2 1 3 5 5 O 1.45201 * 109.47319 * 120.00103 * 2 1 3 6 6 C 1.34634 * 117.00053 * 59.99446 * 5 2 1 7 7 O 1.21518 * 119.99931 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00355 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00136 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46908 * 180.02562 * 9 8 6 11 11 H 1.08998 * 112.85281 * 316.19881 * 10 9 8 12 12 C 1.53957 * 113.74296 * 87.40539 * 10 9 8 13 13 C 1.53784 * 87.01749 * 139.94298 * 12 10 9 14 14 H 1.08997 * 113.61284 * 89.23220 * 13 12 10 15 15 N 1.46503 * 113.61098 * 220.04466 * 13 12 10 16 16 S 1.65594 * 120.00154 * 244.13550 * 15 13 12 17 17 O 1.42096 * 106.40576 * 311.46388 * 16 15 13 18 18 O 1.42105 * 106.40041 * 178.53921 * 16 15 13 19 19 C 1.76200 * 107.21706 * 65.00712 * 16 15 13 20 20 C 1.33390 * 122.53559 * 269.97571 * 19 16 15 21 21 S 1.75890 * 109.59395 * 180.02562 * 20 19 16 22 22 C 1.75889 * 90.96802 * 359.97438 * 21 20 19 23 23 C 1.50704 * 125.19928 * 179.97438 * 22 21 20 24 24 O 1.42904 * 109.46563 * 120.02715 * 23 22 21 25 25 Si 1.86292 * 109.47267 * 0.02795 * 23 22 21 26 26 C 1.33383 * 109.59330 * 0.02562 * 22 21 20 27 27 C 1.53781 * 113.61056 * 185.00118 * 10 9 8 28 28 H 1.09000 * 109.47184 * 300.00295 * 1 2 3 29 29 H 1.09006 * 109.46979 * 60.00056 * 1 2 3 30 30 H 1.08999 * 109.46875 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47029 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47139 * 299.99846 * 3 2 1 33 33 H 1.09000 * 109.47323 * 59.99790 * 3 2 1 34 34 H 1.08997 * 109.46759 * 299.99614 * 4 2 1 35 35 H 1.08996 * 109.47258 * 59.99920 * 4 2 1 36 36 H 1.09005 * 109.46781 * 180.02562 * 4 2 1 37 37 H 0.96996 * 119.99651 * 0.02562 * 8 6 5 38 38 H 1.09001 * 109.47224 * 60.00558 * 9 8 6 39 39 H 1.09000 * 109.47267 * 300.00067 * 9 8 6 40 40 H 1.08999 * 113.61368 * 25.42045 * 12 10 9 41 41 H 1.09000 * 113.66747 * 254.47241 * 12 10 9 42 42 H 0.97008 * 119.99887 * 64.13868 * 15 13 12 43 43 H 1.07998 * 125.20728 * 0.04348 * 20 19 16 44 44 H 1.09000 * 109.47061 * 240.02644 * 23 22 21 45 45 H 0.96691 * 114.00090 * 299.99884 * 24 23 22 46 46 H 1.48502 * 110.00202 * 58.67671 * 25 23 22 47 47 H 1.48502 * 110.00299 * 179.97438 * 25 23 22 48 48 H 1.08006 * 122.53711 * 179.97438 * 26 22 21 49 49 H 1.09003 * 113.61370 * 105.39204 * 27 10 9 50 50 H 1.08996 * 113.69750 * 334.49506 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0680 -2.6657 2.4166 9 6 1.6748 -4.0671 2.5826 10 6 2.2748 -4.6151 3.8790 11 1 3.3156 -4.3234 4.0201 12 6 1.3953 -4.3745 5.1194 13 6 1.7855 -5.7916 5.5717 14 1 2.6921 -5.8229 6.1759 15 7 0.6782 -6.5429 6.1681 16 16 0.7482 -6.9979 7.7588 17 8 2.0241 -7.5936 7.9500 18 8 -0.4727 -7.6692 8.0382 19 6 0.7376 -5.5238 8.7239 20 6 1.8566 -4.8897 9.0775 21 16 1.4527 -3.4678 10.0309 22 6 -0.2639 -3.8246 9.8907 23 6 -1.3741 -3.0013 10.4911 24 8 -2.2331 -2.5294 9.4511 25 14 -0.6467 -1.5486 11.4028 26 6 -0.4325 -4.9360 9.1726 27 6 2.0224 -6.1176 4.0876 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1393 36 1 3.1301 -0.7216 -1.2490 37 1 2.6277 -2.2369 3.0827 38 1 2.0412 -4.6499 1.7374 39 1 0.5879 -4.1366 2.6279 40 1 0.3355 -4.2660 4.8888 41 1 1.7693 -3.5883 5.7752 42 1 -0.0960 -6.7739 5.6312 43 1 2.8575 -5.2015 8.8180 44 1 -1.9476 -3.6157 11.1852 45 1 -1.7888 -1.9746 8.7955 46 1 0.1638 -0.7203 10.4742 47 1 -1.7315 -0.7282 11.9991 48 1 -1.4083 -5.3462 8.9577 49 1 2.9022 -6.7367 3.9118 50 1 1.1348 -6.4881 3.5748 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_13437774_15065232.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:49 Heat of formation + Delta-G solvation = -124.788845 kcal Electronic energy + Delta-G solvation = -34334.577972 eV Core-core repulsion = 29583.429680 eV Total energy + Delta-G solvation = -4751.148292 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.120 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -41.74871 -40.70787 -39.58481 -38.35149 -38.19743 -37.71677 -36.88184 -35.96361 -34.97447 -33.91417 -31.91825 -28.92435 -28.34946 -28.30782 -27.30561 -26.97899 -24.97264 -24.20113 -22.84597 -21.63713 -21.40774 -20.81523 -20.16066 -19.28493 -19.05892 -18.53106 -18.03188 -17.80689 -17.66285 -17.29199 -17.21690 -16.69653 -16.49436 -16.08116 -15.88299 -15.62490 -15.52542 -15.40839 -15.05902 -14.87806 -14.40907 -14.30913 -14.24704 -13.97681 -13.88899 -13.72304 -13.56916 -13.46415 -13.42728 -13.18773 -13.09138 -13.06284 -12.94341 -12.86559 -12.84711 -12.51258 -12.42543 -12.39336 -12.31242 -12.15327 -11.99233 -11.66660 -11.62939 -11.31192 -10.98780 -10.91903 -10.65502 -10.28655 -10.22155 -9.91293 -5.22315 -0.79723 -0.54272 0.24391 0.50757 0.94572 1.07094 1.17520 1.39278 1.75824 1.88521 1.97430 2.68366 3.02184 3.10574 3.16822 3.26243 3.35560 3.43425 3.51027 3.54495 3.73557 3.75812 3.79889 3.80981 3.95152 4.05221 4.14872 4.30138 4.35388 4.41655 4.51046 4.53889 4.56456 4.56796 4.60873 4.63688 4.72559 4.75951 4.77959 4.82380 4.83968 4.86607 4.91066 5.00875 5.05393 5.14319 5.25449 5.34473 5.43400 5.58254 5.77375 6.16327 6.38484 7.40663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.366 6.366 6 C 0.649 3.351 7 O -0.566 6.566 8 N -0.712 5.712 9 C 0.149 3.851 10 C -0.125 4.125 11 H 0.105 0.895 12 C -0.151 4.151 13 C 0.125 3.875 14 H 0.119 0.881 15 N -1.102 6.102 16 S 2.707 3.293 17 O -0.952 6.952 18 O -0.951 6.951 19 C -0.683 4.683 20 C -0.088 4.088 21 S 0.159 5.841 22 C -0.226 4.226 23 C -0.034 4.034 24 O -0.521 6.521 25 Si 0.652 3.348 26 C -0.042 4.042 27 C -0.129 4.129 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.406 0.594 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.422 0.578 43 H 0.185 0.815 44 H 0.130 0.870 45 H 0.377 0.623 46 H -0.240 1.240 47 H -0.233 1.233 48 H 0.157 0.843 49 H 0.085 0.915 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.861 4.250 0.706 5.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.281 6.281 6 C 0.402 3.598 7 O -0.455 6.455 8 N -0.371 5.371 9 C 0.026 3.974 10 C -0.145 4.145 11 H 0.123 0.877 12 C -0.190 4.190 13 C 0.017 3.983 14 H 0.137 0.863 15 N -0.860 5.860 16 S 2.794 3.206 17 O -0.942 6.942 18 O -0.941 6.941 19 C -0.783 4.783 20 C -0.227 4.227 21 S 0.423 5.577 22 C -0.344 4.344 23 C -0.147 4.147 24 O -0.327 6.327 25 Si 0.551 3.449 26 C -0.071 4.071 27 C -0.169 4.169 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.241 0.759 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.258 0.742 43 H 0.202 0.798 44 H 0.148 0.852 45 H 0.225 0.775 46 H -0.164 1.164 47 H -0.156 1.156 48 H 0.174 0.826 49 H 0.104 0.896 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.118 4.953 1.807 6.689 hybrid contribution -1.112 -0.012 -1.610 1.957 sum 3.005 4.941 0.197 5.786 Atomic orbital electron populations 1.22524 0.93873 1.05041 1.02698 1.22111 0.94417 0.91544 0.81880 1.21882 1.02335 0.92376 1.03325 1.22524 1.01608 1.03458 0.96543 1.86300 1.71512 1.23501 1.46745 1.18117 0.78874 0.80640 0.82192 1.90928 1.40949 1.70482 1.43165 1.44709 1.55912 1.12690 1.23829 1.21342 1.00031 0.78785 0.97205 1.22708 1.00700 0.97064 0.93983 0.87663 1.23707 1.01172 0.97172 0.96980 1.22335 0.89336 0.91439 0.95195 0.86314 1.55522 1.29223 1.72290 1.29002 1.01672 0.73758 0.72929 0.72255 1.93615 1.42373 1.73102 1.85131 1.93623 1.45800 1.71149 1.83535 1.30036 0.98346 1.26688 1.23223 1.25908 1.01976 0.96989 0.97801 1.84406 0.99964 1.23861 1.49438 1.25007 0.97580 1.02877 1.08948 1.24422 0.92288 1.04008 0.93940 1.86654 1.37159 1.69983 1.38922 0.95228 0.84629 0.79297 0.85793 1.19594 0.98165 0.93307 0.95984 1.23301 1.03707 0.95201 0.94696 0.92165 0.90922 0.89429 0.91386 0.89927 0.91431 0.89424 0.90923 0.92110 0.75924 0.90685 0.90800 0.88731 0.90552 0.74236 0.79809 0.85218 0.77497 1.16373 1.15568 0.82580 0.89641 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.21 8.37 37.16 0.31 0.10 16 2 C 0.14 0.15 1.13 -90.62 -0.10 0.04 16 3 C -0.14 0.13 8.85 37.16 0.33 0.46 16 4 C -0.18 -0.21 8.37 37.16 0.31 0.11 16 5 O -0.37 -0.73 9.94 -40.31 -0.40 -1.13 16 6 C 0.65 1.44 8.06 54.05 0.44 1.88 16 7 O -0.57 -2.68 11.88 -19.29 -0.23 -2.91 16 8 N -0.71 0.83 5.56 -65.28 -0.36 0.47 16 9 C 0.15 -0.36 5.52 -4.04 -0.02 -0.38 16 10 C -0.13 0.59 3.75 -89.71 -0.34 0.25 16 11 H 0.11 -0.59 8.14 -51.93 -0.42 -1.01 16 12 C -0.15 0.69 7.45 -25.82 -0.19 0.50 16 13 C 0.12 -0.49 4.42 -67.11 -0.30 -0.79 16 14 H 0.12 -0.55 7.76 -51.93 -0.40 -0.95 16 15 N -1.10 3.12 5.79 -4.20 -0.02 3.10 16 16 S 2.71 0.72 5.77 -107.50 -0.62 0.10 16 17 O -0.95 -2.68 17.15 -57.17 -0.98 -3.66 16 18 O -0.95 -3.53 17.63 -57.17 -1.01 -4.54 16 19 C -0.68 0.41 5.86 -41.21 -0.24 0.17 16 20 C -0.09 0.17 10.70 29.04 0.31 0.48 16 21 S 0.16 -0.33 20.58 -107.50 -2.21 -2.55 16 22 C -0.23 0.20 5.72 -36.00 -0.21 -0.01 16 23 C -0.03 0.04 2.96 36.01 0.11 0.15 16 24 O -0.52 0.01 12.86 -35.23 -0.45 -0.44 16 25 Si 0.65 -1.19 30.97 -169.99 -5.26 -6.46 16 26 C -0.04 0.00 9.56 -41.21 -0.39 -0.39 16 27 C -0.13 0.57 7.42 -25.92 -0.19 0.37 16 28 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.09 0.28 5.88 -51.93 -0.31 -0.02 16 31 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 32 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 33 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 34 H 0.09 0.28 5.88 -51.93 -0.31 -0.02 16 35 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 36 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 37 H 0.41 -1.32 8.58 -40.82 -0.35 -1.67 16 38 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 39 H 0.07 -0.12 7.86 -51.93 -0.41 -0.53 16 40 H 0.09 -0.39 7.91 -51.93 -0.41 -0.80 16 41 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 42 H 0.42 -1.77 8.94 -34.47 -0.31 -2.07 16 43 H 0.18 -0.74 8.00 -52.49 -0.42 -1.16 16 44 H 0.13 -0.24 7.96 -51.93 -0.41 -0.65 16 45 H 0.38 -1.14 8.70 45.56 0.40 -0.74 16 46 H -0.24 0.10 7.11 56.52 0.40 0.50 16 47 H -0.23 -0.25 7.11 56.52 0.40 0.16 16 48 H 0.16 0.02 7.97 -52.48 -0.42 -0.40 16 49 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 50 H 0.10 -0.44 8.10 -51.93 -0.42 -0.87 16 LS Contribution 433.59 15.07 6.53 6.53 Total: 0.00 -11.31 433.59 -12.82 -24.12 By element: Atomic # 1 Polarization: -7.97 SS G_CDS: -7.61 Total: -15.58 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -0.18 Total: 2.94 kcal Atomic # 7 Polarization: 3.95 SS G_CDS: -0.39 Total: 3.56 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -3.07 Total: -12.67 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: -5.26 Total: -6.46 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -2.83 Total: -2.45 kcal Total LS contribution 6.53 Total: 6.53 kcal Total: -11.31 -12.82 -24.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13437774_15065232.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.665 kcal (2) G-P(sol) polarization free energy of solvation -11.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds