Wall clock time and date at job start Tue Mar 9 2021 13:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47140 * 2 1 4 4 C 1.53007 * 109.47100 * 240.00076 * 2 1 3 5 5 O 1.45201 * 109.47319 * 120.00103 * 2 1 3 6 6 C 1.34634 * 117.00053 * 59.99446 * 5 2 1 7 7 O 1.21518 * 119.99931 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00355 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00136 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46908 * 180.02562 * 9 8 6 11 11 H 1.08998 * 112.85281 * 316.19881 * 10 9 8 12 12 C 1.53957 * 113.74296 * 87.40539 * 10 9 8 13 13 C 1.53784 * 87.01749 * 139.94298 * 12 10 9 14 14 H 1.08997 * 113.61284 * 89.23220 * 13 12 10 15 15 N 1.46503 * 113.61098 * 220.04466 * 13 12 10 16 16 S 1.65594 * 120.00154 * 244.13550 * 15 13 12 17 17 O 1.42096 * 106.40576 * 311.46388 * 16 15 13 18 18 O 1.42105 * 106.40041 * 178.53921 * 16 15 13 19 19 C 1.76200 * 107.21706 * 65.00712 * 16 15 13 20 20 C 1.33390 * 122.53559 * 269.97571 * 19 16 15 21 21 S 1.75890 * 109.59395 * 180.02562 * 20 19 16 22 22 C 1.75889 * 90.96802 * 359.97438 * 21 20 19 23 23 C 1.50704 * 125.19928 * 179.97438 * 22 21 20 24 24 O 1.42904 * 109.46563 * 120.02715 * 23 22 21 25 25 Si 1.86292 * 109.47267 * 0.02795 * 23 22 21 26 26 C 1.33383 * 109.59330 * 0.02562 * 22 21 20 27 27 C 1.53781 * 113.61056 * 185.00118 * 10 9 8 28 28 H 1.09000 * 109.47184 * 300.00295 * 1 2 3 29 29 H 1.09006 * 109.46979 * 60.00056 * 1 2 3 30 30 H 1.08999 * 109.46875 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47029 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47139 * 299.99846 * 3 2 1 33 33 H 1.09000 * 109.47323 * 59.99790 * 3 2 1 34 34 H 1.08997 * 109.46759 * 299.99614 * 4 2 1 35 35 H 1.08996 * 109.47258 * 59.99920 * 4 2 1 36 36 H 1.09005 * 109.46781 * 180.02562 * 4 2 1 37 37 H 0.96996 * 119.99651 * 0.02562 * 8 6 5 38 38 H 1.09001 * 109.47224 * 60.00558 * 9 8 6 39 39 H 1.09000 * 109.47267 * 300.00067 * 9 8 6 40 40 H 1.08999 * 113.61368 * 25.42045 * 12 10 9 41 41 H 1.09000 * 113.66747 * 254.47241 * 12 10 9 42 42 H 0.97008 * 119.99887 * 64.13868 * 15 13 12 43 43 H 1.07998 * 125.20728 * 0.04348 * 20 19 16 44 44 H 1.09000 * 109.47061 * 240.02644 * 23 22 21 45 45 H 0.96691 * 114.00090 * 299.99884 * 24 23 22 46 46 H 1.48502 * 110.00202 * 58.67671 * 25 23 22 47 47 H 1.48502 * 110.00299 * 179.97438 * 25 23 22 48 48 H 1.08006 * 122.53711 * 179.97438 * 26 22 21 49 49 H 1.09003 * 113.61370 * 105.39204 * 27 10 9 50 50 H 1.08996 * 113.69750 * 334.49506 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0680 -2.6657 2.4166 9 6 1.6748 -4.0671 2.5826 10 6 2.2748 -4.6151 3.8790 11 1 3.3156 -4.3234 4.0201 12 6 1.3953 -4.3745 5.1194 13 6 1.7855 -5.7916 5.5717 14 1 2.6921 -5.8229 6.1759 15 7 0.6782 -6.5429 6.1681 16 16 0.7482 -6.9979 7.7588 17 8 2.0241 -7.5936 7.9500 18 8 -0.4727 -7.6692 8.0382 19 6 0.7376 -5.5238 8.7239 20 6 1.8566 -4.8897 9.0775 21 16 1.4527 -3.4678 10.0309 22 6 -0.2639 -3.8246 9.8907 23 6 -1.3741 -3.0013 10.4911 24 8 -2.2331 -2.5294 9.4511 25 14 -0.6467 -1.5486 11.4028 26 6 -0.4325 -4.9360 9.1726 27 6 2.0224 -6.1176 4.0876 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1393 36 1 3.1301 -0.7216 -1.2490 37 1 2.6277 -2.2369 3.0827 38 1 2.0412 -4.6499 1.7374 39 1 0.5879 -4.1366 2.6279 40 1 0.3355 -4.2660 4.8888 41 1 1.7693 -3.5883 5.7752 42 1 -0.0960 -6.7739 5.6312 43 1 2.8575 -5.2015 8.8180 44 1 -1.9476 -3.6157 11.1852 45 1 -1.7888 -1.9746 8.7955 46 1 0.1638 -0.7203 10.4742 47 1 -1.7315 -0.7282 11.9991 48 1 -1.4083 -5.3462 8.9577 49 1 2.9022 -6.7367 3.9118 50 1 1.1348 -6.4881 3.5748 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_13437774_15065232.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:48 Heat of formation + Delta-G solvation = -129.880875 kcal Electronic energy + Delta-G solvation = -34334.798779 eV Core-core repulsion = 29583.429680 eV Total energy + Delta-G solvation = -4751.369099 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.120 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.83064 -40.45290 -39.50111 -38.43155 -38.29046 -37.65243 -37.01507 -36.00549 -34.99268 -33.78687 -31.82773 -28.78796 -28.39423 -28.32242 -27.20884 -26.63435 -24.89403 -24.08307 -22.79705 -21.52592 -21.35585 -20.70834 -20.09315 -19.20390 -19.06736 -18.49237 -17.97029 -17.76694 -17.64545 -17.33087 -17.17558 -16.51519 -16.40957 -16.00674 -15.88600 -15.57889 -15.49107 -15.40960 -14.96970 -14.80524 -14.45252 -14.22950 -14.15429 -13.88162 -13.83577 -13.46416 -13.39501 -13.35834 -13.33334 -13.27920 -13.18355 -13.07059 -12.93148 -12.92822 -12.88758 -12.50671 -12.49977 -12.38482 -12.32651 -11.89357 -11.73498 -11.54029 -11.42826 -11.37960 -11.12668 -10.83644 -10.42732 -10.20033 -10.16735 -9.78399 -5.09903 -0.76126 -0.44449 0.36995 0.61234 1.00218 1.16805 1.18276 1.48814 1.74976 1.84487 2.07200 2.69840 3.12157 3.21293 3.32641 3.48996 3.60583 3.61883 3.72127 3.76587 3.77195 3.81417 3.92129 3.92908 4.08025 4.24482 4.36243 4.46869 4.47720 4.54070 4.58540 4.63028 4.66715 4.73836 4.76371 4.82662 4.85234 4.86509 4.88564 4.93157 4.97165 5.04261 5.06638 5.10913 5.14583 5.23524 5.24427 5.34332 5.55492 5.60324 6.02444 6.36804 6.39643 7.33720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.640 3.360 7 O -0.597 6.597 8 N -0.698 5.698 9 C 0.149 3.851 10 C -0.112 4.112 11 H 0.123 0.877 12 C -0.147 4.147 13 C 0.117 3.883 14 H 0.130 0.870 15 N -1.093 6.093 16 S 2.724 3.276 17 O -0.980 6.980 18 O -0.992 6.992 19 C -0.690 4.690 20 C -0.085 4.085 21 S 0.194 5.806 22 C -0.233 4.233 23 C -0.043 4.043 24 O -0.540 6.540 25 Si 0.722 3.278 26 C -0.056 4.056 27 C -0.130 4.130 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.418 0.582 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.428 0.572 43 H 0.207 0.793 44 H 0.132 0.868 45 H 0.388 0.612 46 H -0.253 1.253 47 H -0.276 1.276 48 H 0.146 0.854 49 H 0.089 0.911 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.452 5.435 0.976 7.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.092 3.908 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.393 3.607 7 O -0.488 6.488 8 N -0.358 5.358 9 C 0.027 3.973 10 C -0.132 4.132 11 H 0.141 0.859 12 C -0.186 4.186 13 C 0.010 3.990 14 H 0.148 0.852 15 N -0.854 5.854 16 S 2.813 3.187 17 O -0.970 6.970 18 O -0.983 6.983 19 C -0.791 4.791 20 C -0.224 4.224 21 S 0.458 5.542 22 C -0.351 4.351 23 C -0.155 4.155 24 O -0.348 6.348 25 Si 0.623 3.377 26 C -0.085 4.085 27 C -0.170 4.170 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.255 0.745 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.265 0.735 43 H 0.224 0.776 44 H 0.150 0.850 45 H 0.238 0.762 46 H -0.178 1.178 47 H -0.201 1.201 48 H 0.164 0.836 49 H 0.108 0.892 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.728 6.108 2.077 8.628 hybrid contribution -1.626 -0.321 -1.711 2.382 sum 4.102 5.788 0.366 7.103 Atomic orbital electron populations 1.22477 0.94165 1.03661 1.03463 1.22325 0.94355 0.92578 0.81573 1.21893 1.02500 0.90900 1.04202 1.22476 1.01677 1.02238 0.97359 1.86303 1.71546 1.23409 1.47187 1.18416 0.78847 0.80777 0.82645 1.90914 1.42412 1.71041 1.44455 1.44734 1.55195 1.12875 1.22989 1.21394 0.99674 0.78073 0.98164 1.22650 1.01394 0.96613 0.92512 0.85944 1.23686 1.00955 0.97030 0.96978 1.22576 0.89279 0.91681 0.95465 0.85222 1.55284 1.29952 1.72349 1.27793 1.00838 0.72290 0.72915 0.72696 1.93574 1.43210 1.74319 1.85853 1.93563 1.47315 1.72861 1.84518 1.29764 0.98729 1.26508 1.24105 1.26255 1.02598 0.96661 0.96869 1.84290 0.98286 1.23066 1.48605 1.25079 0.98678 1.02627 1.08725 1.24629 0.92377 1.04589 0.93859 1.86621 1.38158 1.70426 1.39597 0.94440 0.82402 0.77192 0.83696 1.19606 0.98107 0.93931 0.96863 1.23343 1.03968 0.95443 0.94294 0.91958 0.89569 0.91806 0.91101 0.88430 0.91180 0.91806 0.89565 0.91864 0.74537 0.91615 0.91726 0.89279 0.89411 0.73480 0.77590 0.84996 0.76200 1.17769 1.20136 0.83609 0.89230 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.50 8.37 71.98 0.60 0.10 16 2 C 0.13 0.29 1.13 -10.79 -0.01 0.28 16 3 C -0.14 0.38 8.85 71.98 0.64 1.02 16 4 C -0.18 -0.49 8.37 71.98 0.60 0.11 16 5 O -0.37 -1.59 9.94 -55.43 -0.55 -2.14 16 6 C 0.64 3.35 8.06 129.79 1.05 4.40 16 7 O -0.60 -6.66 11.88 19.78 0.24 -6.42 16 8 N -0.70 1.62 5.56 -590.85 -3.28 -1.66 16 9 C 0.15 -0.69 5.52 86.38 0.48 -0.21 16 10 C -0.11 1.16 3.75 -10.21 -0.04 1.12 16 11 H 0.12 -1.62 8.14 -2.39 -0.02 -1.64 16 12 C -0.15 1.49 7.45 31.18 0.23 1.72 16 13 C 0.12 -1.01 4.42 45.52 0.20 -0.81 16 14 H 0.13 -1.38 7.76 -2.39 -0.02 -1.40 16 15 N -1.09 5.91 5.79 -167.19 -0.97 4.94 16 16 S 2.72 3.35 5.77 -56.49 -0.33 3.03 16 17 O -0.98 -5.80 17.15 -128.00 -2.20 -7.99 16 18 O -0.99 -9.03 17.63 -128.00 -2.26 -11.29 16 19 C -0.69 0.85 5.86 21.22 0.12 0.98 16 20 C -0.08 0.42 10.70 66.72 0.71 1.14 16 21 S 0.19 -1.08 20.58 -56.49 -1.16 -2.24 16 22 C -0.23 0.46 5.72 24.59 0.14 0.60 16 23 C -0.04 0.10 2.96 71.24 0.21 0.31 16 24 O -0.54 -0.22 12.86 -148.98 -1.92 -2.14 16 25 Si 0.72 -2.78 30.97 68.60 2.12 -0.66 16 26 C -0.06 -0.02 9.56 21.21 0.20 0.18 16 27 C -0.13 1.22 7.42 31.12 0.23 1.45 16 28 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.09 -0.04 8.14 -2.38 -0.02 -0.06 16 30 H 0.06 0.52 5.88 -2.39 -0.01 0.50 16 31 H 0.07 -0.22 8.14 -2.38 -0.02 -0.24 16 32 H 0.10 -0.56 8.14 -2.38 -0.02 -0.58 16 33 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 35 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 37 H 0.42 -3.05 8.58 -92.71 -0.80 -3.85 16 38 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.06 -0.15 7.86 -2.39 -0.02 -0.17 16 40 H 0.09 -0.76 7.91 -2.39 -0.02 -0.78 16 41 H 0.09 -1.04 8.14 -2.39 -0.02 -1.06 16 42 H 0.43 -3.29 8.94 -96.74 -0.86 -4.15 16 43 H 0.21 -2.07 8.00 -2.91 -0.02 -2.10 16 44 H 0.13 -0.42 7.96 -2.39 -0.02 -0.43 16 45 H 0.39 -2.27 8.70 -74.06 -0.64 -2.91 16 46 H -0.25 0.44 7.11 99.48 0.71 1.15 16 47 H -0.28 -0.88 7.11 99.48 0.71 -0.18 16 48 H 0.15 0.29 7.97 -2.91 -0.02 0.26 16 49 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 50 H 0.10 -0.89 8.10 -2.39 -0.02 -0.90 16 Total: 0.00 -27.19 433.59 -6.20 -33.39 By element: Atomic # 1 Polarization: -17.92 SS G_CDS: -1.27 Total: -19.19 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 5.37 Total: 12.38 kcal Atomic # 7 Polarization: 7.53 SS G_CDS: -4.25 Total: 3.28 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -6.68 Total: -29.97 kcal Atomic # 14 Polarization: -2.78 SS G_CDS: 2.12 Total: -0.66 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.49 Total: 0.79 kcal Total: -27.19 -6.20 -33.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13437774_15065232.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.493 kcal (2) G-P(sol) polarization free energy of solvation -27.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds