Wall clock time and date at job start Tue Mar 9 2021 13:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86305 * 109.47040 * 2 1 4 4 C 1.50697 * 109.47453 * 239.99856 * 2 1 3 5 5 C 1.33387 * 125.20287 * 300.00122 * 4 2 1 6 6 C 1.38427 * 114.91991 * 179.75128 * 5 4 2 7 7 S 1.76200 * 122.53924 * 180.26881 * 6 5 4 8 8 O 1.42096 * 106.40531 * 203.54470 * 7 6 5 9 9 O 1.42106 * 106.40267 * 336.46268 * 7 6 5 10 10 N 1.65598 * 107.21973 * 89.99848 * 7 6 5 11 11 C 1.46504 * 119.99577 * 65.00003 * 10 7 6 12 12 H 1.09002 * 109.47253 * 25.00401 * 11 10 7 13 13 C 1.53001 * 109.47007 * 144.99901 * 11 10 7 14 14 C 1.53003 * 109.47210 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47035 * 299.99901 * 14 13 11 16 16 H 1.09002 * 109.47515 * 300.00314 * 15 14 13 17 17 C 1.50694 * 109.46850 * 179.97438 * 15 14 13 18 18 N 1.30637 * 119.25697 * 334.72862 * 17 15 14 19 19 C 1.33522 * 121.50614 * 179.75716 * 18 17 15 20 20 C 1.36203 * 119.90896 * 0.51917 * 19 18 17 21 21 C 1.41021 * 118.59316 * 359.74346 * 20 19 18 22 22 O 1.21980 * 120.71268 * 180.02562 * 21 20 19 23 23 N 1.34757 * 119.25204 * 155.00509 * 17 15 14 24 24 C 1.53008 * 109.46756 * 59.99992 * 15 14 13 25 25 C 1.52998 * 109.47175 * 299.99552 * 24 15 14 26 26 C 1.33381 * 114.92374 * 0.25034 * 6 5 4 27 27 S 1.75886 * 125.20508 * 120.13576 * 4 2 1 28 28 H 0.96700 * 113.99933 * 60.00346 * 1 2 3 29 29 H 1.09000 * 109.47300 * 119.99878 * 2 1 3 30 30 H 1.48503 * 109.99894 * 59.99903 * 3 2 1 31 31 H 1.48497 * 110.00057 * 181.31989 * 3 2 1 32 32 H 1.08002 * 122.54190 * 0.02679 * 5 4 2 33 33 H 0.96999 * 120.00571 * 245.00337 * 10 7 6 34 34 H 1.08997 * 109.47568 * 300.00215 * 13 11 10 35 35 H 1.09000 * 109.47163 * 59.99922 * 13 11 10 36 36 H 1.08992 * 109.46896 * 59.99977 * 14 13 11 37 37 H 1.09000 * 109.47073 * 179.97438 * 14 13 11 38 38 H 1.08005 * 120.04814 * 180.26269 * 19 18 17 39 39 H 1.07999 * 120.70518 * 179.77129 * 20 19 18 40 40 H 0.96995 * 120.03769 * 359.97438 * 23 17 15 41 41 H 1.09002 * 109.46845 * 59.99912 * 24 15 14 42 42 H 1.09002 * 109.46829 * 179.97438 * 24 15 14 43 43 H 1.08992 * 109.47198 * 300.00358 * 25 24 15 44 44 H 1.08999 * 109.47161 * 179.97438 * 25 24 15 45 45 H 1.07994 * 125.20771 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.6740 -1.9812 -1.5436 6 6 2.2401 -2.4158 -2.7297 7 16 2.0236 -4.0550 -3.3385 8 8 3.1233 -4.3113 -4.2011 9 8 1.7148 -4.8640 -2.2117 10 7 0.6712 -4.0485 -4.2941 11 6 0.6542 -3.2683 -5.5340 12 1 1.6745 -3.1361 -5.8941 13 6 -0.1677 -4.0085 -6.5911 14 6 -0.1849 -3.1941 -7.8862 15 6 -0.8125 -1.8245 -7.6191 16 1 -1.8329 -1.9564 -7.2592 17 6 -0.8289 -1.0222 -8.8946 18 7 0.0476 -1.2866 -9.8265 19 6 0.0707 -0.6072 -10.9757 20 6 -0.8273 0.3939 -11.1910 21 6 -1.7702 0.6831 -10.1830 22 8 -2.5924 1.5712 -10.3352 23 7 -1.7438 -0.0444 -9.0458 24 6 0.0094 -1.0843 -6.5620 25 6 0.0266 -1.8988 -5.2669 26 6 2.9615 -1.4995 -3.3771 27 16 2.9497 0.0082 -2.4715 28 1 -0.3933 0.4417 -0.7651 29 1 1.7924 -0.5138 0.8900 30 1 1.5614 2.4679 1.2085 31 1 3.5346 1.7704 -0.0321 32 1 1.0660 -2.6212 -0.9213 33 1 -0.1098 -4.5611 -4.0329 34 1 0.2796 -4.9841 -6.7817 35 1 -1.1879 -4.1409 -6.2311 36 1 0.8355 -3.0622 -8.2460 37 1 -0.7700 -3.7217 -8.6395 38 1 0.8032 -0.8484 -11.7319 39 1 -0.8179 0.9542 -12.1142 40 1 -2.3825 0.1364 -8.3386 41 1 1.0298 -0.9525 -6.9219 42 1 -0.4374 -0.1085 -6.3720 43 1 -0.9938 -2.0306 -4.9071 44 1 0.6125 -1.3717 -4.5139 45 1 3.4741 -1.6588 -4.3141 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_13455984_15065232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:25:08 Heat of formation + Delta-G solvation = -66.706127 kcal Electronic energy + Delta-G solvation = -33277.736968 eV Core-core repulsion = 28708.760430 eV Total energy + Delta-G solvation = -4568.976539 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.085 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -42.91124 -40.36781 -39.59056 -38.66821 -38.23159 -37.65191 -36.90167 -36.11293 -35.19850 -32.42073 -32.11975 -31.85893 -29.92498 -27.32652 -25.87500 -25.30974 -25.01676 -23.98019 -22.90263 -21.59265 -21.27722 -20.18158 -19.80308 -19.26559 -19.16654 -18.55676 -18.03072 -17.89437 -17.73120 -17.48592 -17.01010 -16.45182 -16.17038 -15.86093 -15.70226 -15.63447 -15.53865 -15.46020 -15.01714 -14.66007 -14.48685 -14.39855 -14.27464 -14.16119 -14.01052 -13.80613 -13.50057 -13.28334 -13.20187 -13.11620 -12.95206 -12.75336 -12.57207 -12.46475 -12.33804 -12.27173 -12.11327 -11.98557 -11.68962 -11.64746 -11.23605 -11.16523 -10.80417 -10.69631 -10.25573 -9.96258 -9.61418 -5.33499 -0.81983 -0.57321 -0.52194 0.20973 0.47909 0.73735 0.93150 1.04381 1.42311 1.50842 1.75372 1.93705 2.49655 2.59886 2.67229 3.13779 3.17829 3.26878 3.29731 3.41406 3.51963 3.54389 3.65096 3.71739 3.79753 3.86476 3.97348 4.03653 4.08073 4.18453 4.18982 4.20212 4.27458 4.42134 4.45598 4.54122 4.55578 4.67989 4.74122 4.81385 4.82135 4.91582 4.94669 4.98003 4.99113 5.20790 5.36608 5.38607 5.77936 6.30378 6.64417 6.75102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.026 4.026 3 Si 0.654 3.346 4 C -0.229 4.229 5 C -0.041 4.041 6 C -0.685 4.685 7 S 2.707 3.293 8 O -0.951 6.951 9 O -0.951 6.951 10 N -1.109 6.109 11 C 0.145 3.855 12 H 0.097 0.903 13 C -0.124 4.124 14 C -0.099 4.099 15 C -0.047 4.047 16 H 0.102 0.898 17 C 0.402 3.598 18 N -0.532 5.532 19 C 0.156 3.844 20 C -0.292 4.292 21 C 0.520 3.480 22 O -0.537 6.537 23 N -0.627 5.627 24 C -0.110 4.110 25 C -0.140 4.140 26 C -0.087 4.087 27 S 0.159 5.841 28 H 0.380 0.620 29 H 0.127 0.873 30 H -0.231 1.231 31 H -0.237 1.237 32 H 0.157 0.843 33 H 0.421 0.579 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.171 0.829 39 H 0.157 0.843 40 H 0.417 0.583 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 1.144 -1.299 1.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.140 4.140 3 Si 0.553 3.447 4 C -0.346 4.346 5 C -0.069 4.069 6 C -0.785 4.785 7 S 2.794 3.206 8 O -0.941 6.941 9 O -0.941 6.941 10 N -0.869 5.869 11 C 0.038 3.962 12 H 0.115 0.885 13 C -0.163 4.163 14 C -0.138 4.138 15 C -0.067 4.067 16 H 0.120 0.880 17 C 0.137 3.863 18 N -0.255 5.255 19 C 0.018 3.982 20 C -0.317 4.317 21 C 0.318 3.682 22 O -0.414 6.414 23 N -0.266 5.266 24 C -0.150 4.150 25 C -0.179 4.179 26 C -0.226 4.226 27 S 0.422 5.578 28 H 0.228 0.772 29 H 0.144 0.856 30 H -0.154 1.154 31 H -0.161 1.161 32 H 0.174 0.826 33 H 0.257 0.743 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.188 0.812 39 H 0.175 0.825 40 H 0.256 0.744 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.302 2.315 -0.693 2.745 hybrid contribution -1.828 -0.603 0.563 2.005 sum -0.526 1.712 -0.130 1.796 Atomic orbital electron populations 1.86556 1.16430 1.81591 1.49091 1.24444 0.85300 1.09116 0.95126 0.95181 0.82212 0.77354 0.89974 1.25064 1.07613 0.98996 1.02953 1.19589 0.98380 0.94647 0.94320 1.30058 1.14198 1.26411 1.07784 1.01665 0.73042 0.72942 0.72964 1.93618 1.50977 1.83124 1.66383 1.93623 1.84015 1.65438 1.51074 1.55608 1.34465 1.62205 1.34600 1.20961 1.01528 0.90111 0.83575 0.88488 1.21841 1.00797 0.99586 0.94060 1.21429 1.03484 0.91881 0.96996 1.20561 1.02557 0.95292 0.88317 0.87951 1.23200 0.82939 0.84612 0.95556 1.68294 1.23649 1.30883 1.02710 1.22766 0.94475 0.88268 0.92711 1.22985 1.00596 1.05301 1.02819 1.17357 0.86360 0.82428 0.82055 1.91033 1.40062 1.31416 1.78915 1.44775 1.31090 1.30547 1.20167 1.21584 1.01267 0.98475 0.93640 1.22140 1.03076 0.95411 0.97306 1.25922 0.98057 0.95905 1.02716 1.84440 1.46643 1.12715 1.13960 0.77243 0.85635 1.15386 1.16132 0.82552 0.74344 0.89940 0.90776 0.89088 0.90493 0.81228 0.82530 0.74380 0.90110 0.90794 0.90226 0.90642 0.79725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.83 12.86 -35.23 -0.45 0.38 16 2 C -0.03 0.04 2.96 36.00 0.11 0.15 16 3 Si 0.65 -1.43 30.97 -169.99 -5.26 -6.69 16 4 C -0.23 0.34 5.72 -36.00 -0.21 0.13 16 5 C -0.04 0.03 9.56 -41.21 -0.39 -0.36 16 6 C -0.68 0.83 5.00 -41.21 -0.21 0.62 16 7 S 2.71 -0.53 5.78 -107.50 -0.62 -1.15 16 8 O -0.95 -2.40 16.98 -57.17 -0.97 -3.38 16 9 O -0.95 -3.15 17.63 -57.17 -1.01 -4.16 16 10 N -1.11 4.16 5.47 -4.89 -0.03 4.13 16 11 C 0.15 -0.69 2.79 -67.93 -0.19 -0.88 16 12 H 0.10 -0.43 7.50 -51.93 -0.39 -0.82 16 13 C -0.12 0.66 5.45 -26.73 -0.15 0.51 16 14 C -0.10 0.49 4.67 -26.73 -0.12 0.37 16 15 C -0.05 0.26 2.48 -91.77 -0.23 0.04 16 16 H 0.10 -0.75 8.14 -51.93 -0.42 -1.17 16 17 C 0.40 -1.19 6.73 -155.56 -1.05 -2.24 16 18 N -0.53 0.85 9.12 -10.63 -0.10 0.75 16 19 C 0.16 -0.25 11.20 -17.55 -0.20 -0.44 16 20 C -0.29 -0.05 10.07 -39.26 -0.40 -0.44 16 21 C 0.52 1.02 7.75 -15.09 -0.12 0.91 16 22 O -0.54 -3.37 17.97 4.94 0.09 -3.28 16 23 N -0.63 1.21 5.25 -12.27 -0.06 1.14 16 24 C -0.11 0.67 5.18 -26.73 -0.14 0.53 16 25 C -0.14 0.84 5.53 -26.73 -0.15 0.69 16 26 C -0.09 0.21 9.74 29.04 0.28 0.49 16 27 S 0.16 -0.41 20.58 -107.50 -2.21 -2.62 16 28 H 0.38 -2.14 8.70 45.56 0.40 -1.74 16 29 H 0.13 -0.15 7.96 -51.93 -0.41 -0.56 16 30 H -0.23 -0.16 7.11 56.52 0.40 0.24 16 31 H -0.24 -0.01 7.11 56.52 0.40 0.39 16 32 H 0.16 -0.08 7.96 -52.49 -0.42 -0.50 16 33 H 0.42 -2.24 8.84 -34.47 -0.30 -2.54 16 34 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 35 H 0.07 -0.46 8.14 -51.93 -0.42 -0.89 16 36 H 0.09 -0.36 7.75 -51.93 -0.40 -0.77 16 37 H 0.08 -0.34 8.14 -51.93 -0.42 -0.77 16 38 H 0.17 -0.71 8.06 -52.48 -0.42 -1.13 16 39 H 0.16 -0.09 8.06 -52.49 -0.42 -0.52 16 40 H 0.42 -1.74 8.78 -40.82 -0.36 -2.09 16 41 H 0.08 -0.44 8.14 -51.93 -0.42 -0.86 16 42 H 0.07 -0.48 8.14 -51.93 -0.42 -0.91 16 43 H 0.08 -0.53 8.14 -51.93 -0.42 -0.95 16 44 H 0.07 -0.44 6.17 -51.93 -0.32 -0.76 16 45 H 0.19 -0.79 8.00 -52.49 -0.42 -1.21 16 LS Contribution 396.44 15.07 5.97 5.97 Total: 0.00 -13.75 396.44 -13.43 -27.18 By element: Atomic # 1 Polarization: -12.73 SS G_CDS: -5.63 Total: -18.36 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -3.15 Total: 0.07 kcal Atomic # 7 Polarization: 6.21 SS G_CDS: -0.19 Total: 6.03 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -2.34 Total: -10.43 kcal Atomic # 14 Polarization: -1.43 SS G_CDS: -5.26 Total: -6.69 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -2.83 Total: -3.77 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -13.75 -13.43 -27.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13455984_15065232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.522 kcal (2) G-P(sol) polarization free energy of solvation -13.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds