Wall clock time and date at job start Tue Mar 9 2021 13:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86305 * 109.47040 * 2 1 4 4 C 1.50697 * 109.47453 * 239.99856 * 2 1 3 5 5 C 1.33387 * 125.20287 * 300.00122 * 4 2 1 6 6 C 1.38427 * 114.91991 * 179.75128 * 5 4 2 7 7 S 1.76200 * 122.53924 * 180.26881 * 6 5 4 8 8 O 1.42096 * 106.40531 * 203.54470 * 7 6 5 9 9 O 1.42106 * 106.40267 * 336.46268 * 7 6 5 10 10 N 1.65598 * 107.21973 * 89.99848 * 7 6 5 11 11 C 1.46504 * 119.99577 * 65.00003 * 10 7 6 12 12 H 1.09002 * 109.47253 * 25.00401 * 11 10 7 13 13 C 1.53001 * 109.47007 * 144.99901 * 11 10 7 14 14 C 1.53003 * 109.47210 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47035 * 299.99901 * 14 13 11 16 16 H 1.09002 * 109.47515 * 300.00314 * 15 14 13 17 17 C 1.50694 * 109.46850 * 179.97438 * 15 14 13 18 18 N 1.30637 * 119.25697 * 334.72862 * 17 15 14 19 19 C 1.33522 * 121.50614 * 179.75716 * 18 17 15 20 20 C 1.36203 * 119.90896 * 0.51917 * 19 18 17 21 21 C 1.41021 * 118.59316 * 359.74346 * 20 19 18 22 22 O 1.21980 * 120.71268 * 180.02562 * 21 20 19 23 23 N 1.34757 * 119.25204 * 155.00509 * 17 15 14 24 24 C 1.53008 * 109.46756 * 59.99992 * 15 14 13 25 25 C 1.52998 * 109.47175 * 299.99552 * 24 15 14 26 26 C 1.33381 * 114.92374 * 0.25034 * 6 5 4 27 27 S 1.75886 * 125.20508 * 120.13576 * 4 2 1 28 28 H 0.96700 * 113.99933 * 60.00346 * 1 2 3 29 29 H 1.09000 * 109.47300 * 119.99878 * 2 1 3 30 30 H 1.48503 * 109.99894 * 59.99903 * 3 2 1 31 31 H 1.48497 * 110.00057 * 181.31989 * 3 2 1 32 32 H 1.08002 * 122.54190 * 0.02679 * 5 4 2 33 33 H 0.96999 * 120.00571 * 245.00337 * 10 7 6 34 34 H 1.08997 * 109.47568 * 300.00215 * 13 11 10 35 35 H 1.09000 * 109.47163 * 59.99922 * 13 11 10 36 36 H 1.08992 * 109.46896 * 59.99977 * 14 13 11 37 37 H 1.09000 * 109.47073 * 179.97438 * 14 13 11 38 38 H 1.08005 * 120.04814 * 180.26269 * 19 18 17 39 39 H 1.07999 * 120.70518 * 179.77129 * 20 19 18 40 40 H 0.96995 * 120.03769 * 359.97438 * 23 17 15 41 41 H 1.09002 * 109.46845 * 59.99912 * 24 15 14 42 42 H 1.09002 * 109.46829 * 179.97438 * 24 15 14 43 43 H 1.08992 * 109.47198 * 300.00358 * 25 24 15 44 44 H 1.08999 * 109.47161 * 179.97438 * 25 24 15 45 45 H 1.07994 * 125.20771 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.6740 -1.9812 -1.5436 6 6 2.2401 -2.4158 -2.7297 7 16 2.0236 -4.0550 -3.3385 8 8 3.1233 -4.3113 -4.2011 9 8 1.7148 -4.8640 -2.2117 10 7 0.6712 -4.0485 -4.2941 11 6 0.6542 -3.2683 -5.5340 12 1 1.6745 -3.1361 -5.8941 13 6 -0.1677 -4.0085 -6.5911 14 6 -0.1849 -3.1941 -7.8862 15 6 -0.8125 -1.8245 -7.6191 16 1 -1.8329 -1.9564 -7.2592 17 6 -0.8289 -1.0222 -8.8946 18 7 0.0476 -1.2866 -9.8265 19 6 0.0707 -0.6072 -10.9757 20 6 -0.8273 0.3939 -11.1910 21 6 -1.7702 0.6831 -10.1830 22 8 -2.5924 1.5712 -10.3352 23 7 -1.7438 -0.0444 -9.0458 24 6 0.0094 -1.0843 -6.5620 25 6 0.0266 -1.8988 -5.2669 26 6 2.9615 -1.4995 -3.3771 27 16 2.9497 0.0082 -2.4715 28 1 -0.3933 0.4417 -0.7651 29 1 1.7924 -0.5138 0.8900 30 1 1.5614 2.4679 1.2085 31 1 3.5346 1.7704 -0.0321 32 1 1.0660 -2.6212 -0.9213 33 1 -0.1098 -4.5611 -4.0329 34 1 0.2796 -4.9841 -6.7817 35 1 -1.1879 -4.1409 -6.2311 36 1 0.8355 -3.0622 -8.2460 37 1 -0.7700 -3.7217 -8.6395 38 1 0.8032 -0.8484 -11.7319 39 1 -0.8179 0.9542 -12.1142 40 1 -2.3825 0.1364 -8.3386 41 1 1.0298 -0.9525 -6.9219 42 1 -0.4374 -0.1085 -6.3720 43 1 -0.9938 -2.0306 -4.9071 44 1 0.6125 -1.3717 -4.5139 45 1 3.4741 -1.6588 -4.3141 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_13455984_15065232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:25:07 Heat of formation + Delta-G solvation = -74.085584 kcal Electronic energy + Delta-G solvation = -33278.056966 eV Core-core repulsion = 28708.760430 eV Total energy + Delta-G solvation = -4569.296536 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.085 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.83138 -40.07823 -39.45742 -38.69411 -38.30729 -37.50454 -37.00064 -35.90840 -35.06197 -32.24380 -31.87437 -31.58697 -29.66836 -27.18910 -25.72336 -25.18936 -24.89747 -23.55974 -22.63490 -21.43481 -20.95917 -20.05254 -19.70616 -19.11973 -19.10223 -18.47345 -17.87836 -17.74838 -17.62573 -17.30207 -16.97749 -16.32030 -16.07978 -15.72933 -15.57661 -15.45663 -15.32444 -15.10677 -14.88559 -14.48932 -14.29524 -14.19297 -14.14287 -14.02913 -13.90512 -13.66108 -13.32696 -13.22294 -13.15682 -13.03579 -12.89204 -12.55966 -12.40056 -12.19760 -12.08077 -11.98869 -11.95502 -11.67795 -11.51605 -11.36893 -11.22202 -11.01445 -10.66284 -10.38491 -10.09559 -9.79890 -9.61232 -5.19532 -0.74402 -0.44190 -0.39352 0.36725 0.61998 0.73898 1.03050 1.18185 1.53708 1.62291 1.85804 2.08537 2.56281 2.71780 2.84366 3.25242 3.45416 3.47970 3.63477 3.66975 3.71940 3.80511 3.93901 4.04112 4.15806 4.20940 4.24604 4.33833 4.38619 4.41401 4.46113 4.54599 4.56835 4.66620 4.69346 4.88340 4.93670 4.94714 4.95373 5.08075 5.16250 5.22195 5.31383 5.36568 5.41010 5.43839 5.54336 5.63976 6.13004 6.68654 6.72644 6.77119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.030 4.030 3 Si 0.731 3.269 4 C -0.234 4.234 5 C -0.051 4.051 6 C -0.689 4.689 7 S 2.722 3.278 8 O -0.983 6.983 9 O -0.992 6.992 10 N -1.097 6.097 11 C 0.139 3.861 12 H 0.093 0.907 13 C -0.120 4.120 14 C -0.095 4.095 15 C -0.043 4.043 16 H 0.128 0.872 17 C 0.410 3.590 18 N -0.544 5.544 19 C 0.174 3.826 20 C -0.321 4.321 21 C 0.509 3.491 22 O -0.594 6.594 23 N -0.615 5.615 24 C -0.108 4.108 25 C -0.136 4.136 26 C -0.085 4.085 27 S 0.188 5.812 28 H 0.398 0.602 29 H 0.118 0.882 30 H -0.273 1.273 31 H -0.265 1.265 32 H 0.149 0.851 33 H 0.430 0.570 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.196 0.804 39 H 0.156 0.844 40 H 0.429 0.571 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.866 1.117 -1.473 2.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.143 4.143 3 Si 0.634 3.366 4 C -0.352 4.352 5 C -0.080 4.080 6 C -0.790 4.790 7 S 2.811 3.189 8 O -0.972 6.972 9 O -0.983 6.983 10 N -0.859 5.859 11 C 0.032 3.968 12 H 0.111 0.889 13 C -0.159 4.159 14 C -0.134 4.134 15 C -0.063 4.063 16 H 0.146 0.854 17 C 0.146 3.854 18 N -0.267 5.267 19 C 0.034 3.966 20 C -0.345 4.345 21 C 0.310 3.690 22 O -0.477 6.477 23 N -0.252 5.252 24 C -0.147 4.147 25 C -0.175 4.175 26 C -0.224 4.224 27 S 0.452 5.548 28 H 0.248 0.752 29 H 0.135 0.865 30 H -0.198 1.198 31 H -0.191 1.191 32 H 0.167 0.833 33 H 0.267 0.733 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.213 0.787 39 H 0.174 0.826 40 H 0.270 0.730 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.095 0.905 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.239 2.227 -0.854 2.688 hybrid contribution -1.754 -0.631 0.666 1.979 sum -0.514 1.596 -0.188 1.687 Atomic orbital electron populations 1.86518 1.16340 1.82060 1.50442 1.24505 0.85541 1.09383 0.94859 0.94325 0.79298 0.75164 0.87838 1.25121 1.07784 0.98961 1.03324 1.19589 0.98881 0.94956 0.94605 1.29781 1.15323 1.25818 1.08067 1.00858 0.73027 0.72879 0.72184 1.93575 1.52763 1.83954 1.66949 1.93564 1.84660 1.67229 1.52812 1.55295 1.33699 1.62516 1.34393 1.21149 1.01793 0.90829 0.82998 0.88899 1.21813 1.01505 0.99009 0.93588 1.21371 1.02916 0.92135 0.97022 1.20719 1.04169 0.94413 0.87021 0.85409 1.23778 0.81745 0.83763 0.96079 1.68394 1.24188 1.31103 1.03011 1.23156 0.93695 0.86710 0.92990 1.22988 1.01655 1.06925 1.02982 1.17635 0.86079 0.82115 0.83155 1.90991 1.42394 1.34055 1.80267 1.44625 1.31197 1.29915 1.19468 1.21578 1.01034 0.98865 0.93198 1.22115 1.03773 0.94348 0.97301 1.26213 0.97219 0.95749 1.03207 1.84359 1.45650 1.11931 1.12904 0.75195 0.86513 1.19839 1.19085 0.83335 0.73254 0.90679 0.89195 0.90084 0.90757 0.78709 0.82640 0.73048 0.90544 0.89702 0.88865 0.90532 0.77925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.95 12.86 -148.98 -1.92 0.03 16 2 C -0.03 0.10 2.96 71.24 0.21 0.31 16 3 Si 0.73 -3.28 30.97 68.60 2.12 -1.15 16 4 C -0.23 0.79 5.72 24.59 0.14 0.93 16 5 C -0.05 0.07 9.56 21.22 0.20 0.28 16 6 C -0.69 1.80 5.00 21.22 0.11 1.90 16 7 S 2.72 0.20 5.78 -56.49 -0.33 -0.13 16 8 O -0.98 -5.51 16.98 -128.00 -2.17 -7.68 16 9 O -0.99 -7.78 17.63 -128.00 -2.26 -10.04 16 10 N -1.10 8.74 5.47 -169.37 -0.93 7.81 16 11 C 0.14 -1.49 2.79 44.99 0.13 -1.36 16 12 H 0.09 -0.89 7.50 -2.39 -0.02 -0.91 16 13 C -0.12 1.45 5.45 30.60 0.17 1.62 16 14 C -0.10 1.09 4.67 30.60 0.14 1.23 16 15 C -0.04 0.57 2.48 -11.54 -0.03 0.54 16 16 H 0.13 -2.26 8.14 -2.39 -0.02 -2.28 16 17 C 0.41 -2.92 6.73 138.18 0.93 -1.99 16 18 N -0.54 2.30 9.12 -187.55 -1.71 0.59 16 19 C 0.17 -0.65 11.20 83.96 0.94 0.29 16 20 C -0.32 -0.34 10.07 22.48 0.23 -0.12 16 21 C 0.51 2.51 7.75 84.89 0.66 3.17 16 22 O -0.59 -8.68 17.97 -5.25 -0.09 -8.78 16 23 N -0.61 2.62 5.25 -310.69 -1.63 0.99 16 24 C -0.11 1.53 5.18 30.60 0.16 1.69 16 25 C -0.14 1.91 5.53 30.59 0.17 2.08 16 26 C -0.08 0.48 9.74 66.72 0.65 1.13 16 27 S 0.19 -1.18 20.58 -56.49 -1.16 -2.34 16 28 H 0.40 -4.91 8.70 -74.06 -0.64 -5.55 16 29 H 0.12 -0.22 7.96 -2.39 -0.02 -0.24 16 30 H -0.27 -0.65 7.11 99.48 0.71 0.06 16 31 H -0.26 -0.01 7.11 99.48 0.71 0.70 16 32 H 0.15 -0.03 7.96 -2.91 -0.02 -0.05 16 33 H 0.43 -4.83 8.84 -96.74 -0.85 -5.68 16 34 H 0.07 -0.75 8.14 -2.39 -0.02 -0.77 16 35 H 0.09 -1.34 8.14 -2.39 -0.02 -1.36 16 36 H 0.08 -0.72 7.75 -2.39 -0.02 -0.74 16 37 H 0.07 -0.76 8.14 -2.39 -0.02 -0.78 16 38 H 0.20 -1.88 8.06 -2.91 -0.02 -1.90 16 39 H 0.16 0.05 8.06 -2.91 -0.02 0.03 16 40 H 0.43 -3.88 8.78 -92.71 -0.81 -4.69 16 41 H 0.08 -0.97 8.14 -2.39 -0.02 -0.99 16 42 H 0.08 -1.32 8.14 -2.39 -0.02 -1.34 16 43 H 0.09 -1.50 8.14 -2.39 -0.02 -1.52 16 44 H 0.08 -1.03 6.17 -2.39 -0.01 -1.05 16 45 H 0.20 -2.00 8.00 -2.91 -0.02 -2.02 16 Total: 0.00 -33.62 396.44 -6.47 -40.10 By element: Atomic # 1 Polarization: -29.89 SS G_CDS: -1.20 Total: -31.09 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 4.80 Total: 11.70 kcal Atomic # 7 Polarization: 13.66 SS G_CDS: -4.27 Total: 9.39 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -6.44 Total: -26.46 kcal Atomic # 14 Polarization: -3.28 SS G_CDS: 2.12 Total: -1.15 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -1.49 Total: -2.47 kcal Total: -33.62 -6.47 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13455984_15065232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.988 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds