Wall clock time and date at job start Tue Mar 9 2021 13:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86301 * 109.47472 * 2 1 4 4 C 1.50708 * 109.46466 * 119.99778 * 2 1 3 5 5 C 1.33383 * 125.20579 * 65.34197 * 4 2 1 6 6 C 1.38424 * 114.92182 * 180.20512 * 5 4 2 7 7 S 1.76206 * 122.53795 * 179.75633 * 6 5 4 8 8 O 1.42097 * 106.39860 * 156.19572 * 7 6 5 9 9 O 1.42100 * 106.40273 * 23.27905 * 7 6 5 10 10 N 1.65600 * 107.21893 * 269.73378 * 7 6 5 11 11 C 1.46503 * 119.99669 * 65.00262 * 10 7 6 12 12 C 1.52995 * 109.47035 * 165.21074 * 11 10 7 13 13 C 1.50701 * 112.85027 * 301.11598 * 12 11 10 14 14 C 1.38238 * 119.99629 * 283.15469 * 13 12 11 15 15 C 1.38232 * 119.99711 * 179.97438 * 14 13 12 16 16 C 1.38232 * 120.00381 * 0.27347 * 15 14 13 17 17 C 1.38243 * 119.99934 * 359.51198 * 16 15 14 18 18 C 1.38234 * 120.00389 * 103.13097 * 13 12 11 19 19 C 1.53779 * 113.61618 * 169.91397 * 12 11 10 20 20 C 1.53775 * 87.08201 * 270.80062 * 19 12 11 21 21 H 1.09007 * 113.61409 * 89.20158 * 20 19 12 22 22 F 1.39901 * 113.61384 * 220.01703 * 20 19 12 23 23 C 1.53776 * 87.08235 * 334.56502 * 20 19 12 24 24 C 1.33384 * 114.91935 * 359.48684 * 6 5 4 25 25 S 1.75882 * 109.59650 * 0.27234 * 24 6 5 26 26 H 0.96705 * 113.99015 * 60.00177 * 1 2 3 27 27 H 1.09000 * 109.47455 * 239.99734 * 2 1 3 28 28 H 1.48508 * 109.99861 * 59.99543 * 3 2 1 29 29 H 1.48494 * 110.00133 * 181.31537 * 3 2 1 30 30 H 1.08004 * 122.54076 * 359.95867 * 5 4 2 31 31 H 0.96998 * 120.00298 * 245.00006 * 10 7 6 32 32 H 1.09001 * 109.46969 * 45.20897 * 11 10 7 33 33 H 1.09001 * 109.46960 * 285.21046 * 11 10 7 34 34 H 1.07994 * 120.00096 * 359.97254 * 14 13 12 35 35 H 1.08006 * 119.99800 * 180.02562 * 15 14 13 36 36 H 1.08000 * 120.00419 * 179.73190 * 16 15 14 37 37 H 1.07992 * 120.00053 * 180.27846 * 17 16 15 38 38 H 1.07998 * 119.99796 * 359.97438 * 18 13 12 39 39 H 1.09001 * 113.61543 * 25.35266 * 19 12 11 40 40 H 1.09003 * 113.61436 * 156.25248 * 19 12 11 41 41 H 1.08999 * 113.61722 * 270.87896 * 23 20 19 42 42 H 1.08999 * 113.61344 * 139.98080 * 23 20 19 43 43 H 1.08001 * 125.19858 * 180.28741 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 1.7588 -2.0065 1.4945 6 6 2.3060 -2.4359 2.6913 7 16 2.1906 -4.1060 3.2410 8 8 3.2729 -4.3084 4.1392 9 8 1.9866 -4.8978 2.0788 10 7 0.8062 -4.2313 4.1412 11 6 -0.5000 -4.0383 3.5066 12 6 -1.5996 -4.5590 4.4343 13 6 -1.4386 -6.0192 4.7706 14 6 -1.7872 -6.9843 3.8443 15 6 -1.6390 -8.3236 4.1526 16 6 -1.1477 -8.6980 5.3893 17 6 -0.7949 -7.7328 6.3140 18 6 -0.9420 -6.3934 6.0052 19 6 -3.0195 -4.1850 3.9773 20 6 -2.8614 -2.8975 4.8032 21 1 -2.4242 -2.0706 4.2434 22 9 -4.0194 -2.5314 5.4976 23 6 -1.8450 -3.6673 5.6629 24 6 2.9321 -1.4908 3.3941 25 16 2.8414 0.0410 2.5347 26 1 -0.3932 0.4417 -0.7652 27 1 1.7924 -0.5139 -0.8899 28 1 1.5615 2.4679 1.2085 29 1 3.5347 1.7702 -0.0320 30 1 1.2287 -2.6697 0.8270 31 1 0.8602 -4.4324 5.0885 32 1 -0.5305 -4.5853 2.5642 33 1 -0.6581 -2.9768 3.3158 34 1 -2.1752 -6.6919 2.8799 35 1 -1.9110 -9.0776 3.4288 36 1 -1.0360 -9.7445 5.6317 37 1 -0.4068 -8.0252 7.2784 38 1 -0.6689 -5.6394 6.7285 39 1 -3.1007 -4.0085 2.9047 40 1 -3.7910 -4.8551 4.3566 41 1 -2.2954 -4.1958 6.5031 42 1 -0.9780 -3.0729 5.9512 43 1 3.4203 -1.6431 4.3454 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_13458986_15065232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:25:36 Heat of formation + Delta-G solvation = -59.795363 kcal Electronic energy + Delta-G solvation = -31514.125926 eV Core-core repulsion = 27081.066718 eV Total energy + Delta-G solvation = -4433.059208 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.070 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -48.53606 -41.46746 -39.48615 -38.92520 -38.24440 -37.65637 -36.87358 -35.55376 -32.06818 -32.00221 -31.87710 -28.16009 -27.29080 -27.15149 -25.07662 -24.84520 -23.25038 -22.58476 -21.26573 -20.36875 -20.00830 -19.12930 -18.63276 -18.50862 -18.34041 -17.83302 -17.57429 -16.89594 -16.64018 -16.41558 -16.20548 -15.90497 -15.56119 -15.48216 -15.37626 -15.15423 -14.85612 -14.55206 -14.32931 -14.31299 -14.22422 -14.13869 -13.78539 -13.70920 -13.51167 -13.31470 -13.14194 -13.04144 -12.91129 -12.68796 -12.48929 -12.39733 -12.26006 -12.17608 -11.88445 -11.84427 -11.46880 -11.35547 -10.69489 -10.63994 -10.25346 -9.93540 -9.83236 -9.66029 -5.39790 -0.80218 -0.54235 0.24953 0.40476 0.48552 0.52339 0.92868 1.02340 1.42511 1.72655 1.98213 2.68169 2.81484 3.02788 3.05166 3.11480 3.28294 3.36597 3.42855 3.55026 3.61382 3.75274 3.76910 4.00411 4.05632 4.08538 4.11347 4.20656 4.23294 4.26090 4.39239 4.49108 4.53734 4.54799 4.60739 4.62997 4.64255 4.80407 4.81333 4.84594 4.99182 5.06079 5.10914 5.17477 5.55703 5.60848 5.63376 5.78377 6.06834 6.37617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.035 4.035 3 Si 0.671 3.329 4 C -0.181 4.181 5 C -0.042 4.042 6 C -0.688 4.688 7 S 2.711 3.289 8 O -0.953 6.953 9 O -0.945 6.945 10 N -1.111 6.111 11 C 0.142 3.858 12 C -0.047 4.047 13 C -0.065 4.065 14 C -0.109 4.109 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.117 4.117 18 C -0.118 4.118 19 C -0.142 4.142 20 C 0.064 3.936 21 H 0.112 0.888 22 F -0.204 7.204 23 C -0.152 4.152 24 C -0.079 4.079 25 S 0.140 5.860 26 H 0.386 0.614 27 H 0.088 0.912 28 H -0.234 1.234 29 H -0.239 1.239 30 H 0.159 0.841 31 H 0.420 0.580 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.052 3.522 -2.758 4.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.149 4.149 3 Si 0.570 3.430 4 C -0.299 4.299 5 C -0.070 4.070 6 C -0.787 4.787 7 S 2.797 3.203 8 O -0.943 6.943 9 O -0.935 6.935 10 N -0.872 5.872 11 C 0.016 3.984 12 C -0.049 4.049 13 C -0.065 4.065 14 C -0.127 4.127 15 C -0.133 4.133 16 C -0.139 4.139 17 C -0.135 4.135 18 C -0.136 4.136 19 C -0.181 4.181 20 C 0.028 3.972 21 H 0.129 0.871 22 F -0.185 7.185 23 C -0.190 4.190 24 C -0.218 4.218 25 S 0.403 5.597 26 H 0.235 0.765 27 H 0.106 0.894 28 H -0.158 1.158 29 H -0.163 1.163 30 H 0.177 0.823 31 H 0.256 0.744 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.107 0.893 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.392 4.716 -1.872 5.089 hybrid contribution -0.650 -1.251 0.261 1.434 sum -1.043 3.464 -1.611 3.960 Atomic orbital electron populations 1.86485 1.16630 1.81895 1.49951 1.23986 0.86003 1.09762 0.95103 0.94709 0.82001 0.77963 0.88327 1.23690 1.08300 0.97047 1.00830 1.19614 0.97917 0.94797 0.94699 1.30086 1.15715 1.26426 1.06458 1.01588 0.72244 0.73077 0.73392 1.93618 1.51067 1.84923 1.64735 1.93607 1.85223 1.65159 1.49509 1.55423 1.20299 1.88037 1.23394 1.21153 0.80597 1.00870 0.95789 1.20660 0.95044 0.92238 0.96931 1.19340 0.99664 0.93067 0.94476 1.20982 0.99954 0.92673 0.99131 1.21192 0.99143 0.96087 0.96918 1.21230 0.98950 0.99707 0.93975 1.21181 0.99723 0.92941 0.99645 1.21019 0.99960 0.96286 0.96317 1.23686 0.95901 0.96734 1.01732 1.23107 0.83248 0.96869 0.93942 0.87074 1.92829 1.51502 1.93416 1.80743 1.23771 0.99876 0.97833 0.97531 1.25934 0.97967 0.95334 1.02544 1.84524 1.50829 1.11307 1.13029 0.76511 0.89439 1.15781 1.16295 0.82338 0.74439 0.89036 0.90641 0.85891 0.85844 0.85979 0.85887 0.86002 0.89285 0.87804 0.87857 0.89604 0.79576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.88 12.86 -35.23 -0.45 0.43 16 2 C -0.04 0.05 2.95 36.01 0.11 0.15 16 3 Si 0.67 -1.36 30.98 -169.99 -5.27 -6.63 16 4 C -0.18 -0.20 5.73 -36.00 -0.21 -0.41 16 5 C -0.04 -0.05 9.59 -41.21 -0.40 -0.44 16 6 C -0.69 -0.69 5.86 -41.21 -0.24 -0.94 16 7 S 2.71 4.32 5.80 -107.50 -0.62 3.70 16 8 O -0.95 -4.04 17.64 -57.17 -1.01 -5.04 16 9 O -0.95 -4.15 17.10 -57.17 -0.98 -5.13 16 10 N -1.11 1.32 5.69 -10.61 -0.06 1.26 16 11 C 0.14 -0.29 5.48 -4.04 -0.02 -0.31 16 12 C -0.05 0.09 0.63 -154.85 -0.10 -0.01 16 13 C -0.07 0.02 4.45 -104.62 -0.47 -0.45 16 14 C -0.11 -0.03 9.39 -39.58 -0.37 -0.40 16 15 C -0.12 -0.07 10.05 -39.59 -0.40 -0.47 16 16 C -0.12 -0.07 10.05 -39.58 -0.40 -0.47 16 17 C -0.12 -0.04 10.05 -39.58 -0.40 -0.44 16 18 C -0.12 0.02 8.67 -39.58 -0.34 -0.32 16 19 C -0.14 0.29 6.78 -25.92 -0.18 0.12 16 20 C 0.06 -0.09 5.32 -25.92 -0.14 -0.22 16 21 H 0.11 -0.31 7.60 -51.93 -0.39 -0.71 16 22 F -0.20 -0.42 17.41 2.25 0.04 -0.39 16 23 C -0.15 0.33 6.03 -25.92 -0.16 0.17 16 24 C -0.08 -0.03 10.70 29.04 0.31 0.28 16 25 S 0.14 0.13 20.60 -107.50 -2.21 -2.09 16 26 H 0.39 -2.52 8.74 45.56 0.40 -2.13 16 27 H 0.09 -0.26 7.96 -51.93 -0.41 -0.67 16 28 H -0.23 -0.18 7.11 56.52 0.40 0.23 16 29 H -0.24 -0.09 7.11 56.52 0.40 0.31 16 30 H 0.16 0.04 7.96 -52.48 -0.42 -0.38 16 31 H 0.42 -0.99 8.15 -34.47 -0.28 -1.28 16 32 H 0.09 -0.16 7.76 -51.93 -0.40 -0.57 16 33 H 0.08 -0.26 7.31 -51.93 -0.38 -0.64 16 34 H 0.12 -0.14 8.03 -52.49 -0.42 -0.56 16 35 H 0.12 -0.11 8.06 -52.48 -0.42 -0.53 16 36 H 0.12 -0.10 8.06 -52.49 -0.42 -0.53 16 37 H 0.12 -0.14 8.06 -52.49 -0.42 -0.57 16 38 H 0.12 -0.24 7.01 -52.49 -0.37 -0.60 16 39 H 0.09 -0.29 8.10 -51.93 -0.42 -0.71 16 40 H 0.10 -0.13 8.09 -51.93 -0.42 -0.55 16 41 H 0.10 -0.16 7.43 -51.93 -0.39 -0.55 16 42 H 0.09 -0.28 8.10 -51.93 -0.42 -0.70 16 43 H 0.19 -0.33 8.00 -52.49 -0.42 -0.75 16 LS Contribution 388.44 15.07 5.85 5.85 Total: 0.00 -10.75 388.44 -13.31 -24.07 By element: Atomic # 1 Polarization: -6.66 SS G_CDS: -5.21 Total: -11.88 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -3.39 Total: -4.15 kcal Atomic # 7 Polarization: 1.32 SS G_CDS: -0.06 Total: 1.26 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -2.44 Total: -9.75 kcal Atomic # 9 Polarization: -0.42 SS G_CDS: 0.04 Total: -0.39 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: -5.27 Total: -6.63 kcal Atomic # 16 Polarization: 4.45 SS G_CDS: -2.84 Total: 1.61 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -10.75 -13.31 -24.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13458986_15065232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.729 kcal (2) G-P(sol) polarization free energy of solvation -10.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds