Wall clock time and date at job start Tue Mar 9 2021 13:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86301 * 109.47472 * 2 1 4 4 C 1.50708 * 109.46466 * 119.99778 * 2 1 3 5 5 C 1.33383 * 125.20579 * 65.34197 * 4 2 1 6 6 C 1.38424 * 114.92182 * 180.20512 * 5 4 2 7 7 S 1.76206 * 122.53795 * 179.75633 * 6 5 4 8 8 O 1.42097 * 106.39860 * 156.19572 * 7 6 5 9 9 O 1.42100 * 106.40273 * 23.27905 * 7 6 5 10 10 N 1.65600 * 107.21893 * 269.73378 * 7 6 5 11 11 C 1.46503 * 119.99669 * 65.00262 * 10 7 6 12 12 C 1.52995 * 109.47035 * 165.21074 * 11 10 7 13 13 C 1.50701 * 112.85027 * 301.11598 * 12 11 10 14 14 C 1.38238 * 119.99629 * 283.15469 * 13 12 11 15 15 C 1.38232 * 119.99711 * 179.97438 * 14 13 12 16 16 C 1.38232 * 120.00381 * 0.27347 * 15 14 13 17 17 C 1.38243 * 119.99934 * 359.51198 * 16 15 14 18 18 C 1.38234 * 120.00389 * 103.13097 * 13 12 11 19 19 C 1.53779 * 113.61618 * 169.91397 * 12 11 10 20 20 C 1.53775 * 87.08201 * 270.80062 * 19 12 11 21 21 H 1.09007 * 113.61409 * 89.20158 * 20 19 12 22 22 F 1.39901 * 113.61384 * 220.01703 * 20 19 12 23 23 C 1.53776 * 87.08235 * 334.56502 * 20 19 12 24 24 C 1.33384 * 114.91935 * 359.48684 * 6 5 4 25 25 S 1.75882 * 109.59650 * 0.27234 * 24 6 5 26 26 H 0.96705 * 113.99015 * 60.00177 * 1 2 3 27 27 H 1.09000 * 109.47455 * 239.99734 * 2 1 3 28 28 H 1.48508 * 109.99861 * 59.99543 * 3 2 1 29 29 H 1.48494 * 110.00133 * 181.31537 * 3 2 1 30 30 H 1.08004 * 122.54076 * 359.95867 * 5 4 2 31 31 H 0.96998 * 120.00298 * 245.00006 * 10 7 6 32 32 H 1.09001 * 109.46969 * 45.20897 * 11 10 7 33 33 H 1.09001 * 109.46960 * 285.21046 * 11 10 7 34 34 H 1.07994 * 120.00096 * 359.97254 * 14 13 12 35 35 H 1.08006 * 119.99800 * 180.02562 * 15 14 13 36 36 H 1.08000 * 120.00419 * 179.73190 * 16 15 14 37 37 H 1.07992 * 120.00053 * 180.27846 * 17 16 15 38 38 H 1.07998 * 119.99796 * 359.97438 * 18 13 12 39 39 H 1.09001 * 113.61543 * 25.35266 * 19 12 11 40 40 H 1.09003 * 113.61436 * 156.25248 * 19 12 11 41 41 H 1.08999 * 113.61722 * 270.87896 * 23 20 19 42 42 H 1.08999 * 113.61344 * 139.98080 * 23 20 19 43 43 H 1.08001 * 125.19858 * 180.28741 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 1.7588 -2.0065 1.4945 6 6 2.3060 -2.4359 2.6913 7 16 2.1906 -4.1060 3.2410 8 8 3.2729 -4.3084 4.1392 9 8 1.9866 -4.8978 2.0788 10 7 0.8062 -4.2313 4.1412 11 6 -0.5000 -4.0383 3.5066 12 6 -1.5996 -4.5590 4.4343 13 6 -1.4386 -6.0192 4.7706 14 6 -1.7872 -6.9843 3.8443 15 6 -1.6390 -8.3236 4.1526 16 6 -1.1477 -8.6980 5.3893 17 6 -0.7949 -7.7328 6.3140 18 6 -0.9420 -6.3934 6.0052 19 6 -3.0195 -4.1850 3.9773 20 6 -2.8614 -2.8975 4.8032 21 1 -2.4242 -2.0706 4.2434 22 9 -4.0194 -2.5314 5.4976 23 6 -1.8450 -3.6673 5.6629 24 6 2.9321 -1.4908 3.3941 25 16 2.8414 0.0410 2.5347 26 1 -0.3932 0.4417 -0.7652 27 1 1.7924 -0.5139 -0.8899 28 1 1.5615 2.4679 1.2085 29 1 3.5347 1.7702 -0.0320 30 1 1.2287 -2.6697 0.8270 31 1 0.8602 -4.4324 5.0885 32 1 -0.5305 -4.5853 2.5642 33 1 -0.6581 -2.9768 3.3158 34 1 -2.1752 -6.6919 2.8799 35 1 -1.9110 -9.0776 3.4288 36 1 -1.0360 -9.7445 5.6317 37 1 -0.4068 -8.0252 7.2784 38 1 -0.6689 -5.6394 6.7285 39 1 -3.1007 -4.0085 2.9047 40 1 -3.7910 -4.8551 4.3566 41 1 -2.2954 -4.1958 6.5031 42 1 -0.9780 -3.0729 5.9512 43 1 3.4203 -1.6431 4.3454 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_13458986_15065232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:25:35 Heat of formation + Delta-G solvation = -60.413676 kcal Electronic energy + Delta-G solvation = -31514.152738 eV Core-core repulsion = 27081.066718 eV Total energy + Delta-G solvation = -4433.086020 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.070 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -48.55387 -41.36883 -39.47234 -38.85891 -38.46415 -37.51779 -37.10452 -35.48823 -32.03817 -31.95347 -31.83666 -28.05900 -27.24983 -26.99701 -25.02613 -24.81382 -23.21160 -22.51460 -21.28496 -20.35631 -19.97572 -19.13247 -18.57360 -18.41992 -18.34591 -17.87157 -17.49734 -16.91389 -16.56356 -16.38642 -16.17769 -15.90753 -15.50326 -15.46995 -15.35363 -15.06911 -14.78313 -14.55275 -14.31781 -14.26084 -14.21877 -14.12927 -13.73928 -13.67766 -13.48722 -13.40884 -13.33742 -13.23146 -12.91311 -12.67955 -12.40141 -12.31867 -12.24627 -12.10696 -11.91688 -11.79905 -11.37830 -11.20469 -10.60524 -10.53232 -10.23493 -9.97150 -9.81788 -9.63053 -5.25084 -0.89506 -0.58635 0.22990 0.42809 0.49456 0.50317 0.89394 1.15285 1.53816 1.83718 1.96161 2.58565 2.83950 3.07970 3.17346 3.25112 3.37935 3.47392 3.56579 3.65778 3.71469 3.86294 3.90016 4.10369 4.12606 4.12785 4.20937 4.29425 4.36032 4.40402 4.52179 4.53541 4.64009 4.68394 4.71249 4.75547 4.77114 4.79146 4.95555 4.97397 4.98800 5.12051 5.15738 5.31545 5.58505 5.64174 5.64748 5.90978 6.11063 6.83052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.041 4.041 3 Si 0.751 3.249 4 C -0.193 4.193 5 C -0.051 4.051 6 C -0.689 4.689 7 S 2.729 3.271 8 O -0.983 6.983 9 O -0.976 6.976 10 N -1.101 6.101 11 C 0.136 3.864 12 C -0.038 4.038 13 C -0.069 4.069 14 C -0.123 4.123 15 C -0.131 4.131 16 C -0.137 4.137 17 C -0.131 4.131 18 C -0.126 4.126 19 C -0.139 4.139 20 C 0.056 3.944 21 H 0.129 0.871 22 F -0.226 7.226 23 C -0.150 4.150 24 C -0.077 4.077 25 S 0.121 5.879 26 H 0.407 0.593 27 H 0.108 0.892 28 H -0.274 1.274 29 H -0.274 1.274 30 H 0.166 0.834 31 H 0.427 0.573 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.426 4.211 -3.316 5.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.154 4.154 3 Si 0.654 3.346 4 C -0.310 4.310 5 C -0.079 4.079 6 C -0.789 4.789 7 S 2.817 3.183 8 O -0.973 6.973 9 O -0.966 6.966 10 N -0.864 5.864 11 C 0.011 3.989 12 C -0.040 4.040 13 C -0.069 4.069 14 C -0.141 4.141 15 C -0.149 4.149 16 C -0.155 4.155 17 C -0.149 4.149 18 C -0.144 4.144 19 C -0.178 4.178 20 C 0.020 3.980 21 H 0.147 0.853 22 F -0.206 7.206 23 C -0.187 4.187 24 C -0.215 4.215 25 S 0.384 5.616 26 H 0.259 0.741 27 H 0.125 0.875 28 H -0.200 1.200 29 H -0.200 1.200 30 H 0.184 0.816 31 H 0.264 0.736 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.788 5.382 -2.449 5.965 hybrid contribution -0.554 -1.429 0.454 1.599 sum -1.342 3.953 -1.995 4.626 Atomic orbital electron populations 1.86435 1.16183 1.82427 1.51607 1.24097 0.86508 1.09933 0.94813 0.93819 0.78748 0.76002 0.86033 1.24050 1.08207 0.97247 1.01511 1.19762 0.98223 0.95043 0.94904 1.29959 1.16343 1.25841 1.06784 1.00761 0.72077 0.72907 0.72567 1.93574 1.52802 1.85567 1.65354 1.93566 1.85723 1.66443 1.50837 1.55153 1.19828 1.87879 1.23550 1.21334 0.79800 1.02155 0.95622 1.20562 0.95100 0.91230 0.97100 1.19537 0.99163 0.93884 0.94333 1.21223 1.00177 0.92796 0.99866 1.21428 0.99461 0.96701 0.97302 1.21457 0.99336 1.00419 0.94259 1.21440 0.99892 0.93321 1.00206 1.21277 0.99802 0.96556 0.96794 1.23662 0.95382 0.96141 1.02567 1.23400 0.82623 0.97711 0.94237 0.85304 1.92784 1.52886 1.93637 1.81336 1.23765 1.00122 0.97680 0.97180 1.26190 0.97482 0.94791 1.03082 1.84630 1.51279 1.11975 1.13708 0.74054 0.87451 1.19999 1.20035 0.81633 0.73595 0.89105 0.88655 0.84849 0.84984 0.85135 0.84805 0.84463 0.87800 0.88763 0.88480 0.88195 0.77845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.64 12.86 -148.98 -1.92 0.72 16 2 C -0.04 0.15 2.95 71.24 0.21 0.36 16 3 Si 0.75 -3.23 30.98 68.60 2.13 -1.10 16 4 C -0.19 -0.33 5.73 24.59 0.14 -0.19 16 5 C -0.05 -0.10 9.59 21.22 0.20 0.11 16 6 C -0.69 -1.23 5.86 21.22 0.12 -1.11 16 7 S 2.73 9.00 5.80 -56.49 -0.33 8.68 16 8 O -0.98 -8.70 17.64 -128.00 -2.26 -10.96 16 9 O -0.98 -8.98 17.10 -128.00 -2.19 -11.17 16 10 N -1.10 3.15 5.69 -187.49 -1.07 2.09 16 11 C 0.14 -0.68 5.48 86.38 0.47 -0.20 16 12 C -0.04 0.18 0.63 -52.40 -0.03 0.14 16 13 C -0.07 0.05 4.45 -19.86 -0.09 -0.04 16 14 C -0.12 -0.11 9.39 22.27 0.21 0.10 16 15 C -0.13 -0.25 10.05 22.27 0.22 -0.03 16 16 C -0.14 -0.27 10.05 22.27 0.22 -0.05 16 17 C -0.13 -0.15 10.05 22.27 0.22 0.08 16 18 C -0.13 0.04 8.67 22.27 0.19 0.23 16 19 C -0.14 0.66 6.78 31.12 0.21 0.87 16 20 C 0.06 -0.20 5.32 31.12 0.17 -0.03 16 21 H 0.13 -0.93 7.60 -2.38 -0.02 -0.95 16 22 F -0.23 -0.93 17.41 44.97 0.78 -0.15 16 23 C -0.15 0.76 6.03 31.12 0.19 0.95 16 24 C -0.08 -0.04 10.70 66.72 0.71 0.67 16 25 S 0.12 0.24 20.60 -56.49 -1.16 -0.92 16 26 H 0.41 -6.08 8.74 -74.05 -0.65 -6.73 16 27 H 0.11 -0.81 7.96 -2.39 -0.02 -0.83 16 28 H -0.27 -0.60 7.11 99.48 0.71 0.11 16 29 H -0.27 -0.37 7.11 99.48 0.71 0.34 16 30 H 0.17 -0.01 7.96 -2.91 -0.02 -0.04 16 31 H 0.43 -2.26 8.15 -96.75 -0.79 -3.05 16 32 H 0.09 -0.39 7.76 -2.39 -0.02 -0.41 16 33 H 0.10 -0.82 7.31 -2.39 -0.02 -0.84 16 34 H 0.13 -0.29 8.03 -2.91 -0.02 -0.31 16 35 H 0.13 -0.13 8.06 -2.91 -0.02 -0.15 16 36 H 0.13 -0.11 8.06 -2.91 -0.02 -0.14 16 37 H 0.13 -0.27 8.06 -2.91 -0.02 -0.30 16 38 H 0.14 -0.59 7.01 -2.91 -0.02 -0.61 16 39 H 0.10 -0.81 8.10 -2.39 -0.02 -0.83 16 40 H 0.09 -0.23 8.09 -2.39 -0.02 -0.25 16 41 H 0.10 -0.34 7.43 -2.39 -0.02 -0.35 16 42 H 0.10 -0.79 8.10 -2.39 -0.02 -0.81 16 43 H 0.20 -0.80 8.00 -2.91 -0.02 -0.82 16 Total: 0.00 -24.95 388.44 -2.96 -27.92 By element: Atomic # 1 Polarization: -16.63 SS G_CDS: -0.33 Total: -16.97 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 3.38 Total: 1.86 kcal Atomic # 7 Polarization: 3.15 SS G_CDS: -1.07 Total: 2.09 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -6.36 Total: -21.40 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 0.78 Total: -0.15 kcal Atomic # 14 Polarization: -3.23 SS G_CDS: 2.13 Total: -1.10 kcal Atomic # 16 Polarization: 9.24 SS G_CDS: -1.49 Total: 7.75 kcal Total: -24.95 -2.96 -27.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13458986_15065232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.497 kcal (2) G-P(sol) polarization free energy of solvation -24.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds