Wall clock time and date at job start Tue Mar 9 2021 13:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 C 1.52997 * 109.47314 * 239.99883 * 2 1 3 5 5 O 1.45201 * 109.47346 * 120.00147 * 2 1 3 6 6 C 1.34638 * 116.99819 * 59.99666 * 5 2 1 7 7 O 1.21513 * 120.00208 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99834 * 179.72501 * 6 5 2 9 9 C 1.46499 * 120.00199 * 180.27541 * 8 6 5 10 10 H 1.09004 * 112.84450 * 25.33375 * 9 8 6 11 11 C 1.53778 * 113.61783 * 156.52956 * 9 8 6 12 12 C 1.53780 * 87.08089 * 139.98334 * 11 9 8 13 13 H 1.09006 * 113.61383 * 220.02244 * 12 11 9 14 14 N 1.46500 * 113.61454 * 89.20358 * 12 11 9 15 15 S 1.65596 * 120.00036 * 144.99926 * 14 12 11 16 16 O 1.42103 * 106.40102 * 178.54078 * 15 14 12 17 17 O 1.42097 * 106.40182 * 311.45865 * 15 14 12 18 18 C 1.76195 * 107.21966 * 65.00058 * 15 14 12 19 19 C 1.33384 * 122.54065 * 269.70964 * 18 15 14 20 20 S 1.75881 * 109.59425 * 179.90383 * 19 18 15 21 21 C 1.75876 * 90.96933 * 0.30403 * 20 19 18 22 22 C 1.50707 * 125.20134 * 179.87023 * 21 20 19 23 23 O 1.42899 * 109.47492 * 119.95670 * 22 21 20 24 24 Si 1.86301 * 109.47094 * 359.95162 * 22 21 20 25 25 C 1.33384 * 109.59635 * 359.82521 * 21 20 19 26 26 C 1.53782 * 113.61551 * 254.14381 * 9 8 6 27 27 H 1.08997 * 109.47392 * 299.99655 * 1 2 3 28 28 H 1.08999 * 109.47056 * 59.99890 * 1 2 3 29 29 H 1.08999 * 109.47175 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47042 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47303 * 299.99959 * 3 2 1 32 32 H 1.09003 * 109.46990 * 60.00348 * 3 2 1 33 33 H 1.08999 * 109.47400 * 300.00352 * 4 2 1 34 34 H 1.09013 * 109.46945 * 59.99983 * 4 2 1 35 35 H 1.08997 * 109.47343 * 179.97438 * 4 2 1 36 36 H 0.97001 * 119.99727 * 0.28438 * 8 6 5 37 37 H 1.08993 * 113.61621 * 254.53317 * 11 9 8 38 38 H 1.09007 * 113.60903 * 25.43911 * 11 9 8 39 39 H 0.97000 * 119.99753 * 325.00577 * 14 12 11 40 40 H 1.08008 * 125.20079 * 0.02562 * 19 18 15 41 41 H 1.08999 * 109.46832 * 239.95549 * 22 21 20 42 42 H 0.96703 * 113.99255 * 299.99688 * 23 22 21 43 43 H 1.48503 * 109.99948 * 180.02562 * 24 22 21 44 44 H 1.48501 * 109.99972 * 301.32025 * 24 22 21 45 45 H 1.07996 * 122.53931 * 180.02562 * 25 21 20 46 46 H 1.08993 * 113.61558 * 334.55955 * 26 9 8 47 47 H 1.08995 * 113.61588 * 105.46882 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5035 8 7 2.0722 -2.6672 2.4140 9 6 1.6835 -4.0703 2.5772 10 1 1.4564 -4.5594 1.6300 11 6 2.6412 -4.8748 3.4719 12 6 1.3939 -5.5530 4.0626 13 1 1.4493 -5.7062 5.1404 14 7 0.9818 -6.7574 3.3373 15 16 0.3329 -8.0388 4.1614 16 8 0.0096 -9.0206 3.1863 17 8 1.1992 -8.2898 5.2594 18 6 -1.1966 -7.4969 4.8479 19 6 -1.2850 -6.9525 6.0624 20 16 -2.9599 -6.5362 6.4016 21 6 -3.4618 -7.1512 4.8322 22 6 -4.8771 -7.1586 4.3142 23 8 -4.9484 -6.3896 3.1119 24 14 -6.0105 -6.4176 5.5936 25 6 -2.3983 -7.6090 4.1701 26 6 0.6111 -4.2908 3.6571 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1393 35 1 3.1300 -0.7209 -1.2494 36 1 2.6318 -2.2383 3.0802 37 1 3.2876 -5.5557 2.9182 38 1 3.1863 -4.2619 4.1899 39 1 1.0891 -6.8041 2.3744 40 1 -0.4548 -6.7903 6.7340 41 1 -5.1831 -8.1843 4.1081 42 1 -4.6893 -5.4643 3.2210 43 1 -7.4094 -6.4197 5.0951 44 1 -5.9217 -7.1895 6.8591 45 1 -2.4693 -8.0347 3.1801 46 1 0.6002 -3.5182 4.4258 47 1 -0.3790 -4.5010 3.2527 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_13941014_15065232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:43:13 Heat of formation + Delta-G solvation = -118.467857 kcal Electronic energy + Delta-G solvation = -32771.358510 eV Core-core repulsion = 28176.021936 eV Total energy + Delta-G solvation = -4595.336574 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.105 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.85244 -40.63441 -39.53510 -38.27517 -37.95017 -37.58914 -36.89228 -35.55779 -34.77212 -32.82196 -31.87760 -28.34210 -28.30146 -27.28258 -27.00410 -26.00827 -24.95346 -23.23469 -21.59537 -21.38057 -20.83096 -20.29826 -19.21970 -19.13687 -18.69913 -17.92376 -17.70531 -17.65442 -17.17161 -17.08327 -16.70489 -16.37735 -16.03245 -15.67250 -15.51019 -15.36681 -15.07825 -14.86688 -14.54498 -14.39562 -14.31181 -14.18466 -13.97357 -13.81697 -13.78229 -13.42625 -13.20085 -13.17054 -13.08004 -12.91880 -12.86621 -12.84035 -12.73424 -12.56316 -12.52847 -12.25874 -12.24393 -12.16239 -11.84881 -11.65815 -11.31095 -10.98283 -10.76949 -10.72760 -10.22528 -10.19521 -9.91000 -5.29132 -0.80965 -0.52411 0.25626 0.52599 0.97692 1.08895 1.18037 1.46012 1.78862 1.85037 1.93017 2.67814 3.07195 3.14392 3.18248 3.25338 3.34586 3.55065 3.58619 3.72229 3.76285 3.78054 3.82003 3.89744 3.95866 4.17713 4.31984 4.32880 4.43477 4.49888 4.55098 4.60131 4.61707 4.67826 4.72564 4.76878 4.80801 4.85927 4.86637 4.91826 4.99636 5.03214 5.07901 5.27778 5.35099 5.44910 5.58445 5.75321 6.36554 6.38602 7.40332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.650 3.350 7 O -0.565 6.565 8 N -0.702 5.702 9 C 0.140 3.860 10 H 0.120 0.880 11 C -0.149 4.149 12 C 0.128 3.872 13 H 0.115 0.885 14 N -1.097 6.097 15 S 2.712 3.288 16 O -0.949 6.949 17 O -0.951 6.951 18 C -0.685 4.685 19 C -0.086 4.086 20 S 0.159 5.841 21 C -0.229 4.229 22 C -0.027 4.027 23 O -0.532 6.532 24 Si 0.655 3.345 25 C -0.041 4.041 26 C -0.169 4.169 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.407 0.593 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.422 0.578 40 H 0.185 0.815 41 H 0.126 0.874 42 H 0.381 0.619 43 H -0.231 1.231 44 H -0.237 1.237 45 H 0.157 0.843 46 H 0.100 0.900 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.079 7.142 2.933 7.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.101 3.899 3 C -0.199 4.199 4 C -0.242 4.242 5 O -0.280 6.280 6 C 0.403 3.597 7 O -0.454 6.454 8 N -0.361 5.361 9 C 0.036 3.964 10 H 0.138 0.862 11 C -0.189 4.189 12 C 0.019 3.981 13 H 0.132 0.868 14 N -0.855 5.855 15 S 2.798 3.202 16 O -0.939 6.939 17 O -0.941 6.941 18 C -0.785 4.785 19 C -0.225 4.225 20 S 0.423 5.577 21 C -0.346 4.346 22 C -0.141 4.141 23 O -0.337 6.337 24 Si 0.554 3.446 25 C -0.070 4.070 26 C -0.210 4.210 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.243 0.757 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.258 0.742 40 H 0.203 0.797 41 H 0.144 0.856 42 H 0.228 0.772 43 H -0.154 1.154 44 H -0.161 1.161 45 H 0.175 0.825 46 H 0.118 0.882 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.640 6.095 4.248 7.457 hybrid contribution 0.723 -0.362 -1.391 1.608 sum 0.082 5.734 2.857 6.407 Atomic orbital electron populations 1.22520 0.93832 1.05056 1.02706 1.22112 0.94441 0.91544 0.81849 1.21881 1.02342 0.92377 1.03337 1.22527 1.01611 1.03457 0.96565 1.86309 1.71444 1.23522 1.46741 1.18184 0.78715 0.80651 0.82104 1.90921 1.40926 1.70407 1.43163 1.44742 1.55509 1.11872 1.23934 1.22615 0.95458 0.79074 0.99279 0.86209 1.23765 0.96882 0.98889 0.99382 1.21491 0.95916 0.84034 0.96654 0.86752 1.55389 1.78014 1.31853 1.20280 1.01568 0.72991 0.72223 0.73379 1.93629 1.84608 1.55395 1.60247 1.93617 1.63208 1.82927 1.54312 1.30015 1.21846 1.20598 1.05999 1.25903 1.01741 0.97131 0.97735 1.84381 1.00234 1.57173 1.15957 1.25063 1.00837 1.09955 0.98774 1.24462 0.94463 1.00403 0.94747 1.86555 1.90140 1.25883 1.31118 0.95146 0.82013 0.89532 0.77909 1.19596 0.88831 0.97581 1.00991 1.24107 0.99894 0.97551 0.99443 0.92127 0.90948 0.89400 0.91398 0.89940 0.91393 0.89416 0.90934 0.92123 0.75743 0.89181 0.87700 0.74195 0.79739 0.85647 0.77174 1.15392 1.16132 0.82537 0.88172 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.12 8.37 37.16 0.31 0.19 16 2 C 0.14 0.09 1.13 -90.62 -0.10 -0.01 16 3 C -0.14 0.18 8.85 37.16 0.33 0.50 16 4 C -0.18 -0.15 8.37 37.16 0.31 0.16 16 5 O -0.37 -0.55 9.94 -40.32 -0.40 -0.95 16 6 C 0.65 1.05 8.06 54.06 0.44 1.48 16 7 O -0.57 -2.25 11.50 -19.28 -0.22 -2.47 16 8 N -0.70 1.21 5.37 -57.93 -0.31 0.90 16 9 C 0.14 -0.38 4.04 -67.12 -0.27 -0.65 16 10 H 0.12 -0.16 7.47 -51.93 -0.39 -0.55 16 11 C -0.15 0.65 7.62 -25.92 -0.20 0.46 16 12 C 0.13 -0.50 4.51 -67.02 -0.30 -0.81 16 13 H 0.11 -0.57 7.77 -51.93 -0.40 -0.97 16 14 N -1.10 2.96 5.73 -4.12 -0.02 2.94 16 15 S 2.71 0.92 5.77 -107.50 -0.62 0.30 16 16 O -0.95 -3.66 17.63 -57.17 -1.01 -4.67 16 17 O -0.95 -2.63 17.16 -57.17 -0.98 -3.61 16 18 C -0.68 0.25 5.86 -41.21 -0.24 0.01 16 19 C -0.09 0.14 10.70 29.04 0.31 0.45 16 20 S 0.16 -0.28 20.58 -107.50 -2.21 -2.50 16 21 C -0.23 0.11 5.72 -36.00 -0.21 -0.10 16 22 C -0.03 0.02 2.96 36.01 0.11 0.13 16 23 O -0.53 0.22 12.86 -35.23 -0.45 -0.24 16 24 Si 0.65 -1.02 30.97 -169.99 -5.26 -6.29 16 25 C -0.04 -0.01 9.56 -41.21 -0.39 -0.41 16 26 C -0.17 0.65 7.69 -25.82 -0.20 0.46 16 27 H 0.06 0.02 8.14 -51.93 -0.42 -0.41 16 28 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.09 0.23 5.88 -51.93 -0.31 -0.07 16 30 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 31 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 32 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 33 H 0.09 0.25 5.88 -51.93 -0.31 -0.05 16 34 H 0.07 -0.03 8.14 -51.92 -0.42 -0.45 16 35 H 0.06 0.04 8.14 -51.93 -0.42 -0.39 16 36 H 0.41 -1.56 8.82 -40.82 -0.36 -1.92 16 37 H 0.09 -0.37 8.14 -51.93 -0.42 -0.79 16 38 H 0.10 -0.62 8.11 -51.92 -0.42 -1.04 16 39 H 0.42 -1.60 8.80 -34.47 -0.30 -1.90 16 40 H 0.19 -0.72 8.00 -52.48 -0.42 -1.14 16 41 H 0.13 -0.06 7.96 -51.93 -0.41 -0.47 16 42 H 0.38 -1.62 8.70 45.56 0.40 -1.23 16 43 H -0.23 -0.28 7.11 56.52 0.40 0.12 16 44 H -0.24 -0.12 7.11 56.52 0.40 0.29 16 45 H 0.16 0.09 7.96 -52.49 -0.42 -0.33 16 46 H 0.10 -0.49 8.14 -51.93 -0.42 -0.91 16 47 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 LS Contribution 411.93 15.07 6.21 6.21 Total: 0.00 -11.37 411.93 -12.16 -23.53 By element: Atomic # 1 Polarization: -8.25 SS G_CDS: -6.77 Total: -15.01 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -0.11 Total: 1.87 kcal Atomic # 7 Polarization: 4.17 SS G_CDS: -0.33 Total: 3.83 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -3.06 Total: -11.94 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: -5.26 Total: -6.29 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -2.83 Total: -2.20 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -11.37 -12.16 -23.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_13941014_15065232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.938 kcal (2) G-P(sol) polarization free energy of solvation -11.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds